Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:42:55 (1667281): wrapper (7.7.26015): starting
17:42:55 (1667281): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 17:42:55] Arguments: --nthreads 9
[2025-11-24 17:42:55] Threads: 9
[2025-11-24 17:42:55] Checking for CVMFS
[2025-11-24 17:42:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 17:42:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 17:42:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 17:42:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 17:42:56] 2.13.3.0 9428 26089 327412 153261 2 365 15895783 18491392 30645 16776704 0 129131410 99.313 213117619 33465 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 17:42:56] CVMFS is ok
[2025-11-24 17:42:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 17:42:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 17:42:56] Further information can be found at the LHC@home message board.
[2025-11-24 17:42:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 17:42:56] Checking for apptainer binary...
[2025-11-24 17:42:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 17:42:56] Running /usr/bin/apptainer --version
[2025-11-24 17:42:56] apptainer version 1.4.4-1.el9
[2025-11-24 17:42:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 17:42:56] c-8-38.aglt2.org
[2025-11-24 17:42:56] apptainer works
[2025-11-24 17:42:56] Set ATHENA_PROC_NUMBER=9
[2025-11-24 17:42:56] Set ATHENA_CORE_NUMBER=9
[2025-11-24 17:42:56] Starting ATLAS job with PandaID=6895362725
[2025-11-24 17:42:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:08:59]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:08:59] 2025-11-25 14:08:16,385 | INFO     | sum of deviations: 2190230119141.2783
[2025-11-25 09:08:59] 2025-11-25 14:08:16,385 | INFO     | mean x: 1764051926.0341034
[2025-11-25 09:08:59] 2025-11-25 14:08:16,385 | INFO     | mean y: 3135139.700770077
[2025-11-25 09:08:59] 2025-11-25 14:08:16,394 | INFO     | intersect: -16586270839.970549
[2025-11-25 09:08:59] 2025-11-25 14:08:16,395 | INFO     | chi2: 7.632994449726587
[2025-11-25 09:08:59] 2025-11-25 14:08:16,400 | INFO     | sum of square deviations: 229078572320.56656
[2025-11-25 09:08:59] 2025-11-25 14:08:16,431 | INFO     | sum of deviations: 2537344448331.251
[2025-11-25 09:08:59] 2025-11-25 14:08:16,432 | INFO     | mean x: 1764051773.539823
[2025-11-25 09:08:59] 2025-11-25 14:08:16,432 | INFO     | mean y: 3148993.048672566
[2025-11-25 09:08:59] 2025-11-25 14:08:16,432 | INFO     | intersect: -19536028891.719006
[2025-11-25 09:08:59] 2025-11-25 14:08:16,433 | INFO     | chi2: 4.1710565533298345
[2025-11-25 09:08:59] 2025-11-25 14:08:16,433 | INFO     | current chi2=4.1710565533298345 (change=45.35491174791511 %)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,435 | INFO     | sum of square deviations: 225298769535.1299
[2025-11-25 09:08:59] 2025-11-25 14:08:16,476 | INFO     | sum of deviations: 2741460159966.908
[2025-11-25 09:08:59] 2025-11-25 14:08:16,476 | INFO     | mean x: 1764051621.0456061
[2025-11-25 09:08:59] 2025-11-25 14:08:16,476 | INFO     | mean y: 3157219.3437152393
[2025-11-25 09:08:59] 2025-11-25 14:08:16,477 | INFO     | intersect: -21462016555.01861
[2025-11-25 09:08:59] 2025-11-25 14:08:16,478 | INFO     | chi2: 2.6617257160514503
[2025-11-25 09:08:59] 2025-11-25 14:08:16,478 | INFO     | current chi2=2.6617257160514503 (change=36.18581570354055 %)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,479 | INFO     | sum of square deviations: 221560343505.8847
[2025-11-25 09:08:59] 2025-11-25 14:08:16,524 | INFO     | sum of deviations: 2754460600161.6562
[2025-11-25 09:08:59] 2025-11-25 14:08:16,524 | INFO     | mean x: 1764051468.5425055
[2025-11-25 09:08:59] 2025-11-25 14:08:16,524 | INFO     | mean y: 3157745.4563758387
[2025-11-25 09:08:59] 2025-11-25 14:08:16,524 | INFO     | intersect: -21927708536.2552
[2025-11-25 09:08:59] 2025-11-25 14:08:16,530 | INFO     | chi2: 2.55936038429301
[2025-11-25 09:08:59] 2025-11-25 14:08:16,530 | INFO     | current chi2=2.55936038429301 (change=3.845825704020865 %)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,530 | INFO     | right removable region: 893
[2025-11-25 09:08:59] 2025-11-25 14:08:16,531 | INFO     | sum of square deviations: 229077998920.56635
[2025-11-25 09:08:59] 2025-11-25 14:08:16,625 | INFO     | sum of deviations: 1911739245401.106
[2025-11-25 09:08:59] 2025-11-25 14:08:16,632 | INFO     | mean x: 1764052078.539823
[2025-11-25 09:08:59] 2025-11-25 14:08:16,632 | INFO     | mean y: 3146236.163716814
[2025-11-25 09:08:59] 2025-11-25 14:08:16,632 | INFO     | intersect: -14718510166.315023
[2025-11-25 09:08:59] 2025-11-25 14:08:16,633 | INFO     | chi2: 5.360786443551771
[2025-11-25 09:08:59] 2025-11-25 14:08:16,634 | INFO     | current chi2=5.360786443551771 (change=29.768238679332537 %)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,635 | INFO     | sum of square deviations: 225297898460.55826
[2025-11-25 09:08:59] 2025-11-25 14:08:16,696 | INFO     | sum of deviations: 1842093823584.0908
[2025-11-25 09:08:59] 2025-11-25 14:08:16,696 | INFO     | mean x: 1764052231.0400445
[2025-11-25 09:08:59] 2025-11-25 14:08:16,696 | INFO     | mean y: 3149044.7196885427
[2025-11-25 09:08:59] 2025-11-25 14:08:16,696 | INFO     | intersect: -14420197739.615646
[2025-11-25 09:08:59] 2025-11-25 14:08:16,698 | INFO     | chi2: 5.324228142461378
[2025-11-25 09:08:59] 2025-11-25 14:08:16,698 | INFO     | current chi2=5.324228142461378 (change=0.6819577962178875 %)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,698 | INFO     | left removable region: 20
[2025-11-25 09:08:59] 2025-11-25 14:08:16,699 | INFO     | sum of square deviations: 206310530918.8817
[2025-11-25 09:08:59] 2025-11-25 14:08:16,756 | INFO     | sum of deviations: 2311771120459.5884
[2025-11-25 09:08:59] 2025-11-25 14:08:16,757 | INFO     | mean x: 1764052048.0492554
[2025-11-25 09:08:59] 2025-11-25 14:08:16,757 | INFO     | mean y: 3175696.9862542953
[2025-11-25 09:08:59] 2025-11-25 14:08:16,757 | INFO     | intersect: -19763554394.321117
[2025-11-25 09:08:59] 2025-11-25 14:08:16,758 | INFO     | chi2: 0.217261993064718
[2025-11-25 09:08:59] 2025-11-25 14:08:16,759 | INFO     | current memory leak: 11.21 B/s (using 873 data points, chi2=0.22)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | could have reported an average CPU frequency of 2600 MHz (34 samples)
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | ..............................
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | . Timing measurements:
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | . get job = 0 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | . initial setup = 3 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | . payload setup = 9 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,760 | INFO     | . stage-in = 0 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,761 | INFO     | . payload execution = 55445 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,761 | INFO     | . stage-out = 7 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,761 | INFO     | . log creation = 1 s
[2025-11-25 09:08:59] 2025-11-25 14:08:16,761 | INFO     | ..............................
[2025-11-25 09:08:59] 2025-11-25 14:08:17,276 | INFO     | PID=1671545 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 09:08:59] 2025-11-25 14:08:17,277 | INFO     | .. there are 43 such processes running
[2025-11-25 09:08:59] 2025-11-25 14:08:17,382 | INFO     | 
[2025-11-25 09:08:59] 2025-11-25 14:08:17,382 | INFO     | job summary report
[2025-11-25 09:08:59] 2025-11-25 14:08:17,382 | INFO     | --------------------------------------------------
[2025-11-25 09:08:59] 2025-11-25 14:08:17,382 | INFO     | PanDA job id: 6895362725
[2025-11-25 09:08:59] 2025-11-25 14:08:17,382 | INFO     | task id: 47556149
[2025-11-25 09:08:59] 2025-11-25 14:08:17,382 | INFO     | errors: (none)
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | pilot state: finished 
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | transexitcode: 0
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | exeerrorcode: 0
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | exeerrordiag: 
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | exitcode: 0
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | exitmsg: OK
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | cpuconsumptiontime: 303286 s
[2025-11-25 09:08:59] 2025-11-25 14:08:17,383 | INFO     | nevents: 1000
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | neventsw: 0
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | pid: 1677943
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | pgrp: 1677943
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | corecount: 9
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | event service: False
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | sizes: {0: 2284077, 1: 2284332, 7: 2284594, 12: 2284622, 55457: 2336371, 55465: 2345370, 55469: 2345554, 55483: 2345800}
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | --------------------------------------------------
[2025-11-25 09:08:59] 2025-11-25 14:08:17,388 | INFO     | 
[2025-11-25 09:08:59] 2025-11-25 14:08:17,389 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 09:08:59] 2025-11-25 14:08:17,449 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,449 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,451 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:08:59] 2025-11-25 14:08:17,452 | INFO     | job 6895362725 has completed (purged errors)
[2025-11-25 09:08:59] 2025-11-25 14:08:17,452 | INFO     | overall cleanup function is called
[2025-11-25 09:08:59] 2025-11-25 14:08:18,489 | INFO     | --- collectZombieJob: --- 10, [1677943]
[2025-11-25 09:08:59] 2025-11-25 14:08:18,489 | INFO     | zombie collector waiting for pid 1677943
[2025-11-25 09:08:59] 2025-11-25 14:08:18,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:08:59] 2025-11-25 14:08:18,489 | INFO     | collected zombie processes
[2025-11-25 09:08:59] 2025-11-25 14:08:18,489 | INFO     | will attempt to kill all subprocesses of pid=1677943
[2025-11-25 09:08:59] 2025-11-25 14:08:19,351 | INFO     | process IDs to be killed: [1677943] (in reverse order)
[2025-11-25 09:08:59] 2025-11-25 14:08:19,628 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:08:59] 2025-11-25 14:08:19,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:08:59] 2025-11-25 14:08:19,646 | INFO     | did not find any defunct processes belonging to 1677943
[2025-11-25 09:08:59] 2025-11-25 14:08:19,672 | INFO     | did not find any defunct processes belonging to 1677943
[2025-11-25 09:08:59] 2025-11-25 14:08:19,677 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:08:59] 2025-11-25 14:08:19,677 | INFO     | ready for new job
[2025-11-25 09:08:59] 2025-11-25 14:08:19,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:08:59] 2025-11-25 14:08:19,688 | INFO     | ***************************************
[2025-11-25 09:08:59] 2025-11-25 14:08:19,688 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:08:59] 2025-11-25 14:08:19,688 | INFO     | ***************************************
[2025-11-25 09:08:59] 2025-11-25 14:08:19,688 | INFO     | 
[2025-11-25 09:08:59] 2025-11-25 14:08:19,690 | INFO     | architecture information:
[2025-11-25 09:08:59] 2025-11-25 14:08:19,700 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:08:59] 2025-11-25 14:08:19,727 | INFO     | cat /etc/os-release:
[2025-11-25 09:08:59] NAME="CentOS Linux"
[2025-11-25 09:08:59] VERSION="7 (Core)"
[2025-11-25 09:08:59] ID="centos"
[2025-11-25 09:08:59] ID_LIKE="rhel fedora"
[2025-11-25 09:08:59] VERSION_ID="7"
[2025-11-25 09:08:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:08:59] ANSI_COLOR="0;31"
[2025-11-25 09:08:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:08:59] HOME_URL="https://www.centos.org/"
[2025-11-25 09:08:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:08:59] 
[2025-11-25 09:08:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:08:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:08:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:08:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:08:59] 
[2025-11-25 09:08:59] 2025-11-25 14:08:19,727 | INFO     | ***************************************
[2025-11-25 09:08:59] 2025-11-25 14:08:20,233 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 09:08:59] 2025-11-25 14:08:20,289 | INFO     | sufficient remaining disk space (92294610944 B)
[2025-11-25 09:08:59] 2025-11-25 14:08:20,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:08:59] 2025-11-25 14:08:20,291 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:08:59] 2025-11-25 14:08:20,291 | INFO     | update_server=False
[2025-11-25 09:08:59] 2025-11-25 14:08:20,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:08:59] 2025-11-25 14:08:20,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:08:59] 2025-11-25 14:08:20,401 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 09:08:59] 2025-11-25 14:08:20,401 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 09:08:59] 2025-11-25 14:08:20,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:08:59] 2025-11-25 14:08:20,401 | INFO     | will abort loop
[2025-11-25 09:08:59] 2025-11-25 14:08:20,481 | INFO     | all payload control threads have been joined
[2025-11-25 09:08:59] 2025-11-25 14:08:21,081 | INFO     | all data control threads have been joined
[2025-11-25 09:08:59] 2025-11-25 14:08:21,297 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:21,410 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:21,487 | INFO     | [payload] control thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:21,876 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:21,887 | INFO     | all job control threads have been joined
[2025-11-25 09:08:59] 2025-11-25 14:08:21,922 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,089 | INFO     | [data] control thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:08:59] 2025-11-25 14:08:22,300 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,378 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:08:59] 2025-11-25 14:08:22,423 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,423 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,424 | INFO     | [job] validate thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,580 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,821 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:22,894 | INFO     | [job] control thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:23,145 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:26,405 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:08:59] 2025-11-25 14:08:50,254 | INFO     | PID=1671545 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 09:08:59] 2025-11-25 14:08:50,255 | INFO     | .. there are 43 such processes running
[2025-11-25 09:08:59] 2025-11-25 14:08:50,256 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:08:59] 2025-11-25 14:08:50,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:08:59] 2025-11-25 14:08:50,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:08:59] 2025-11-25 14:08:52,769 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:08:59] 2025-11-25 14:08:53,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956857210688)>', '<ExcThread(monitor, started 139955988846336)>']
[2025-11-25 09:08:59] 2025-11-25 14:08:54,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:08:59] 2025-11-25 14:08:54,283 | INFO     | [monitor] control thread has ended
[2025-11-25 09:08:59] 2025-11-25 14:08:58,827 | INFO     | all workflow threads have been joined
[2025-11-25 09:08:59] 2025-11-25 14:08:58,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:08:59] 2025-11-25 14:08:58,828 | INFO     | traces error code: 0
[2025-11-25 09:08:59] 2025-11-25 14:08:58,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:08:59] 2025-11-25 14:08:58,989 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:08:59] 2025-11-25 14:08:59,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:08:59] 2025-11-25 14:08:59,075 [wrapper] pilotpid: 1671545
[2025-11-25 09:08:59] 2025-11-25 14:08:59,087 [wrapper] Pilot exit status: 0
[2025-11-25 09:08:59] 2025-11-25 14:08:59,101 [wrapper] pandaids: 6895362725
[2025-11-25 09:08:59] 2025-11-25 14:08:59,187 [wrapper] cleanup supervisor_pilot    3093 1671546
[2025-11-25 09:08:59] 2025-11-25 14:08:59,190 [wrapper] Test setup, not cleaning
[2025-11-25 09:08:59] 2025-11-25 14:08:59,194 [wrapper] apfmon messages muted
[2025-11-25 09:08:59] 2025-11-25 14:08:59,197 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:08:59] 2025-11-25 14:08:59,199 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:08:59]  *** Error codes and diagnostics ***
[2025-11-25 09:08:59]     "exeErrorCode": 0,
[2025-11-25 09:08:59]     "exeErrorDiag": "",
[2025-11-25 09:08:59]     "pilotErrorCode": 0,
[2025-11-25 09:08:59]     "pilotErrorDiag": "",
[2025-11-25 09:08:59]  *** Listing of results directory ***
[2025-11-25 09:08:59] total 1321964
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:56 pilot3.tar.gz
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:11 queuedata.json
[2025-11-25 09:08:59] -rwx------. 1 boincer umatlas     36292 Nov 23 10:12 runpilot2-wrapper.sh
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas       100 Nov 24 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:08:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 17:42 run_atlas
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas       105 Nov 24 17:42 job.xml
[2025-11-25 09:08:59] -rw-r--r--. 2 boincer umatlas 409053653 Nov 24 17:42 EVNT.47483658._001172.pool.root.1
[2025-11-25 09:08:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 17:42 start_atlas.sh
[2025-11-25 09:08:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 17:42 shared
[2025-11-25 09:08:59] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 17:42 input.tar.gz
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas         0 Nov 24 17:42 boinc_lockfile
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas      2783 Nov 24 17:42 pandaJob.out
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas        57 Nov 24 17:42 setup.sh.local
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas    991801 Nov 24 17:43 agis_schedconf.cvmfs.json
[2025-11-25 09:08:59] drwx------. 5 boincer umatlas      4096 Nov 24 17:43 pilot3
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas       533 Nov 25 08:53 boinc_task_state.xml
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas      6663 Nov 25 09:04 init_data.xml
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas 921713598 Nov 25 09:07 HITS.47556149._001581.pool.root.1
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas      1058 Nov 25 09:07 memory_monitor_summary.json
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas   1516240 Nov 25 09:07 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas   2197521 Nov 25 09:07 log.47556149._001581.job.log.tgz.1
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas      8624 Nov 25 09:08 heartbeat.json
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas        95 Nov 25 09:08 pilot_heartbeat.json
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 09:08 boinc_mmap_file
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas        29 Nov 25 09:08 wrapper_checkpoint.txt
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas      5010 Nov 25 09:08 pilotlog.txt
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas   7302046 Nov 25 09:08 log.47556149._001581.job.log.1
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas       353 Nov 25 09:08 output.list
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas       620 Nov 25 09:08 runtime_log
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas   9523200 Nov 25 09:08 result.tar.gz
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 09:08 runtime_log.err
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas       658 Nov 25 09:08 CzuLDmiwQh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3zKKDm9gQifn.diag
[2025-11-25 09:08:59] -rw-r--r--. 1 boincer umatlas     21286 Nov 25 09:08 stderr.txt
[2025-11-25 09:08:59] HITS file was successfully produced:
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas 921713598 Nov 25 09:07 shared/HITS.pool.root.1
[2025-11-25 09:08:59]  *** Contents of shared directory: ***
[2025-11-25 09:08:59] total 1309484
[2025-11-25 09:08:59] -rw-r--r--. 2 boincer umatlas 409053653 Nov 24 17:42 ATLAS.root_0
[2025-11-25 09:08:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 17:42 start_atlas.sh
[2025-11-25 09:08:59] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 17:42 input.tar.gz
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas 921713598 Nov 25 09:07 HITS.pool.root.1
[2025-11-25 09:08:59] -rw-------. 1 boincer umatlas   9523200 Nov 25 09:08 result.tar.gz
09:09:00 (1667281): run_atlas exited; CPU time 305423.588803
09:09:00 (1667281): called boinc_finish(0)

</stderr_txt>
]]>

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