Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:58 (25979): wrapper (7.7.26015): starting
00:01:58 (25979): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:01:58] Arguments: --nthreads 12
[2025-11-25 00:01:58] Threads: 12
[2025-11-25 00:01:58] Checking for CVMFS
[2025-11-25 00:01:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:00] 2.13.3.0 11393 28165 328540 153270 0 162 29577482 32935936 21533 16776704 0 86662937 99.372 137789443 40703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:02:00] CVMFS is ok
[2025-11-25 00:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:00] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:00] Checking for apptainer binary...
[2025-11-25 00:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:00] Running /usr/bin/apptainer --version
[2025-11-25 00:02:00] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:01] c6-5-37-2.aglt2.org
[2025-11-25 00:02:01] apptainer works
[2025-11-25 00:02:01] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:02:01] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:02:01] Starting ATLAS job with PandaID=6895361821
[2025-11-25 00:02:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:46:58]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:46:58] 2025-11-25 15:52:43,783 | INFO     | time since job start (38988s) is within the limit (172800.0s)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,597 | INFO     | monitor loop #2563: job 0:6895361821 is in state 'finished'
[2025-11-25 11:46:58] 2025-11-25 15:52:44,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,734 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 11:46:58] 2025-11-25 15:52:44,743 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2832.987214285714
[2025-11-25 11:46:58] 2025-11-25 15:52:44,752 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895361821/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,753 | INFO     | extracted standard info from prmon json
[2025-11-25 11:46:58] 2025-11-25 15:52:44,753 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:46:58] 2025-11-25 15:52:44,753 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:46:58] 2025-11-25 15:52:44,764 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:46:58] 2025-11-25 15:52:44,765 | INFO     | sum of square deviations: 80140380499.0212
[2025-11-25 11:46:58] 2025-11-25 15:52:44,774 | INFO     | sum of deviations: 1083778626284.795
[2025-11-25 11:46:58] 2025-11-25 15:52:44,774 | INFO     | mean x: 1764066506.8367348
[2025-11-25 11:46:58] 2025-11-25 15:52:44,774 | INFO     | mean y: 3414220.4788069073
[2025-11-25 11:46:58] 2025-11-25 15:52:44,774 | INFO     | intersect: -23852943380.39238
[2025-11-25 11:46:58] 2025-11-25 15:52:44,775 | INFO     | chi2: 7.803204802602741
[2025-11-25 11:46:58] 2025-11-25 15:52:44,777 | INFO     | sum of square deviations: 78268181292.01872
[2025-11-25 11:46:58] 2025-11-25 15:52:44,791 | INFO     | sum of deviations: 1315507631444.0483
[2025-11-25 11:46:58] 2025-11-25 15:52:44,791 | INFO     | mean x: 1764066354.351266
[2025-11-25 11:46:58] 2025-11-25 15:52:44,792 | INFO     | mean y: 3433086.9367088606
[2025-11-25 11:46:58] 2025-11-25 15:52:44,792 | INFO     | intersect: -29646454175.22477
[2025-11-25 11:46:58] 2025-11-25 15:52:44,793 | INFO     | chi2: 5.062805121605532
[2025-11-25 11:46:58] 2025-11-25 15:52:44,793 | INFO     | current chi2=5.062805121605532 (change=35.11889986641329 %)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,794 | INFO     | sum of square deviations: 76425377984.74683
[2025-11-25 11:46:58] 2025-11-25 15:52:44,806 | INFO     | sum of deviations: 1458197136015.9976
[2025-11-25 11:46:58] 2025-11-25 15:52:44,806 | INFO     | mean x: 1764066201.8660288
[2025-11-25 11:46:58] 2025-11-25 15:52:44,806 | INFO     | mean y: 3444886.0
[2025-11-25 11:46:58] 2025-11-25 15:52:44,806 | INFO     | intersect: -33654959575.10792
[2025-11-25 11:46:58] 2025-11-25 15:52:44,807 | INFO     | chi2: 3.8747228022596634
[2025-11-25 11:46:58] 2025-11-25 15:52:44,807 | INFO     | current chi2=3.8747228022596634 (change=23.466878357132977 %)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,807 | INFO     | right removable region: 626
[2025-11-25 11:46:58] 2025-11-25 15:52:44,808 | INFO     | sum of square deviations: 78267467592.01878
[2025-11-25 11:46:58] 2025-11-25 15:52:44,816 | INFO     | sum of deviations: 824289159677.665
[2025-11-25 11:46:58] 2025-11-25 15:52:44,816 | INFO     | mean x: 1764066659.351266
[2025-11-25 11:46:58] 2025-11-25 15:52:44,816 | INFO     | mean y: 3435335.2943037977
[2025-11-25 11:46:58] 2025-11-25 15:52:44,816 | INFO     | intersect: -18575178091.062683
[2025-11-25 11:46:58] 2025-11-25 15:52:44,817 | INFO     | chi2: 4.772037984558408
[2025-11-25 11:46:58] 2025-11-25 15:52:44,818 | INFO     | current chi2=4.772037984558408 (change=38.84515266129237 %)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,819 | INFO     | sum of square deviations: 76424335745.90746
[2025-11-25 11:46:58] 2025-11-25 15:52:44,834 | INFO     | sum of deviations: 721627724564.4863
[2025-11-25 11:46:58] 2025-11-25 15:52:44,834 | INFO     | mean x: 1764066811.8500798
[2025-11-25 11:46:58] 2025-11-25 15:52:44,834 | INFO     | mean y: 3443817.2711323765
[2025-11-25 11:46:58] 2025-11-25 15:52:44,835 | INFO     | intersect: -16653547793.981052
[2025-11-25 11:46:58] 2025-11-25 15:52:44,836 | INFO     | chi2: 4.340594418060746
[2025-11-25 11:46:58] 2025-11-25 15:52:44,836 | INFO     | current chi2=4.340594418060746 (change=9.041075697505928 %)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,836 | INFO     | left removable region: 20
[2025-11-25 11:46:58] 2025-11-25 15:52:44,837 | INFO     | sum of square deviations: 69000054116.1321
[2025-11-25 11:46:58] 2025-11-25 15:52:44,845 | INFO     | sum of deviations: 986996933642.6566
[2025-11-25 11:46:58] 2025-11-25 15:52:44,845 | INFO     | mean x: 1764066781.3630364
[2025-11-25 11:46:58] 2025-11-25 15:52:44,845 | INFO     | mean y: 3487083.5561056104
[2025-11-25 11:46:58] 2025-11-25 15:52:44,846 | INFO     | intersect: -25230239559.84249
[2025-11-25 11:46:58] 2025-11-25 15:52:44,846 | INFO     | chi2: 0.1749579453855898
[2025-11-25 11:46:58] 2025-11-25 15:52:44,846 | INFO     | current memory leak: 14.30 B/s (using 606 data points, chi2=0.17)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,847 | INFO     | could have reported an average CPU frequency of 2831 MHz (25 samples)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | ..............................
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . Timing measurements:
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . get job = 0 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . initial setup = 3 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . payload setup = 35 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . stage-in = 0 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . payload execution = 38872 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . stage-out = 3 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | . log creation = 0 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,851 | INFO     | ..............................
[2025-11-25 11:46:58] 2025-11-25 15:52:44,936 | INFO     | 
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | job summary report
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | --------------------------------------------------
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | PanDA job id: 6895361821
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | task id: 47556137
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | errors: (none)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | pilot state: finished 
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | transexitcode: 0
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | exeerrorcode: 0
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | exeerrordiag: 
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | exitcode: 0
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | exitmsg: OK
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | cpuconsumptiontime: 242713 s
[2025-11-25 11:46:58] 2025-11-25 15:52:44,937 | INFO     | nevents: 1000
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | neventsw: 0
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | pid: 40318
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | pgrp: 40318
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | corecount: 12
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | event service: False
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | sizes: {0: 2284083, 1: 2284338, 2: 2284338, 13: 2284366, 23: 2284422, 28: 2284712, 34: 2284868, 38911: 2328451, 38912: 2328450, 38917: 2337505, 38918: 2337561, 389
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | --------------------------------------------------
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | 
[2025-11-25 11:46:58] 2025-11-25 15:52:44,938 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 11:46:58] 2025-11-25 15:52:44,962 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:46:58] 2025-11-25 15:52:44,964 | INFO     | job 6895361821 has completed (purged errors)
[2025-11-25 11:46:58] 2025-11-25 15:52:44,965 | INFO     | overall cleanup function is called
[2025-11-25 11:46:58] 2025-11-25 15:52:45,983 | INFO     | --- collectZombieJob: --- 10, [40318]
[2025-11-25 11:46:58] 2025-11-25 15:52:45,984 | INFO     | zombie collector waiting for pid 40318
[2025-11-25 11:46:58] 2025-11-25 15:52:45,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:46:58] 2025-11-25 15:52:45,984 | INFO     | collected zombie processes
[2025-11-25 11:46:58] 2025-11-25 15:52:45,984 | INFO     | will attempt to kill all subprocesses of pid=40318
[2025-11-25 11:46:58] 2025-11-25 15:52:46,384 | INFO     | process IDs to be killed: [40318] (in reverse order)
[2025-11-25 11:46:58] 2025-11-25 15:52:46,524 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:46:58] 2025-11-25 15:52:46,524 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:46:58] 2025-11-25 15:52:46,536 | INFO     | did not find any defunct processes belonging to 40318
[2025-11-25 11:46:58] 2025-11-25 15:52:46,548 | INFO     | did not find any defunct processes belonging to 40318
[2025-11-25 11:46:58] 2025-11-25 15:52:46,549 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:46:58] 2025-11-25 15:52:46,549 | INFO     | ready for new job
[2025-11-25 11:46:58] 2025-11-25 15:52:46,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:46:58] 2025-11-25 15:52:46,553 | INFO     | ***************************************
[2025-11-25 11:46:58] 2025-11-25 15:52:46,553 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:46:58] 2025-11-25 15:52:46,553 | INFO     | ***************************************
[2025-11-25 11:46:58] 2025-11-25 15:52:46,553 | INFO     | 
[2025-11-25 11:46:58] 2025-11-25 15:52:46,556 | INFO     | architecture information:
[2025-11-25 11:46:58] 2025-11-25 15:52:46,557 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:46:58] 2025-11-25 15:52:46,576 | INFO     | cat /etc/os-release:
[2025-11-25 11:46:58] NAME="CentOS Linux"
[2025-11-25 11:46:58] VERSION="7 (Core)"
[2025-11-25 11:46:58] ID="centos"
[2025-11-25 11:46:58] ID_LIKE="rhel fedora"
[2025-11-25 11:46:58] VERSION_ID="7"
[2025-11-25 11:46:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:46:58] ANSI_COLOR="0;31"
[2025-11-25 11:46:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:46:58] HOME_URL="https://www.centos.org/"
[2025-11-25 11:46:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:46:58] 
[2025-11-25 11:46:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:46:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:46:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:46:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:46:58] 
[2025-11-25 11:46:58] 2025-11-25 15:52:46,577 | INFO     | ***************************************
[2025-11-25 11:46:58] 2025-11-25 15:52:47,081 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 11:46:58] 2025-11-25 15:52:47,202 | INFO     | sufficient remaining disk space (71604109312 B)
[2025-11-25 11:46:58] 2025-11-25 15:52:47,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:46:58] 2025-11-25 15:52:47,203 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:46:58] 2025-11-25 15:52:47,203 | INFO     | update_server=False
[2025-11-25 11:46:58] 2025-11-25 15:52:47,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:46:58] 2025-11-25 15:52:47,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:46:58] 2025-11-25 15:52:47,741 | INFO     | all payload control threads have been joined
[2025-11-25 11:46:58] 2025-11-25 15:52:47,769 | INFO     | all job control threads have been joined
[2025-11-25 11:46:58] 2025-11-25 15:52:47,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:46:58] 2025-11-25 15:52:48,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:46:58] 2025-11-25 15:52:48,169 | INFO     | aborting loop
[2025-11-25 11:46:58] 2025-11-25 15:52:48,171 | INFO     | all data control threads have been joined
[2025-11-25 11:46:58] 2025-11-25 15:52:48,211 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:48,380 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:48,427 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:48,748 | INFO     | [payload] control thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:48,775 | INFO     | [job] control thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,174 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,178 | INFO     | [data] control thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,310 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,324 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,325 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,673 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,687 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,692 | INFO     | [job] validate thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,938 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:49,955 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:46:58] 2025-11-25 15:52:50,961 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:52:51,213 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:46:58] 2025-11-25 15:53:03,756 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:46:58] 2025-11-25 15:53:05,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449567786816)>', '<ExcThread(monitor, started 140449213818624)>']
[2025-11-25 11:46:58] 2025-11-25 15:53:10,248 | INFO     | all workflow threads have been joined
[2025-11-25 11:46:58] 2025-11-25 15:53:10,248 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:46:58] 2025-11-25 15:53:10,248 | INFO     | traces error code: 0
[2025-11-25 11:46:58] 2025-11-25 15:53:10,248 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:46:58] 2025-11-25 15:53:17,230 | INFO     | PID=31577 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 11:46:58] 2025-11-25 15:53:17,231 | INFO     | .. there are 25 such processes running
[2025-11-25 11:46:58] 2025-11-25 15:53:17,231 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:46:58] 2025-11-25 15:53:17,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:46:58] 2025-11-25 15:53:17,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:46:58] 2025-11-25 15:53:17,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:46:58] 2025-11-25 15:53:17,232 | INFO     | [monitor] control thread has ended
[2025-11-25 11:46:58] 2025-11-25 15:53:17,403 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:46:58] 2025-11-25 15:53:17,407 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:46:58] 2025-11-25 15:53:17,417 [wrapper] pilotpid: 31577
[2025-11-25 11:46:58] 2025-11-25 15:53:17,421 [wrapper] Pilot exit status: 0
[2025-11-25 11:46:58] 2025-11-25 15:53:17,450 [wrapper] pandaids: 6895361821
[2025-11-25 11:46:58] 2025-11-25 15:53:17,522 [wrapper] cleanup supervisor_pilot 1655046 31578
[2025-11-25 11:46:58] 2025-11-25 15:53:17,528 [wrapper] Test setup, not cleaning
[2025-11-25 11:46:58] 2025-11-25 15:53:17,532 [wrapper] apfmon messages muted
[2025-11-25 11:46:58] 2025-11-25 15:53:17,537 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:46:58] 2025-11-25 15:53:17,540 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:46:58]  *** Error codes and diagnostics ***
[2025-11-25 11:46:58]     "exeErrorCode": 0,
[2025-11-25 11:46:58]     "exeErrorDiag": "",
[2025-11-25 11:46:58]     "pilotErrorCode": 0,
[2025-11-25 11:46:58]     "pilotErrorDiag": "",
[2025-11-25 11:46:58]  *** Listing of results directory ***
[2025-11-25 11:46:58] total 1304712
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:16 pilot3.tar.gz
[2025-11-25 11:46:58] -rwx------. 1 boincer umatlas     36292 Nov 23 09:31 runpilot2-wrapper.sh
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 09:31 queuedata.json
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:46:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-25 11:46:58] -rw-r--r--. 2 boincer umatlas 406682925 Nov 25 00:01 EVNT.47483658._000764.pool.root.1
[2025-11-25 11:46:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 11:46:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-25 11:46:58] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:01 input.tar.gz
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:02 pandaJob.out
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-25 11:46:58] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas       533 Nov 25 10:39 boinc_task_state.xml
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas 910370083 Nov 25 10:51 HITS.47556137._007595.pool.root.1
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas      1055 Nov 25 10:52 memory_monitor_summary.json
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas   1516240 Nov 25 10:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas   2322310 Nov 25 10:52 log.47556137._007595.job.log.tgz.1
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas      8627 Nov 25 10:52 heartbeat.json
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas        95 Nov 25 10:53 pilot_heartbeat.json
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas       821 Nov 25 10:53 pilotlog.txt
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas   5204174 Nov 25 10:53 log.47556137._007595.job.log.1
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas       353 Nov 25 10:53 output.list
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas       620 Nov 25 10:53 runtime_log
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas   7546880 Nov 25 10:53 result.tar.gz
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas      9350 Nov 25 10:53 runtime_log.err
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas       661 Nov 25 10:53 5TELDm5IQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkZIKDmcapDVn.diag
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas      6843 Nov 25 11:46 init_data.xml
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 11:46 boinc_mmap_file
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas        29 Nov 25 11:46 wrapper_checkpoint.txt
[2025-11-25 11:46:58] -rw-r--r--. 1 boincer umatlas     21353 Nov 25 11:46 stderr.txt
[2025-11-25 11:46:58] HITS file was successfully produced:
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas 910370083 Nov 25 10:51 shared/HITS.pool.root.1
[2025-11-25 11:46:58]  *** Contents of shared directory: ***
[2025-11-25 11:46:58] total 1294164
[2025-11-25 11:46:58] -rw-r--r--. 2 boincer umatlas 406682925 Nov 25 00:01 ATLAS.root_0
[2025-11-25 11:46:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 11:46:58] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:01 input.tar.gz
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas 910370083 Nov 25 10:51 HITS.pool.root.1
[2025-11-25 11:46:58] -rw-------. 1 boincer umatlas   7546880 Nov 25 10:53 result.tar.gz
11:47:00 (25979): run_atlas exited; CPU time 243156.412863
11:47:00 (25979): called boinc_finish(0)

</stderr_txt>
]]>

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