Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:39:11 (22650): wrapper (7.7.26015): starting
17:39:11 (22650): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 17:39:11] Arguments: --nthreads 12
[2025-11-24 17:39:11] Threads: 12
[2025-11-24 17:39:11] Checking for CVMFS
[2025-11-24 17:39:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 17:39:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 17:39:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 17:39:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 17:39:12] 2.11.2.0 723 115360 91776 153261 1 81 15085798 20275200 1 130560 0 49509096 99.913 6292546 33141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 17:39:12] CVMFS is ok
[2025-11-24 17:39:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 17:39:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 17:39:12] Further information can be found at the LHC@home message board.
[2025-11-24 17:39:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 17:39:12] Checking for apptainer binary...
[2025-11-24 17:39:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 17:39:12] Running /usr/bin/apptainer --version
[2025-11-24 17:39:12] apptainer version 1.3.2-1.el7
[2025-11-24 17:39:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 17:39:13] c-205-1.aglt2.org
[2025-11-24 17:39:13] apptainer works
[2025-11-24 17:39:13] Set ATHENA_PROC_NUMBER=12
[2025-11-24 17:39:13] Set ATHENA_CORE_NUMBER=12
[2025-11-24 17:39:13] Starting ATLAS job with PandaID=6895374679
[2025-11-24 17:39:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:11:03 (5207): wrapper (7.7.26015): starting
20:11:03 (5207): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 20:11:03] Arguments: --nthreads 12
[2025-11-24 20:11:03] Threads: 12
[2025-11-24 20:11:03] This job has been restarted, cleaning up previous attempt
[2025-11-24 20:11:03] Checking for CVMFS
[2025-11-24 20:11:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:11:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:11:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:11:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:11:03] 2.11.2.0 723 115511 91944 153264 1 56 15276918 20275200 1 130560 0 49609064 99.913 6296557 33147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 20:11:03] CVMFS is ok
[2025-11-24 20:11:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:11:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:11:03] Further information can be found at the LHC@home message board.
[2025-11-24 20:11:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:11:03] Checking for apptainer binary...
[2025-11-24 20:11:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:11:03] Running /usr/bin/apptainer --version
[2025-11-24 20:11:03] apptainer version 1.3.2-1.el7
[2025-11-24 20:11:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:11:05] c-205-1.aglt2.org
[2025-11-24 20:11:05] apptainer works
[2025-11-24 20:11:05] Set ATHENA_PROC_NUMBER=12
[2025-11-24 20:11:05] Set ATHENA_CORE_NUMBER=12
[2025-11-24 20:11:05] Starting ATLAS job with PandaID=6895374679
[2025-11-24 20:11:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:17:05]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:17:05] 2025-11-25 08:16:44,861 | INFO     | time since job start (25525s) is within the limit (172800.0s)
[2025-11-25 03:17:05] 2025-11-25 08:16:45,260 | INFO     | monitor loop #1911: job 0:6895374679 is in state 'finished'
[2025-11-25 03:17:05] 2025-11-25 08:16:45,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,766 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 03:17:05] 2025-11-25 08:16:46,769 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-25 03:17:05] 2025-11-25 08:16:46,772 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895374679/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,772 | INFO     | extracted standard info from prmon json
[2025-11-25 03:17:05] 2025-11-25 08:16:46,773 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:17:05] 2025-11-25 08:16:46,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:17:05] 2025-11-25 08:16:46,780 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:17:05] 2025-11-25 08:16:46,781 | INFO     | sum of square deviations: 22646787142.806282
[2025-11-25 03:17:05] 2025-11-25 08:16:46,784 | INFO     | sum of deviations: 443720151217.0577
[2025-11-25 03:17:05] 2025-11-25 08:16:46,785 | INFO     | mean x: 1764045827.7057416
[2025-11-25 03:17:05] 2025-11-25 08:16:46,785 | INFO     | mean y: 3419538.976076555
[2025-11-25 03:17:05] 2025-11-25 08:16:46,785 | INFO     | intersect: -34559658944.85418
[2025-11-25 03:17:05] 2025-11-25 08:16:46,785 | INFO     | chi2: 5.363703976436624
[2025-11-25 03:17:05] 2025-11-25 08:16:46,786 | INFO     | sum of square deviations: 21843812270.09216
[2025-11-25 03:17:05] 2025-11-25 08:16:46,789 | INFO     | sum of deviations: 585941358376.5156
[2025-11-25 03:17:05] 2025-11-25 08:16:46,790 | INFO     | mean x: 1764045675.2082324
[2025-11-25 03:17:05] 2025-11-25 08:16:46,790 | INFO     | mean y: 3446511.377723971
[2025-11-25 03:17:05] 2025-11-25 08:16:46,790 | INFO     | intersect: -47315551948.654755
[2025-11-25 03:17:05] 2025-11-25 08:16:46,790 | INFO     | chi2: 2.8594636308349366
[2025-11-25 03:17:05] 2025-11-25 08:16:46,790 | INFO     | current chi2=2.8594636308349366 (change=46.688638235874066 %)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,791 | INFO     | sum of square deviations: 21060022110.291637
[2025-11-25 03:17:05] 2025-11-25 08:16:46,794 | INFO     | sum of deviations: 602123627121.8744
[2025-11-25 03:17:05] 2025-11-25 08:16:46,795 | INFO     | mean x: 1764045522.7083333
[2025-11-25 03:17:05] 2025-11-25 08:16:46,795 | INFO     | mean y: 3449621.007352941
[2025-11-25 03:17:05] 2025-11-25 08:16:46,795 | INFO     | intersect: -50432085677.98838
[2025-11-25 03:17:05] 2025-11-25 08:16:46,795 | INFO     | chi2: 2.6623953821735826
[2025-11-25 03:17:05] 2025-11-25 08:16:46,795 | INFO     | current chi2=2.6623953821735826 (change=6.891790702853314 %)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,796 | INFO     | right removable region: 407
[2025-11-25 03:17:05] 2025-11-25 08:16:46,796 | INFO     | sum of square deviations: 21843759810.09215
[2025-11-25 03:17:05] 2025-11-25 08:16:46,800 | INFO     | sum of deviations: 300376721086.7436
[2025-11-25 03:17:05] 2025-11-25 08:16:46,800 | INFO     | mean x: 1764045980.2082324
[2025-11-25 03:17:05] 2025-11-25 08:16:46,800 | INFO     | mean y: 3446684.8401937047
[2025-11-25 03:17:05] 2025-11-25 08:16:46,800 | INFO     | intersect: -24254206392.64821
[2025-11-25 03:17:05] 2025-11-25 08:16:46,800 | INFO     | chi2: 2.909894477403924
[2025-11-25 03:17:05] 2025-11-25 08:16:46,801 | INFO     | current chi2=2.909894477403924 (change=45.748413965658266 %)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,801 | INFO     | sum of square deviations: 21059942139.872467
[2025-11-25 03:17:05] 2025-11-25 08:16:46,805 | INFO     | sum of deviations: 261978260851.41672
[2025-11-25 03:17:05] 2025-11-25 08:16:46,805 | INFO     | mean x: 1764046132.7107842
[2025-11-25 03:17:05] 2025-11-25 08:16:46,805 | INFO     | mean y: 3454151.7916666665
[2025-11-25 03:17:05] 2025-11-25 08:16:46,805 | INFO     | intersect: -21940658269.783928
[2025-11-25 03:17:05] 2025-11-25 08:16:46,805 | INFO     | chi2: 2.8318997731727147
[2025-11-25 03:17:05] 2025-11-25 08:16:46,806 | INFO     | current chi2=2.8318997731727147 (change=2.6803275801530986 %)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,806 | INFO     | left removable region: 20
[2025-11-25 03:17:05] 2025-11-25 08:16:46,806 | INFO     | sum of square deviations: 17972544867.76763
[2025-11-25 03:17:05] 2025-11-25 08:16:46,809 | INFO     | sum of deviations: 363659862449.1864
[2025-11-25 03:17:05] 2025-11-25 08:16:46,810 | INFO     | mean x: 1764046102.2170544
[2025-11-25 03:17:05] 2025-11-25 08:16:46,810 | INFO     | mean y: 3497106.426356589
[2025-11-25 03:17:05] 2025-11-25 08:16:46,810 | INFO     | intersect: -35690544422.26004
[2025-11-25 03:17:05] 2025-11-25 08:16:46,810 | INFO     | chi2: 0.05962970216244105
[2025-11-25 03:17:05] 2025-11-25 08:16:46,810 | INFO     | current memory leak: 20.23 B/s (using 387 data points, chi2=0.06)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,811 | INFO     | could have reported an average CPU frequency of 2365 MHz (18 samples)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,811 | INFO     | ..............................
[2025-11-25 03:17:05] 2025-11-25 08:16:46,811 | INFO     | . Timing measurements:
[2025-11-25 03:17:05] 2025-11-25 08:16:46,811 | INFO     | . get job = 0 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,811 | INFO     | . initial setup = 1 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,811 | INFO     | . payload setup = 7 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,812 | INFO     | . stage-in = 0 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,812 | INFO     | . payload execution = 25489 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,812 | INFO     | . stage-out = 3 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,812 | INFO     | . log creation = 0 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,812 | INFO     | ..............................
[2025-11-25 03:17:05] 2025-11-25 08:16:46,869 | INFO     | time since job start (25527s) is within the limit (172800.0s)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,893 | INFO     | 
[2025-11-25 03:17:05] 2025-11-25 08:16:46,893 | INFO     | job summary report
[2025-11-25 03:17:05] 2025-11-25 08:16:46,893 | INFO     | --------------------------------------------------
[2025-11-25 03:17:05] 2025-11-25 08:16:46,893 | INFO     | PanDA job id: 6895374679
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | task id: 47556137
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | errors: (none)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | pilot state: finished 
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | transexitcode: 0
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | exeerrorcode: 0
[2025-11-25 03:17:05] 2025-11-25 08:16:46,894 | INFO     | exeerrordiag: 
[2025-11-25 03:17:05] 2025-11-25 08:16:46,895 | INFO     | exitcode: 0
[2025-11-25 03:17:05] 2025-11-25 08:16:46,895 | INFO     | exitmsg: OK
[2025-11-25 03:17:05] 2025-11-25 08:16:46,895 | INFO     | cpuconsumptiontime: 292431 s
[2025-11-25 03:17:05] 2025-11-25 08:16:46,895 | INFO     | nevents: 1000
[2025-11-25 03:17:05] 2025-11-25 08:16:46,895 | INFO     | neventsw: 0
[2025-11-25 03:17:05] 2025-11-25 08:16:46,895 | INFO     | pid: 16376
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | pgrp: 16376
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | corecount: 12
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | event service: False
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | sizes: {0: 2284310, 5: 2284572, 11: 2284628, 25500: 2321781, 25501: 2321780, 25505: 2330830, 25506: 2331014, 25511: 2331260}
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | --------------------------------------------------
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | 
[2025-11-25 03:17:05] 2025-11-25 08:16:46,896 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 03:17:05] 2025-11-25 08:16:46,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,919 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,919 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,922 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,922 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:17:05] 2025-11-25 08:16:46,922 | INFO     | job 6895374679 has completed (purged errors)
[2025-11-25 03:17:05] 2025-11-25 08:16:46,923 | INFO     | overall cleanup function is called
[2025-11-25 03:17:05] 2025-11-25 08:16:47,939 | INFO     | --- collectZombieJob: --- 10, [16376]
[2025-11-25 03:17:05] 2025-11-25 08:16:47,940 | INFO     | zombie collector waiting for pid 16376
[2025-11-25 03:17:05] 2025-11-25 08:16:47,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:17:05] 2025-11-25 08:16:47,940 | INFO     | collected zombie processes
[2025-11-25 03:17:05] 2025-11-25 08:16:47,940 | INFO     | will attempt to kill all subprocesses of pid=16376
[2025-11-25 03:17:05] 2025-11-25 08:16:48,033 | INFO     | process IDs to be killed: [16376] (in reverse order)
[2025-11-25 03:17:05] 2025-11-25 08:16:48,084 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:17:05] 2025-11-25 08:16:48,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:17:05] 2025-11-25 08:16:48,087 | INFO     | did not find any defunct processes belonging to 16376
[2025-11-25 03:17:05] 2025-11-25 08:16:48,090 | INFO     | did not find any defunct processes belonging to 16376
[2025-11-25 03:17:05] 2025-11-25 08:16:48,092 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:17:05] 2025-11-25 08:16:48,092 | INFO     | ready for new job
[2025-11-25 03:17:05] 2025-11-25 08:16:48,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:17:05] 2025-11-25 08:16:48,094 | INFO     | ***************************************
[2025-11-25 03:17:05] 2025-11-25 08:16:48,094 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:17:05] 2025-11-25 08:16:48,094 | INFO     | ***************************************
[2025-11-25 03:17:05] 2025-11-25 08:16:48,094 | INFO     | 
[2025-11-25 03:17:05] 2025-11-25 08:16:48,095 | INFO     | architecture information:
[2025-11-25 03:17:05] 2025-11-25 08:16:48,095 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:17:05] 2025-11-25 08:16:48,110 | INFO     | cat /etc/os-release:
[2025-11-25 03:17:05] NAME="CentOS Linux"
[2025-11-25 03:17:05] VERSION="7 (Core)"
[2025-11-25 03:17:05] ID="centos"
[2025-11-25 03:17:05] ID_LIKE="rhel fedora"
[2025-11-25 03:17:05] VERSION_ID="7"
[2025-11-25 03:17:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:17:05] ANSI_COLOR="0;31"
[2025-11-25 03:17:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:17:05] HOME_URL="https://www.centos.org/"
[2025-11-25 03:17:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:17:05] 
[2025-11-25 03:17:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:17:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:17:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:17:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:17:05] 
[2025-11-25 03:17:05] 2025-11-25 08:16:48,110 | INFO     | ***************************************
[2025-11-25 03:17:05] 2025-11-25 08:16:48,613 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 03:17:05] 2025-11-25 08:16:48,630 | INFO     | sufficient remaining disk space (28388098048 B)
[2025-11-25 03:17:05] 2025-11-25 08:16:48,630 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:17:05] 2025-11-25 08:16:48,631 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:17:05] 2025-11-25 08:16:48,631 | INFO     | update_server=False
[2025-11-25 03:17:05] 2025-11-25 08:16:48,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:17:05] 2025-11-25 08:16:48,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:17:05] 2025-11-25 08:16:48,631 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 03:17:05] 2025-11-25 08:16:48,632 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:17:05] 2025-11-25 08:16:48,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:17:05] 2025-11-25 08:16:48,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:17:05] 2025-11-25 08:16:48,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:17:05] 2025-11-25 08:16:48,734 | INFO     | all job control threads have been joined
[2025-11-25 03:17:05] 2025-11-25 08:16:48,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:17:05] 2025-11-25 08:16:48,768 | INFO     | aborting loop
[2025-11-25 03:17:05] 2025-11-25 08:16:48,821 | INFO     | all data control threads have been joined
[2025-11-25 03:17:05] 2025-11-25 08:16:48,866 | INFO     | all payload control threads have been joined
[2025-11-25 03:17:05] 2025-11-25 08:16:49,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:17:05] 2025-11-25 08:16:49,636 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,637 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,739 | INFO     | [job] control thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,768 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,773 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,826 | INFO     | [data] control thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,872 | INFO     | [payload] control thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,884 | INFO     | [job] validate thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:49,950 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:50,143 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:50,256 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:50,531 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:50,885 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:51,067 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:51,222 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:16:52,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:17:05] 2025-11-25 08:17:00,407 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:17:05] 2025-11-25 08:17:00,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140602636105536)>', '<ExcThread(monitor, started 140601928447744)>']
[2025-11-25 03:17:05] 2025-11-25 08:17:00,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:17:05] 2025-11-25 08:17:00,694 | INFO     | [monitor] control thread has ended
[2025-11-25 03:17:05] 2025-11-25 08:17:05,627 | INFO     | all workflow threads have been joined
[2025-11-25 03:17:05] 2025-11-25 08:17:05,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:17:05] 2025-11-25 08:17:05,641 | INFO     | traces error code: 0
[2025-11-25 03:17:05] 2025-11-25 08:17:05,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:17:05] 2025-11-25 08:17:05,722 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:17:05] 2025-11-25 08:17:05,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:17:05] 2025-11-25 08:17:05,730 [wrapper] pilotpid: 8921
[2025-11-25 03:17:05] 2025-11-25 08:17:05,734 [wrapper] Pilot exit status: 0
[2025-11-25 03:17:05] 2025-11-25 08:17:05,749 [wrapper] pandaids: 6895374679 6895374679
[2025-11-25 03:17:05] 2025-11-25 08:17:05,789 [wrapper] cleanup supervisor_pilot 19420 8922
[2025-11-25 03:17:05] 2025-11-25 08:17:05,793 [wrapper] Test setup, not cleaning
[2025-11-25 03:17:05] 2025-11-25 08:17:05,797 [wrapper] apfmon messages muted
[2025-11-25 03:17:05] 2025-11-25 08:17:05,801 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:17:05] 2025-11-25 08:17:05,806 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:17:05]  *** Error codes and diagnostics ***
[2025-11-25 03:17:05]     "exeErrorCode": 0,
[2025-11-25 03:17:05]     "exeErrorDiag": "",
[2025-11-25 03:17:05]     "pilotErrorCode": 0,
[2025-11-25 03:17:05]     "pilotErrorDiag": "",
[2025-11-25 03:17:05]  *** Listing of results directory ***
[2025-11-25 03:17:05] total 1697296
[2025-11-25 03:17:05] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 18:11 pilot3.tar.gz
[2025-11-25 03:17:05] -rwx------ 1 boincer umatlas     36292 Nov 23 18:26 runpilot2-wrapper.sh
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 18:26 queuedata.json
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas       100 Nov 24 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:17:05] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 17:39 run_atlas
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas       105 Nov 24 17:39 job.xml
[2025-11-25 03:17:05] -rw-r--r-- 3 boincer umatlas 408589303 Nov 24 17:39 EVNT.47483658._000944.pool.root.1
[2025-11-25 03:17:05] -rw-r--r-- 3 boincer umatlas 408589303 Nov 24 17:39 ATLAS.root_0
[2025-11-25 03:17:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 17:39 start_atlas.sh
[2025-11-25 03:17:05] drwxrwx--x 2 boincer umatlas      4096 Nov 24 17:39 shared
[2025-11-25 03:17:05] -rw-r--r-- 2 boincer umatlas    590099 Nov 24 17:39 input.tar.gz
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas         0 Nov 24 17:39 boinc_lockfile
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas      2786 Nov 24 20:11 pandaJob.out
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas        57 Nov 24 20:11 setup.sh.local
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas    991801 Nov 24 20:11 agis_schedconf.cvmfs.json
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas       533 Nov 25 03:08 boinc_task_state.xml
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 03:12 init_data.xml
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas 905392190 Nov 25 03:16 HITS.47556137._009308.pool.root.1
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas        96 Nov 25 03:16 pilot_heartbeat.json
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas      1061 Nov 25 03:16 memory_monitor_summary.json
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas   1516227 Nov 25 03:16 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas   2174820 Nov 25 03:16 log.47556137._009308.job.log.tgz.1
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas      8665 Nov 25 03:16 heartbeat.json
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 03:17 boinc_mmap_file
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas        29 Nov 25 03:17 wrapper_checkpoint.txt
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas      4552 Nov 25 03:17 pilotlog.txt
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas   3593271 Nov 25 03:17 log.47556137._009308.job.log.1
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas       353 Nov 25 03:17 output.list
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas       620 Nov 25 03:17 runtime_log
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas   5785600 Nov 25 03:17 result.tar.gz
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas      9425 Nov 25 03:17 runtime_log.err
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas       794 Nov 25 03:17 7t7KDmjeYh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWHLKDmhmSNTo.diag
[2025-11-25 03:17:05] -rw-r--r-- 1 boincer umatlas     23411 Nov 25 03:17 stderr.txt
[2025-11-25 03:17:05] HITS file was successfully produced:
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas 905392190 Nov 25 03:16 shared/HITS.pool.root.1
[2025-11-25 03:17:05]  *** Contents of shared directory: ***
[2025-11-25 03:17:05] total 1289444
[2025-11-25 03:17:05] -rw-r--r-- 3 boincer umatlas 408589303 Nov 24 17:39 ATLAS.root_0
[2025-11-25 03:17:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 17:39 start_atlas.sh
[2025-11-25 03:17:05] -rw-r--r-- 2 boincer umatlas    590099 Nov 24 17:39 input.tar.gz
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas 905392190 Nov 25 03:16 HITS.pool.root.1
[2025-11-25 03:17:05] -rw------- 1 boincer umatlas   5785600 Nov 25 03:17 result.tar.gz
03:17:07 (5207): run_atlas exited; CPU time 285542.225400
03:17:07 (5207): called boinc_finish(0)

</stderr_txt>
]]>

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