Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:20 (3110): wrapper (7.7.26015): starting
00:28:20 (3110): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:28:20] Arguments: --nthreads 8
[2025-11-27 00:28:20] Threads: 8
[2025-11-27 00:28:20] Checking for CVMFS
[2025-11-27 00:28:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:28:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:28:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:28:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:28:23] 2.11.2.0 19872 285877 141564 153340 2 84 24371933 25165824 1288 130560 25 121684185 99.874 77920206 2593 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:28:23] CVMFS is ok
[2025-11-27 00:28:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:28:23] Checking for apptainer binary...
[2025-11-27 00:28:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:28:23] Running /usr/bin/apptainer --version
[2025-11-27 00:28:23] apptainer version 1.3.2-1.el7
[2025-11-27 00:28:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:28:40] cg-vwn350.simple-grid.lan
[2025-11-27 00:28:40] apptainer works
[2025-11-27 00:28:40] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:28:40] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:28:40] Starting ATLAS job with PandaID=6895361924
[2025-11-27 00:28:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:44:49]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:44:49] 2025-11-27 22:44:03,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:44:49] 2025-11-27 22:44:04,374 | INFO     | time since job start (83461s) is within the limit (172800.0s)
[2025-11-27 23:44:49] 2025-11-27 22:44:05,974 | INFO     | monitor loop #5620: job 0:6895361924 is in state 'finished'
[2025-11-27 23:44:49] 2025-11-27 22:44:05,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:44:49] 2025-11-27 22:44:06,380 | INFO     | time since job start (83463s) is within the limit (172800.0s)
[2025-11-27 23:44:49] 2025-11-27 22:44:07,607 | INFO     | PID=6893 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:44:49] 2025-11-27 22:44:07,608 | INFO     | .. there are 9 such processes running
[2025-11-27 23:44:49] 2025-11-27 22:44:08,481 | INFO     | monitor loop #5621: job 0:6895361924 is in state 'finished'
[2025-11-27 23:44:49] 2025-11-27 22:44:08,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:44:49] 2025-11-27 22:44:08,609 | INFO     | time since job start (83465s) is within the limit (172800.0s)
[2025-11-27 23:44:49] 2025-11-27 22:44:10,619 | INFO     | time since job start (83467s) is within the limit (172800.0s)
[2025-11-27 23:44:49] 2025-11-27 22:44:10,985 | INFO     | monitor loop #5622: job 0:6895361924 is in state 'finished'
[2025-11-27 23:44:49] 2025-11-27 22:44:10,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:44:49] 2025-11-27 22:44:11,880 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:44:49] 2025-11-27 22:44:11,882 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:44:49] 2025-11-27 22:44:11,884 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6895361924/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:44:49] 2025-11-27 22:44:11,885 | INFO     | extracted standard info from prmon json
[2025-11-27 23:44:49] 2025-11-27 22:44:11,885 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:44:49] 2025-11-27 22:44:11,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:44:49] 2025-11-27 22:44:11,916 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:44:49] 2025-11-27 22:44:11,918 | INFO     | sum of square deviations: 778281320105.6963
[2025-11-27 23:44:49] 2025-11-27 22:44:11,966 | INFO     | sum of deviations: 2603124572308.9346
[2025-11-27 23:44:49] 2025-11-27 22:44:11,966 | INFO     | mean x: 1764241912.049301
[2025-11-27 23:44:49] 2025-11-27 22:44:11,966 | INFO     | mean y: 2835904.1949963206
[2025-11-27 23:44:49] 2025-11-27 22:44:11,967 | INFO     | intersect: -5898039979.7708845
[2025-11-27 23:44:49] 2025-11-27 22:44:11,968 | INFO     | chi2: 24.127315358260212
[2025-11-27 23:44:49] 2025-11-27 22:44:11,970 | INFO     | sum of square deviations: 769723017812.6714
[2025-11-27 23:44:49] 2025-11-27 22:44:12,043 | INFO     | sum of deviations: 3048070795639.697
[2025-11-27 23:44:49] 2025-11-27 22:44:12,043 | INFO     | mean x: 1764241759.5531757
[2025-11-27 23:44:49] 2025-11-27 22:44:12,043 | INFO     | mean y: 2843831.35155096
[2025-11-27 23:44:49] 2025-11-27 22:44:12,044 | INFO     | intersect: -6983479377.513128
[2025-11-27 23:44:49] 2025-11-27 22:44:12,045 | INFO     | chi2: 20.917335451352905
[2025-11-27 23:44:49] 2025-11-27 22:44:12,045 | INFO     | current chi2=20.917335451352905 (change=13.304339331762167 %)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,046 | INFO     | right removable region: 1353
[2025-11-27 23:44:49] 2025-11-27 22:44:12,047 | INFO     | sum of square deviations: 769722147952.6707
[2025-11-27 23:44:49] 2025-11-27 22:44:12,125 | INFO     | sum of deviations: 2036738742357.1492
[2025-11-27 23:44:49] 2025-11-27 22:44:12,126 | INFO     | mean x: 1764242064.5531757
[2025-11-27 23:44:49] 2025-11-27 22:44:12,126 | INFO     | mean y: 2845995.1506646974
[2025-11-27 23:44:49] 2025-11-27 22:44:12,126 | INFO     | intersect: -4665462138.283173
[2025-11-27 23:44:49] 2025-11-27 22:44:12,127 | INFO     | chi2: 19.504557008613542
[2025-11-27 23:44:49] 2025-11-27 22:44:12,128 | INFO     | current chi2=19.504557008613542 (change=19.15985380472107 %)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,128 | INFO     | left removable region: 10
[2025-11-27 23:44:49] 2025-11-27 22:44:12,134 | INFO     | sum of square deviations: 751114367895.8694
[2025-11-27 23:44:49] 2025-11-27 22:44:12,230 | INFO     | sum of deviations: 2109532677807.465
[2025-11-27 23:44:49] 2025-11-27 22:44:12,230 | INFO     | mean x: 1764242034.061802
[2025-11-27 23:44:49] 2025-11-27 22:44:12,230 | INFO     | mean y: 2864220.500372301
[2025-11-27 23:44:49] 2025-11-27 22:44:12,230 | INFO     | intersect: -4952075242.102004
[2025-11-27 23:44:49] 2025-11-27 22:44:12,232 | INFO     | chi2: 12.428633413191445
[2025-11-27 23:44:49] 2025-11-27 22:44:12,232 | INFO     | current memory leak: 2.81 B/s (using 1343 data points, chi2=12.43)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,233 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | ..............................
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . Timing measurements:
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . get job = 0 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . initial setup = 4 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . payload setup = 151 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . stage-in = 0 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . payload execution = 83024 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . stage-out = 8 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | . log creation = 2 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,234 | INFO     | ..............................
[2025-11-27 23:44:49] 2025-11-27 22:44:12,344 | INFO     | 
[2025-11-27 23:44:49] 2025-11-27 22:44:12,345 | INFO     | job summary report
[2025-11-27 23:44:49] 2025-11-27 22:44:12,345 | INFO     | --------------------------------------------------
[2025-11-27 23:44:49] 2025-11-27 22:44:12,345 | INFO     | PanDA job id: 6895361924
[2025-11-27 23:44:49] 2025-11-27 22:44:12,345 | INFO     | task id: 47556137
[2025-11-27 23:44:49] 2025-11-27 22:44:12,345 | INFO     | errors: (none)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,345 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | pilot state: finished 
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | transexitcode: 0
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | exeerrorcode: 0
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | exeerrordiag: 
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | exitcode: 0
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | exitmsg: OK
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | cpuconsumptiontime: 313250 s
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | nevents: 1000
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | neventsw: 0
[2025-11-27 23:44:49] 2025-11-27 22:44:12,346 | INFO     | pid: 13455
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | pgrp: 13455
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | corecount: 8
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | event service: False
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | sizes: {0: 2283487, 1: 2284173, 2: 2284372, 13: 2284372, 24: 2284428, 34: 2284456, 45: 2284612, 56: 2284640, 67: 2284668, 77: 2284696, 88: 2284752, 92: 2285322, 99
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | --------------------------------------------------
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | 
[2025-11-27 23:44:49] 2025-11-27 22:44:12,347 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-11-27 23:44:49] 2025-11-27 22:44:12,627 | INFO     | time since job start (83469s) is within the limit (172800.0s)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,654 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,654 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,654 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:44:49] 2025-11-27 22:44:12,657 | INFO     | job 6895361924 has completed (purged errors)
[2025-11-27 23:44:49] 2025-11-27 22:44:12,657 | INFO     | overall cleanup function is called
[2025-11-27 23:44:49] 2025-11-27 22:44:13,681 | INFO     | --- collectZombieJob: --- 10, [13455]
[2025-11-27 23:44:49] 2025-11-27 22:44:13,682 | INFO     | zombie collector waiting for pid 13455
[2025-11-27 23:44:49] 2025-11-27 22:44:13,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:44:49] 2025-11-27 22:44:13,682 | INFO     | collected zombie processes
[2025-11-27 23:44:49] 2025-11-27 22:44:13,682 | INFO     | will attempt to kill all subprocesses of pid=13455
[2025-11-27 23:44:49] 2025-11-27 22:44:13,818 | INFO     | process IDs to be killed: [13455] (in reverse order)
[2025-11-27 23:44:49] 2025-11-27 22:44:14,825 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:44:49] 2025-11-27 22:44:14,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:44:49] 2025-11-27 22:44:14,829 | INFO     | did not find any defunct processes belonging to 13455
[2025-11-27 23:44:49] 2025-11-27 22:44:14,832 | INFO     | did not find any defunct processes belonging to 13455
[2025-11-27 23:44:49] 2025-11-27 22:44:14,891 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:44:49] 2025-11-27 22:44:14,891 | INFO     | ready for new job
[2025-11-27 23:44:49] 2025-11-27 22:44:14,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:44:49] 2025-11-27 22:44:14,897 | INFO     | ***************************************
[2025-11-27 23:44:49] 2025-11-27 22:44:14,897 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:44:49] 2025-11-27 22:44:14,897 | INFO     | ***************************************
[2025-11-27 23:44:49] 2025-11-27 22:44:14,897 | INFO     | 
[2025-11-27 23:44:49] 2025-11-27 22:44:14,898 | INFO     | pilot is running in a VM
[2025-11-27 23:44:49] 2025-11-27 22:44:14,898 | INFO     | architecture information:
[2025-11-27 23:44:49] 2025-11-27 22:44:14,911 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:44:49] 2025-11-27 22:44:15,197 | INFO     | cat /etc/os-release:
[2025-11-27 23:44:49] NAME="CentOS Linux"
[2025-11-27 23:44:49] VERSION="7 (Core)"
[2025-11-27 23:44:49] ID="centos"
[2025-11-27 23:44:49] ID_LIKE="rhel fedora"
[2025-11-27 23:44:49] VERSION_ID="7"
[2025-11-27 23:44:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:44:49] ANSI_COLOR="0;31"
[2025-11-27 23:44:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:44:49] HOME_URL="https://www.centos.org/"
[2025-11-27 23:44:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:44:49] 
[2025-11-27 23:44:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:44:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:44:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:44:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:44:49] 
[2025-11-27 23:44:49] 2025-11-27 22:44:15,197 | INFO     | ***************************************
[2025-11-27 23:44:49] 2025-11-27 22:44:15,701 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-11-27 23:44:49] 2025-11-27 22:44:15,962 | INFO     | sufficient remaining disk space (495220424704 B)
[2025-11-27 23:44:49] 2025-11-27 22:44:15,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:44:49] 2025-11-27 22:44:15,963 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:44:49] 2025-11-27 22:44:15,963 | INFO     | update_server=False
[2025-11-27 23:44:49] 2025-11-27 22:44:15,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:44:49] 2025-11-27 22:44:15,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:44:49] 2025-11-27 22:44:16,016 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 23:44:49] 2025-11-27 22:44:16,017 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 23:44:49] 2025-11-27 22:44:16,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:44:49] 2025-11-27 22:44:16,017 | INFO     | will abort loop
[2025-11-27 23:44:49] 2025-11-27 22:44:16,797 | INFO     | all data control threads have been joined
[2025-11-27 23:44:49] 2025-11-27 22:44:16,806 | INFO     | all payload control threads have been joined
[2025-11-27 23:44:49] 2025-11-27 22:44:16,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:44:49] 2025-11-27 22:44:16,969 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,023 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,218 | INFO     | all job control threads have been joined
[2025-11-27 23:44:49] 2025-11-27 22:44:17,262 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,279 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:44:49] 2025-11-27 22:44:17,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,803 | INFO     | [data] control thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,812 | INFO     | [payload] control thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:17,861 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,211 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,225 | INFO     | [job] control thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,290 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,364 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,388 | INFO     | [job] validate thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,452 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:18,852 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:19,972 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:44:49] 2025-11-27 22:44:28,996 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:44:49] 2025-11-27 22:44:30,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908684552000)>', '<ExcThread(monitor, started 139908089902848)>']
[2025-11-27 23:44:49] 2025-11-27 22:44:35,671 | INFO     | all workflow threads have been joined
[2025-11-27 23:44:49] 2025-11-27 22:44:35,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:44:49] 2025-11-27 22:44:35,672 | INFO     | traces error code: 0
[2025-11-27 23:44:49] 2025-11-27 22:44:35,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:44:49] 2025-11-27 22:44:45,771 | INFO     | PID=6893 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:44:49] 2025-11-27 22:44:45,771 | INFO     | .. there are 9 such processes running
[2025-11-27 23:44:49] 2025-11-27 22:44:45,772 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:44:49] 2025-11-27 22:44:45,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:44:49] 2025-11-27 22:44:45,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:44:49] 2025-11-27 22:44:45,773 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:44:49] 2025-11-27 22:44:45,773 | INFO     | [monitor] control thread has ended
[2025-11-27 23:44:49] 2025-11-27 22:44:46,153 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:44:49] 2025-11-27 22:44:46,209 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:44:49] 2025-11-27 22:44:46,247 [wrapper] pilotpid: 6893
[2025-11-27 23:44:49] 2025-11-27 22:44:46,292 [wrapper] Pilot exit status: 0
[2025-11-27 23:44:49] 2025-11-27 22:44:46,625 [wrapper] pandaids: 6895361924
[2025-11-27 23:44:49] 2025-11-27 22:44:47,460 [wrapper] cleanup supervisor_pilot 16200 6894
[2025-11-27 23:44:49] 2025-11-27 22:44:47,496 [wrapper] Test setup, not cleaning
[2025-11-27 23:44:49] 2025-11-27 22:44:47,609 [wrapper] apfmon messages muted
[2025-11-27 23:44:49] 2025-11-27 22:44:47,710 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:44:49] 2025-11-27 22:44:47,804 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:44:49]  *** Error codes and diagnostics ***
[2025-11-27 23:44:49]     "exeErrorCode": 0,
[2025-11-27 23:44:49]     "exeErrorDiag": "",
[2025-11-27 23:44:49]     "pilotErrorCode": 0,
[2025-11-27 23:44:49]     "pilotErrorDiag": "",
[2025-11-27 23:44:49]  *** Listing of results directory ***
[2025-11-27 23:44:49] total 1326916
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc      5112 Nov 23 15:54 queuedata.json
[2025-11-27 23:44:49] -rwx------. 1 boinc boinc     36292 Nov 23 15:56 runpilot2-wrapper.sh
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc    576529 Nov 23 15:56 pilot3.tar.gz
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:44:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:28 run_atlas
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:28 job.xml
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc      6393 Nov 27 00:28 init_data.xml
[2025-11-27 23:44:49] -rw-r--r--. 2 boinc boinc 409269860 Nov 27 00:28 EVNT.47483658._000771.pool.root.1
[2025-11-27 23:44:49] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:28 start_atlas.sh
[2025-11-27 23:44:49] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:28 shared
[2025-11-27 23:44:49] -rw-r--r--. 2 boinc boinc    590095 Nov 27 00:28 input.tar.gz
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:28 boinc_lockfile
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc      2786 Nov 27 00:28 pandaJob.out
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc    991538 Nov 27 00:32 agis_schedconf.cvmfs.json
[2025-11-27 23:44:49] drwx------. 5 boinc boinc      4096 Nov 27 00:33 pilot3
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:15 boinc_task_state.xml
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc 918457135 Nov 27 23:41 HITS.47556137._007662.pool.root.1
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc      1027 Nov 27 23:42 memory_monitor_summary.json
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc   1516240 Nov 27 23:42 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc   2442047 Nov 27 23:42 log.47556137._007662.job.log.tgz.1
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc      7960 Nov 27 23:44 heartbeat.json
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc        95 Nov 27 23:44 pilot_heartbeat.json
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc       819 Nov 27 23:44 pilotlog.txt
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:44 wrapper_checkpoint.txt
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:44 boinc_mmap_file
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc  11122459 Nov 27 23:44 log.47556137._007662.job.log.1
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc       353 Nov 27 23:44 output.list
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:44 runtime_log
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc  13588480 Nov 27 23:44 result.tar.gz
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc      8833 Nov 27 23:44 runtime_log.err
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc       662 Nov 27 23:44 78mMDmagQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaaIKDms3Zp5m.diag
[2025-11-27 23:44:49] -rw-r--r--. 1 boinc boinc     21495 Nov 27 23:44 stderr.txt
[2025-11-27 23:44:49] HITS file was successfully produced:
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc 918457135 Nov 27 23:41 shared/HITS.pool.root.1
[2025-11-27 23:44:49]  *** Contents of shared directory: ***
[2025-11-27 23:44:49] total 1310480
[2025-11-27 23:44:49] -rw-r--r--. 2 boinc boinc 409269860 Nov 27 00:28 ATLAS.root_0
[2025-11-27 23:44:49] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:28 start_atlas.sh
[2025-11-27 23:44:49] -rw-r--r--. 2 boinc boinc    590095 Nov 27 00:28 input.tar.gz
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc 918457135 Nov 27 23:41 HITS.pool.root.1
[2025-11-27 23:44:49] -rw-------. 1 boinc boinc  13588480 Nov 27 23:44 result.tar.gz
23:44:51 (3110): run_atlas exited; CPU time 313800.207471
23:44:51 (3110): called boinc_finish(0)

</stderr_txt>
]]>

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