Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:36:12 (15913): wrapper (7.7.26015): starting
01:36:12 (15913): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:36:12] Arguments: --nthreads 8
[2025-11-27 01:36:12] Threads: 8
[2025-11-27 01:36:12] Checking for CVMFS
[2025-11-27 01:36:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:36:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:36:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:36:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:36:14] 2.11.2.0 4554 286102 141732 153341 2 85 19677618 25165824 1288 130560 12 125519889 99.851 84010361 3059 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:36:14] CVMFS is ok
[2025-11-27 01:36:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:36:14] Checking for apptainer binary...
[2025-11-27 01:36:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:36:14] Running /usr/bin/apptainer --version
[2025-11-27 01:36:15] apptainer version 1.3.2-1.el7
[2025-11-27 01:36:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:36:19] cg-vwn316.simple-grid.lan
[2025-11-27 01:36:19] apptainer works
[2025-11-27 01:36:19] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:36:19] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:36:19] Starting ATLAS job with PandaID=6895374400
[2025-11-27 01:36:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:37:54]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:37:54] 2025-11-27 23:37:05,860 | INFO     | time since job start (82629s) is within the limit (172800.0s)
[2025-11-28 00:37:54] 2025-11-27 23:37:07,187 | INFO     | monitor loop #5558: job 0:6895374400 is in state 'finished'
[2025-11-28 00:37:54] 2025-11-27 23:37:07,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:37:54] 2025-11-27 23:37:07,867 | INFO     | time since job start (82631s) is within the limit (172800.0s)
[2025-11-28 00:37:54] 2025-11-27 23:37:09,155 | INFO     | PID=19680 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:37:54] 2025-11-27 23:37:09,156 | INFO     | .. there are 9 such processes running
[2025-11-28 00:37:54] 2025-11-27 23:37:09,692 | INFO     | monitor loop #5559: job 0:6895374400 is in state 'finished'
[2025-11-28 00:37:54] 2025-11-27 23:37:09,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:37:54] 2025-11-27 23:37:10,156 | INFO     | time since job start (82634s) is within the limit (172800.0s)
[2025-11-28 00:37:54] 2025-11-27 23:37:12,163 | INFO     | time since job start (82636s) is within the limit (172800.0s)
[2025-11-28 00:37:54] 2025-11-27 23:37:12,200 | INFO     | monitor loop #5560: job 0:6895374400 is in state 'finished'
[2025-11-28 00:37:54] 2025-11-27 23:37:12,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:37:54] 2025-11-27 23:37:14,170 | INFO     | time since job start (82638s) is within the limit (172800.0s)
[2025-11-28 00:37:54] 2025-11-27 23:37:14,715 | INFO     | monitor loop #5561: job 0:6895374400 is in state 'finished'
[2025-11-28 00:37:54] 2025-11-27 23:37:14,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,434 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:37:54] 2025-11-27 23:37:15,437 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:37:54] 2025-11-27 23:37:15,439 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6895374400/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,440 | INFO     | extracted standard info from prmon json
[2025-11-28 00:37:54] 2025-11-27 23:37:15,440 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:37:54] 2025-11-27 23:37:15,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:37:54] 2025-11-27 23:37:15,481 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:37:54] 2025-11-27 23:37:15,483 | INFO     | sum of square deviations: 754474696253.4297
[2025-11-28 00:37:54] 2025-11-27 23:37:15,572 | INFO     | sum of deviations: 2697908786210.1177
[2025-11-28 00:37:54] 2025-11-27 23:37:15,573 | INFO     | mean x: 1764245524.0698886
[2025-11-28 00:37:54] 2025-11-27 23:37:15,573 | INFO     | mean y: 2849489.7115241634
[2025-11-28 00:37:54] 2025-11-27 23:37:15,573 | INFO     | intersect: -6305875672.386169
[2025-11-28 00:37:54] 2025-11-27 23:37:15,575 | INFO     | chi2: 17.311750447890063
[2025-11-28 00:37:54] 2025-11-27 23:37:15,577 | INFO     | sum of square deviations: 746092150057.6858
[2025-11-28 00:37:54] 2025-11-27 23:37:15,647 | INFO     | sum of deviations: 3155026306808.811
[2025-11-28 00:37:54] 2025-11-27 23:37:15,647 | INFO     | mean x: 1764245371.5738807
[2025-11-28 00:37:54] 2025-11-27 23:37:15,647 | INFO     | mean y: 2857805.491791045
[2025-11-28 00:37:54] 2025-11-27 23:37:15,647 | INFO     | intersect: -7457669099.329433
[2025-11-28 00:37:54] 2025-11-27 23:37:15,649 | INFO     | chi2: 13.959408894967064
[2025-11-28 00:37:54] 2025-11-27 23:37:15,649 | INFO     | current chi2=13.959408894967064 (change=19.364544117094635 %)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,649 | INFO     | right removable region: 1339
[2025-11-28 00:37:54] 2025-11-27 23:37:15,651 | INFO     | sum of square deviations: 746091272267.6858
[2025-11-28 00:37:54] 2025-11-27 23:37:15,706 | INFO     | sum of deviations: 2159457757280.494
[2025-11-28 00:37:54] 2025-11-27 23:37:15,707 | INFO     | mean x: 1764245676.5738807
[2025-11-28 00:37:54] 2025-11-27 23:37:15,707 | INFO     | mean y: 2859283.3283582088
[2025-11-28 00:37:54] 2025-11-27 23:37:15,707 | INFO     | intersect: -5103505250.928166
[2025-11-28 00:37:54] 2025-11-27 23:37:15,709 | INFO     | chi2: 13.106984029206107
[2025-11-28 00:37:54] 2025-11-27 23:37:15,709 | INFO     | current chi2=13.106984029206107 (change=24.288511039601016 %)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,709 | INFO     | left removable region: 10
[2025-11-28 00:37:54] 2025-11-27 23:37:15,711 | INFO     | sum of square deviations: 727867855558.8949
[2025-11-28 00:37:54] 2025-11-27 23:37:15,773 | INFO     | sum of deviations: 2332992003259.4497
[2025-11-28 00:37:54] 2025-11-27 23:37:15,774 | INFO     | mean x: 1764245646.082769
[2025-11-28 00:37:54] 2025-11-27 23:37:15,774 | INFO     | mean y: 2877014.0413844995
[2025-11-28 00:37:54] 2025-11-27 23:37:15,774 | INFO     | intersect: -5651955731.575529
[2025-11-28 00:37:54] 2025-11-27 23:37:15,776 | INFO     | chi2: 6.568589471655047
[2025-11-28 00:37:54] 2025-11-27 23:37:15,776 | INFO     | current memory leak: 3.21 B/s (using 1329 data points, chi2=6.57)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,777 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | ..............................
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . Timing measurements:
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . get job = 0 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . initial setup = 12 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . payload setup = 152 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . stage-in = 0 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . payload execution = 82176 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . stage-out = 8 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | . log creation = 2 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,778 | INFO     | ..............................
[2025-11-28 00:37:54] 2025-11-27 23:37:15,903 | INFO     | 
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | job summary report
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | --------------------------------------------------
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | PanDA job id: 6895374400
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | task id: 47556137
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | errors: (none)
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | pilot state: finished 
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | transexitcode: 0
[2025-11-28 00:37:54] 2025-11-27 23:37:15,904 | INFO     | exeerrorcode: 0
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | exeerrordiag: 
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | exitcode: 0
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | exitmsg: OK
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | cpuconsumptiontime: 311544 s
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | nevents: 1000
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | neventsw: 0
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | pid: 26253
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | pgrp: 26253
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | corecount: 8
[2025-11-28 00:37:54] 2025-11-27 23:37:15,905 | INFO     | event service: False
[2025-11-28 00:37:54] 2025-11-27 23:37:15,906 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 12: 2284371, 23: 2284399, 34: 2284427, 45: 2284583, 55: 2284611, 66: 2284639, 77: 2284667, 88: 2284723, 99: 2285321, 10
[2025-11-28 00:37:54] 2025-11-27 23:37:15,906 | INFO     | --------------------------------------------------
[2025-11-28 00:37:54] 2025-11-27 23:37:15,906 | INFO     | 
[2025-11-28 00:37:54] 2025-11-27 23:37:15,906 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-28 00:37:54] 2025-11-27 23:37:16,184 | INFO     | time since job start (82640s) is within the limit (172800.0s)
[2025-11-28 00:37:54] 2025-11-27 23:37:16,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:37:54] 2025-11-27 23:37:16,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:37:54] 2025-11-27 23:37:16,287 | INFO     | job 6895374400 has completed (purged errors)
[2025-11-28 00:37:54] 2025-11-27 23:37:16,287 | INFO     | overall cleanup function is called
[2025-11-28 00:37:54] 2025-11-27 23:37:17,304 | INFO     | --- collectZombieJob: --- 10, [26253]
[2025-11-28 00:37:54] 2025-11-27 23:37:17,305 | INFO     | zombie collector waiting for pid 26253
[2025-11-28 00:37:54] 2025-11-27 23:37:17,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:37:54] 2025-11-27 23:37:17,305 | INFO     | collected zombie processes
[2025-11-28 00:37:54] 2025-11-27 23:37:17,305 | INFO     | will attempt to kill all subprocesses of pid=26253
[2025-11-28 00:37:54] 2025-11-27 23:37:17,435 | INFO     | process IDs to be killed: [26253] (in reverse order)
[2025-11-28 00:37:54] 2025-11-27 23:37:18,129 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:37:54] 2025-11-27 23:37:18,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:37:54] 2025-11-27 23:37:18,132 | INFO     | did not find any defunct processes belonging to 26253
[2025-11-28 00:37:54] 2025-11-27 23:37:18,135 | INFO     | did not find any defunct processes belonging to 26253
[2025-11-28 00:37:54] 2025-11-27 23:37:18,157 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:37:54] 2025-11-27 23:37:18,157 | INFO     | ready for new job
[2025-11-28 00:37:54] 2025-11-27 23:37:18,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:37:54] 2025-11-27 23:37:18,162 | INFO     | ***************************************
[2025-11-28 00:37:54] 2025-11-27 23:37:18,162 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:37:54] 2025-11-27 23:37:18,162 | INFO     | ***************************************
[2025-11-28 00:37:54] 2025-11-27 23:37:18,163 | INFO     | 
[2025-11-28 00:37:54] 2025-11-27 23:37:18,163 | INFO     | pilot is running in a VM
[2025-11-28 00:37:54] 2025-11-27 23:37:18,163 | INFO     | architecture information:
[2025-11-28 00:37:54] 2025-11-27 23:37:18,167 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:37:54] 2025-11-27 23:37:18,364 | INFO     | cat /etc/os-release:
[2025-11-28 00:37:54] NAME="CentOS Linux"
[2025-11-28 00:37:54] VERSION="7 (Core)"
[2025-11-28 00:37:54] ID="centos"
[2025-11-28 00:37:54] ID_LIKE="rhel fedora"
[2025-11-28 00:37:54] VERSION_ID="7"
[2025-11-28 00:37:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:37:54] ANSI_COLOR="0;31"
[2025-11-28 00:37:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:37:54] HOME_URL="https://www.centos.org/"
[2025-11-28 00:37:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:37:54] 
[2025-11-28 00:37:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:37:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:37:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:37:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:37:54] 
[2025-11-28 00:37:54] 2025-11-27 23:37:18,364 | INFO     | ***************************************
[2025-11-28 00:37:54] 2025-11-27 23:37:18,868 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-28 00:37:54] 2025-11-27 23:37:18,975 | INFO     | sufficient remaining disk space (495379808256 B)
[2025-11-28 00:37:54] 2025-11-27 23:37:18,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:37:54] 2025-11-27 23:37:18,976 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:37:54] 2025-11-27 23:37:18,976 | INFO     | update_server=False
[2025-11-28 00:37:54] 2025-11-27 23:37:18,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:37:54] 2025-11-27 23:37:18,976 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:37:54] 2025-11-27 23:37:18,977 | INFO     | aborting loop
[2025-11-28 00:37:54] 2025-11-27 23:37:18,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:37:54] 2025-11-27 23:37:19,688 | INFO     | all data control threads have been joined
[2025-11-28 00:37:54] 2025-11-27 23:37:19,738 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:37:54] 2025-11-27 23:37:19,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:37:54] 2025-11-27 23:37:19,983 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:19,985 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:19,986 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,120 | INFO     | all job control threads have been joined
[2025-11-28 00:37:54] 2025-11-27 23:37:20,133 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,176 | INFO     | all payload control threads have been joined
[2025-11-28 00:37:54] 2025-11-27 23:37:20,192 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,488 | INFO     | [job] validate thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,694 | INFO     | [data] control thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,716 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,918 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:37:54] 2025-11-27 23:37:20,984 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:20,985 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:21,058 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:21,130 | INFO     | [job] control thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:21,182 | INFO     | [payload] control thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:21,428 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:21,924 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:23,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:37:54] 2025-11-27 23:37:25,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155585103680)>', '<ExcThread(monitor, started 140155268601600)>']
[2025-11-28 00:37:54] 2025-11-27 23:37:30,146 | INFO     | all workflow threads have been joined
[2025-11-28 00:37:54] 2025-11-27 23:37:30,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:37:54] 2025-11-27 23:37:30,147 | INFO     | traces error code: 0
[2025-11-28 00:37:54] 2025-11-27 23:37:30,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:37:54] 2025-11-27 23:37:49,370 | INFO     | PID=19680 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:37:54] 2025-11-27 23:37:49,370 | INFO     | .. there are 9 such processes running
[2025-11-28 00:37:54] 2025-11-27 23:37:49,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:37:54] 2025-11-27 23:37:49,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:37:54] 2025-11-27 23:37:49,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:37:54] 2025-11-27 23:37:49,371 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:37:54] 2025-11-27 23:37:49,371 | INFO     | [monitor] control thread has ended
[2025-11-28 00:37:54] 2025-11-27 23:37:49,693 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:37:54] 2025-11-27 23:37:49,787 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:37:54] 2025-11-27 23:37:49,862 [wrapper] pilotpid: 19680
[2025-11-28 00:37:54] 2025-11-27 23:37:49,954 [wrapper] Pilot exit status: 0
[2025-11-28 00:37:54] 2025-11-27 23:37:50,406 [wrapper] pandaids: 6895374400
[2025-11-28 00:37:54] 2025-11-27 23:37:51,429 [wrapper] cleanup supervisor_pilot 26132 19681
[2025-11-28 00:37:54] 2025-11-27 23:37:51,506 [wrapper] Test setup, not cleaning
[2025-11-28 00:37:54] 2025-11-27 23:37:51,599 [wrapper] apfmon messages muted
[2025-11-28 00:37:54] 2025-11-27 23:37:51,648 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:37:54] 2025-11-27 23:37:51,704 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:37:54]  *** Error codes and diagnostics ***
[2025-11-28 00:37:54]     "exeErrorCode": 0,
[2025-11-28 00:37:54]     "exeErrorDiag": "",
[2025-11-28 00:37:54]     "pilotErrorCode": 0,
[2025-11-28 00:37:54]     "pilotErrorDiag": "",
[2025-11-28 00:37:54]  *** Listing of results directory ***
[2025-11-28 00:37:54] total 1313428
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc    576529 Nov 24 00:11 pilot3.tar.gz
[2025-11-28 00:37:54] -rwx------. 1 boinc boinc     36292 Nov 24 00:17 runpilot2-wrapper.sh
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc      5112 Nov 24 00:17 queuedata.json
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:37:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:36 run_atlas
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:36 job.xml
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc      6392 Nov 27 01:36 init_data.xml
[2025-11-28 00:37:54] -rw-r--r--. 2 boinc boinc 408293933 Nov 27 01:36 EVNT.47483658._000941.pool.root.1
[2025-11-28 00:37:54] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:36 start_atlas.sh
[2025-11-28 00:37:54] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:36 shared
[2025-11-28 00:37:54] -rw-r--r--. 2 boinc boinc    590102 Nov 27 01:36 input.tar.gz
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:36 boinc_lockfile
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc      2786 Nov 27 01:36 pandaJob.out
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc    991546 Nov 27 01:39 agis_schedconf.cvmfs.json
[2025-11-28 00:37:54] drwx------. 5 boinc boinc      4096 Nov 27 01:39 pilot3
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:16 boinc_task_state.xml
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc 905936456 Nov 28 00:34 HITS.47556137._009273.pool.root.1
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc      1029 Nov 28 00:35 memory_monitor_summary.json
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc   1516240 Nov 28 00:35 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc   2428664 Nov 28 00:35 log.47556137._009273.job.log.tgz.1
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc      7945 Nov 28 00:37 heartbeat.json
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:37 boinc_mmap_file
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:37 wrapper_checkpoint.txt
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc        95 Nov 28 00:37 pilot_heartbeat.json
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc       820 Nov 28 00:37 pilotlog.txt
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc  10983363 Nov 28 00:37 log.47556137._009273.job.log.1
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc       353 Nov 28 00:37 output.list
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:37 runtime_log
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc  13434880 Nov 28 00:37 result.tar.gz
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:37 runtime_log.err
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc       662 Nov 28 00:37 RqHMDm6VYh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDpIKDmAw3HSn.diag
[2025-11-28 00:37:54] -rw-r--r--. 1 boinc boinc     21506 Nov 28 00:37 stderr.txt
[2025-11-28 00:37:54] HITS file was successfully produced:
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc 905936456 Nov 28 00:34 shared/HITS.pool.root.1
[2025-11-28 00:37:54]  *** Contents of shared directory: ***
[2025-11-28 00:37:54] total 1297148
[2025-11-28 00:37:54] -rw-r--r--. 2 boinc boinc 408293933 Nov 27 01:36 ATLAS.root_0
[2025-11-28 00:37:54] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:36 start_atlas.sh
[2025-11-28 00:37:54] -rw-r--r--. 2 boinc boinc    590102 Nov 27 01:36 input.tar.gz
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc 905936456 Nov 28 00:34 HITS.pool.root.1
[2025-11-28 00:37:54] -rw-------. 1 boinc boinc  13434880 Nov 28 00:37 result.tar.gz
00:37:56 (15913): run_atlas exited; CPU time 312115.659439
00:37:56 (15913): called boinc_finish(0)

</stderr_txt>
]]>

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