Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:03 (433828): wrapper (7.7.26015): starting
00:01:03 (433828): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:01:03] Arguments: --nthreads 12
[2025-11-25 00:01:03] Threads: 12
[2025-11-25 00:01:03] Checking for CVMFS
[2025-11-25 00:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:05] 2.13.3.0 5308 6548 224284 153270 0 347 31408189 32935937 22575 16776704 0 16211469 99.432 28712853 41305 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:01:05] CVMFS is ok
[2025-11-25 00:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:05] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:05] Checking for apptainer binary...
[2025-11-25 00:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:05] Running /usr/bin/apptainer --version
[2025-11-25 00:01:06] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:06] c6-1-24-1.aglt2.org
[2025-11-25 00:01:06] apptainer works
[2025-11-25 00:01:06] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:01:06] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:01:06] Starting ATLAS job with PandaID=6895375033
[2025-11-25 00:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:29:50]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:29:50] 2025-11-25 17:29:15,936 | INFO     | monitor loop #2706: job 0:6895375033 is in state 'finished'
[2025-11-25 12:29:50] 2025-11-25 17:29:15,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:29:50] 2025-11-25 17:29:16,888 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:29:50] 2025-11-25 17:29:16,891 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3004.078589285715
[2025-11-25 12:29:50] 2025-11-25 17:29:16,901 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895375033/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:29:50] 2025-11-25 17:29:16,902 | INFO     | extracted standard info from prmon json
[2025-11-25 12:29:50] 2025-11-25 17:29:16,902 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:29:50] 2025-11-25 17:29:16,902 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:29:50] 2025-11-25 17:29:16,914 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:29:50] 2025-11-25 17:29:16,915 | INFO     | sum of square deviations: 122086108397.53076
[2025-11-25 12:29:50] 2025-11-25 17:29:16,922 | INFO     | time since job start (44818s) is within the limit (172800.0s)
[2025-11-25 12:29:50] 2025-11-25 17:29:16,927 | INFO     | sum of deviations: 1897669362725.7656
[2025-11-25 12:29:50] 2025-11-25 17:29:16,928 | INFO     | mean x: 1764069416.4515688
[2025-11-25 12:29:50] 2025-11-25 17:29:16,929 | INFO     | mean y: 3483790.8103683493
[2025-11-25 12:29:50] 2025-11-25 17:29:16,930 | INFO     | intersect: -27416675056.59351
[2025-11-25 12:29:50] 2025-11-25 17:29:16,931 | INFO     | chi2: 8.24900463612637
[2025-11-25 12:29:50] 2025-11-25 17:29:16,932 | INFO     | sum of square deviations: 119605941672.93237
[2025-11-25 12:29:50] 2025-11-25 17:29:16,947 | INFO     | sum of deviations: 2220135012238.7007
[2025-11-25 12:29:50] 2025-11-25 17:29:16,947 | INFO     | mean x: 1764069264.0096154
[2025-11-25 12:29:50] 2025-11-25 17:29:16,947 | INFO     | mean y: 3503611.756868132
[2025-11-25 12:29:50] 2025-11-25 17:29:16,947 | INFO     | intersect: -32741290520.22418
[2025-11-25 12:29:50] 2025-11-25 17:29:16,959 | INFO     | chi2: 4.574808137045422
[2025-11-25 12:29:50] 2025-11-25 17:29:16,959 | INFO     | current chi2=4.574808137045422 (change=44.54108903018274 %)
[2025-11-25 12:29:50] 2025-11-25 17:29:16,960 | INFO     | sum of square deviations: 117158928809.19768
[2025-11-25 12:29:50] 2025-11-25 17:29:16,983 | INFO     | sum of deviations: 2319347329538.9673
[2025-11-25 12:29:50] 2025-11-25 17:29:16,983 | INFO     | mean x: 1764069111.5463347
[2025-11-25 12:29:50] 2025-11-25 17:29:16,983 | INFO     | mean y: 3509780.911479945
[2025-11-25 12:29:50] 2025-11-25 17:29:16,983 | INFO     | intersect: -34919043920.91072
[2025-11-25 12:29:50] 2025-11-25 17:29:16,984 | INFO     | chi2: 3.9475232369092055
[2025-11-25 12:29:50] 2025-11-25 17:29:16,984 | INFO     | current chi2=3.9475232369092055 (change=13.711720390121979 %)
[2025-11-25 12:29:50] 2025-11-25 17:29:16,984 | INFO     | right removable region: 722
[2025-11-25 12:29:50] 2025-11-25 17:29:16,985 | INFO     | sum of square deviations: 119601715402.602
[2025-11-25 12:29:50] 2025-11-25 17:29:16,994 | INFO     | sum of deviations: 1579708797809.862
[2025-11-25 12:29:50] 2025-11-25 17:29:16,995 | INFO     | mean x: 1764069569.0233517
[2025-11-25 12:29:50] 2025-11-25 17:29:16,995 | INFO     | mean y: 3503305.008241758
[2025-11-25 12:29:50] 2025-11-25 17:29:16,995 | INFO     | intersect: -23296465334.69083
[2025-11-25 12:29:50] 2025-11-25 17:29:16,996 | INFO     | chi2: 4.974113563543468
[2025-11-25 12:29:50] 2025-11-25 17:29:16,996 | INFO     | current chi2=4.974113563543468 (change=39.700439229244395 %)
[2025-11-25 12:29:50] 2025-11-25 17:29:16,997 | INFO     | sum of square deviations: 117152202383.75911
[2025-11-25 12:29:50] 2025-11-25 17:29:17,005 | INFO     | sum of deviations: 1466618771978.6838
[2025-11-25 12:29:50] 2025-11-25 17:29:17,006 | INFO     | mean x: 1764069721.5643153
[2025-11-25 12:29:50] 2025-11-25 17:29:17,006 | INFO     | mean y: 3510337.716459198
[2025-11-25 12:29:50] 2025-11-25 17:29:17,006 | INFO     | intersect: -22080733202.583412
[2025-11-25 12:29:50] 2025-11-25 17:29:17,007 | INFO     | chi2: 4.613177761484547
[2025-11-25 12:29:50] 2025-11-25 17:29:17,007 | INFO     | current chi2=4.613177761484547 (change=7.2562839076355345 %)
[2025-11-25 12:29:50] 2025-11-25 17:29:17,007 | INFO     | left removable region: 20
[2025-11-25 12:29:50] 2025-11-25 17:29:17,008 | INFO     | sum of square deviations: 107238065810.81065
[2025-11-25 12:29:50] 2025-11-25 17:29:17,016 | INFO     | sum of deviations: 1730258175523.4346
[2025-11-25 12:29:50] 2025-11-25 17:29:17,017 | INFO     | mean x: 1764069691.1609685
[2025-11-25 12:29:50] 2025-11-25 17:29:17,017 | INFO     | mean y: 3547617.066951567
[2025-11-25 12:29:50] 2025-11-25 17:29:17,017 | INFO     | intersect: -28459255980.204426
[2025-11-25 12:29:50] 2025-11-25 17:29:17,017 | INFO     | chi2: 0.09378762040171335
[2025-11-25 12:29:50] 2025-11-25 17:29:17,018 | INFO     | current memory leak: 16.13 B/s (using 702 data points, chi2=0.09)
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | could have reported an average CPU frequency of 2936 MHz (28 samples)
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | ..............................
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . Timing measurements:
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . get job = 1 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . initial setup = 3 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . payload setup = 42 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . stage-in = 0 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . payload execution = 44692 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . stage-out = 3 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | . log creation = 0 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,019 | INFO     | ..............................
[2025-11-25 12:29:50] 2025-11-25 17:29:17,100 | INFO     | 
[2025-11-25 12:29:50] 2025-11-25 17:29:17,100 | INFO     | job summary report
[2025-11-25 12:29:50] 2025-11-25 17:29:17,100 | INFO     | --------------------------------------------------
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | PanDA job id: 6895375033
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | task id: 47556137
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | errors: (none)
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | pilot state: finished 
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | transexitcode: 0
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | exeerrorcode: 0
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | exeerrordiag: 
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | exitcode: 0
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | exitmsg: OK
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | cpuconsumptiontime: 228696 s
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | nevents: 1000
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | neventsw: 0
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | pid: 447610
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | pgrp: 447610
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | corecount: 12
[2025-11-25 12:29:50] 2025-11-25 17:29:17,101 | INFO     | event service: False
[2025-11-25 12:29:50] 2025-11-25 17:29:17,102 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 3: 2284394, 14: 2284394, 24: 2284422, 33: 2284840, 35: 2284896, 44737: 2330451, 44741: 2339450, 44742: 2339506, 44750: 
[2025-11-25 12:29:50] 2025-11-25 17:29:17,102 | INFO     | --------------------------------------------------
[2025-11-25 12:29:50] 2025-11-25 17:29:17,102 | INFO     | 
[2025-11-25 12:29:50] 2025-11-25 17:29:17,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 12:29:50] 2025-11-25 17:29:17,137 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | job 6895375033 has completed (purged errors)
[2025-11-25 12:29:50] 2025-11-25 17:29:17,139 | INFO     | overall cleanup function is called
[2025-11-25 12:29:50] 2025-11-25 17:29:18,161 | INFO     | --- collectZombieJob: --- 10, [447610]
[2025-11-25 12:29:50] 2025-11-25 17:29:18,161 | INFO     | zombie collector waiting for pid 447610
[2025-11-25 12:29:50] 2025-11-25 17:29:18,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:29:50] 2025-11-25 17:29:18,161 | INFO     | collected zombie processes
[2025-11-25 12:29:50] 2025-11-25 17:29:18,161 | INFO     | will attempt to kill all subprocesses of pid=447610
[2025-11-25 12:29:50] 2025-11-25 17:29:18,527 | INFO     | process IDs to be killed: [447610] (in reverse order)
[2025-11-25 12:29:50] 2025-11-25 17:29:18,650 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:29:50] 2025-11-25 17:29:18,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:29:50] 2025-11-25 17:29:18,666 | INFO     | did not find any defunct processes belonging to 447610
[2025-11-25 12:29:50] 2025-11-25 17:29:18,681 | INFO     | did not find any defunct processes belonging to 447610
[2025-11-25 12:29:50] 2025-11-25 17:29:18,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:29:50] 2025-11-25 17:29:18,683 | INFO     | ready for new job
[2025-11-25 12:29:50] 2025-11-25 17:29:18,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:29:50] 2025-11-25 17:29:18,687 | INFO     | ***************************************
[2025-11-25 12:29:50] 2025-11-25 17:29:18,687 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:29:50] 2025-11-25 17:29:18,687 | INFO     | ***************************************
[2025-11-25 12:29:50] 2025-11-25 17:29:18,687 | INFO     | 
[2025-11-25 12:29:50] 2025-11-25 17:29:18,689 | INFO     | architecture information:
[2025-11-25 12:29:50] 2025-11-25 17:29:18,690 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:29:50] 2025-11-25 17:29:18,708 | INFO     | cat /etc/os-release:
[2025-11-25 12:29:50] NAME="CentOS Linux"
[2025-11-25 12:29:50] VERSION="7 (Core)"
[2025-11-25 12:29:50] ID="centos"
[2025-11-25 12:29:50] ID_LIKE="rhel fedora"
[2025-11-25 12:29:50] VERSION_ID="7"
[2025-11-25 12:29:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:29:50] ANSI_COLOR="0;31"
[2025-11-25 12:29:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:29:50] HOME_URL="https://www.centos.org/"
[2025-11-25 12:29:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:29:50] 
[2025-11-25 12:29:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:29:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:29:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:29:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:29:50] 
[2025-11-25 12:29:50] 2025-11-25 17:29:18,708 | INFO     | ***************************************
[2025-11-25 12:29:50] 2025-11-25 17:29:19,211 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 12:29:50] 2025-11-25 17:29:19,230 | INFO     | sufficient remaining disk space (70987546624 B)
[2025-11-25 12:29:50] 2025-11-25 17:29:19,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:29:50] 2025-11-25 17:29:19,231 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:29:50] 2025-11-25 17:29:19,231 | INFO     | update_server=False
[2025-11-25 12:29:50] 2025-11-25 17:29:19,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:29:50] 2025-11-25 17:29:19,231 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:29:50] 2025-11-25 17:29:19,503 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:29:50] 2025-11-25 17:29:19,503 | INFO     | aborting loop
[2025-11-25 12:29:50] 2025-11-25 17:29:19,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:29:50] 2025-11-25 17:29:20,246 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:20,276 | INFO     | all data control threads have been joined
[2025-11-25 12:29:50] 2025-11-25 17:29:20,509 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:20,521 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:20,726 | INFO     | all payload control threads have been joined
[2025-11-25 12:29:50] 2025-11-25 17:29:20,804 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:20,840 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:20,935 | INFO     | all job control threads have been joined
[2025-11-25 12:29:50] 2025-11-25 17:29:21,016 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,252 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,252 | INFO     | [job] validate thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,282 | INFO     | [data] control thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,505 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,649 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,732 | INFO     | [payload] control thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:21,953 | INFO     | [job] control thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:22,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:29:50] 2025-11-25 17:29:23,125 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:23,855 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:29:50] 2025-11-25 17:29:39,177 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:29:50] 2025-11-25 17:29:40,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139636876506944)>', '<ExcThread(monitor, started 139635996997376)>']
[2025-11-25 12:29:50] 2025-11-25 17:29:45,887 | INFO     | all workflow threads have been joined
[2025-11-25 12:29:50] 2025-11-25 17:29:45,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:29:50] 2025-11-25 17:29:45,888 | INFO     | traces error code: 0
[2025-11-25 12:29:50] 2025-11-25 17:29:45,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:29:50] 2025-11-25 17:29:50,375 | INFO     | PID=438593 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 12:29:50] 2025-11-25 17:29:50,375 | INFO     | .. there are 32 such processes running
[2025-11-25 12:29:50] 2025-11-25 17:29:50,375 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:29:50] 2025-11-25 17:29:50,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:29:50] 2025-11-25 17:29:50,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:29:50] 2025-11-25 17:29:50,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:29:50] 2025-11-25 17:29:50,376 | INFO     | [monitor] control thread has ended
[2025-11-25 12:29:50] 2025-11-25 17:29:50,541 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:29:50] 2025-11-25 17:29:50,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:29:50] 2025-11-25 17:29:50,547 [wrapper] pilotpid: 438593
[2025-11-25 12:29:50] 2025-11-25 17:29:50,549 [wrapper] Pilot exit status: 0
[2025-11-25 12:29:50] 2025-11-25 17:29:50,563 [wrapper] pandaids: 6895375033
[2025-11-25 12:29:50] 2025-11-25 17:29:50,644 [wrapper] cleanup supervisor_pilot 2770728 438594
[2025-11-25 12:29:50] 2025-11-25 17:29:50,649 [wrapper] Test setup, not cleaning
[2025-11-25 12:29:50] 2025-11-25 17:29:50,652 [wrapper] apfmon messages muted
[2025-11-25 12:29:50] 2025-11-25 17:29:50,658 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:29:50] 2025-11-25 17:29:50,661 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:29:50]  *** Error codes and diagnostics ***
[2025-11-25 12:29:50]     "exeErrorCode": 0,
[2025-11-25 12:29:50]     "exeErrorDiag": "",
[2025-11-25 12:29:50]     "pilotErrorCode": 0,
[2025-11-25 12:29:50]     "pilotErrorDiag": "",
[2025-11-25 12:29:50]  *** Listing of results directory ***
[2025-11-25 12:29:50] total 1300388
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 18:11 pilot3.tar.gz
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 18:43 queuedata.json
[2025-11-25 12:29:50] -rwx------. 1 boincer umatlas     36292 Nov 23 18:44 runpilot2-wrapper.sh
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:29:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-25 12:29:50] -rw-r--r--. 2 boincer umatlas 407453356 Nov 25 00:01 EVNT.47483658._000950.pool.root.1
[2025-11-25 12:29:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 12:29:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-25 12:29:50] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:01 input.tar.gz
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:01 pandaJob.out
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-25 12:29:50] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas       533 Nov 25 12:18 boinc_task_state.xml
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas 904049939 Nov 25 12:28 HITS.47556137._009366.pool.root.1
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas      6842 Nov 25 12:28 init_data.xml
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas        95 Nov 25 12:28 pilot_heartbeat.json
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas      1057 Nov 25 12:29 memory_monitor_summary.json
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas   2395000 Nov 25 12:29 log.47556137._009366.job.log.tgz.1
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas      8626 Nov 25 12:29 heartbeat.json
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:29 boinc_mmap_file
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:29 wrapper_checkpoint.txt
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas       822 Nov 25 12:29 pilotlog.txt
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas   5692712 Nov 25 12:29 log.47556137._009366.job.log.1
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas       353 Nov 25 12:29 output.list
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:29 runtime_log
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas   8110080 Nov 25 12:29 result.tar.gz
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas      9350 Nov 25 12:29 runtime_log.err
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas       661 Nov 25 12:29 NBlLDmxvYh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBILKDmOtf1Uo.diag
[2025-11-25 12:29:50] -rw-r--r--. 1 boincer umatlas     21380 Nov 25 12:29 stderr.txt
[2025-11-25 12:29:50] HITS file was successfully produced:
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas 904049939 Nov 25 12:28 shared/HITS.pool.root.1
[2025-11-25 12:29:50]  *** Contents of shared directory: ***
[2025-11-25 12:29:50] total 1289292
[2025-11-25 12:29:50] -rw-r--r--. 2 boincer umatlas 407453356 Nov 25 00:01 ATLAS.root_0
[2025-11-25 12:29:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 12:29:50] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:01 input.tar.gz
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas 904049939 Nov 25 12:28 HITS.pool.root.1
[2025-11-25 12:29:50] -rw-------. 1 boincer umatlas   8110080 Nov 25 12:29 result.tar.gz
12:30:13 (433828): run_atlas exited; CPU time 229438.304055
12:30:13 (433828): called boinc_finish(0)

</stderr_txt>
]]>

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