Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:57:23 (82038): wrapper (7.7.26015): starting
13:57:23 (82038): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 13:57:23] Arguments: --nthreads 8
[2025-11-24 13:57:23] Threads: 8
[2025-11-24 13:57:23] Checking for CVMFS
[2025-11-24 13:57:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:57:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:57:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:57:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:57:24] 2.11.3.0 1215219 26073 197972 153259 0 540 37013315 45568000 11647 130560 0 154411947 99.777 111211533 22040 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-24 13:57:24] CVMFS is ok
[2025-11-24 13:57:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:57:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:57:24] Further information can be found at the LHC@home message board.
[2025-11-24 13:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:57:24] Checking for apptainer binary...
[2025-11-24 13:57:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:57:24] Running /usr/bin/apptainer --version
[2025-11-24 13:57:24] apptainer version 1.4.1-1.el9
[2025-11-24 13:57:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:57:24] wns0018.triumf.lcg
[2025-11-24 13:57:24] apptainer works
[2025-11-24 13:57:24] Set ATHENA_PROC_NUMBER=8
[2025-11-24 13:57:24] Set ATHENA_CORE_NUMBER=8
[2025-11-24 13:57:24] Starting ATLAS job with PandaID=6895559637
[2025-11-24 13:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:01:38]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:01:38] 2025-11-24 22:00:55,555 | INFO     | could have reported an average CPU frequency of 2096 MHz (4 samples)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | ..............................
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . Timing measurements:
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . get job = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . initial setup = 2 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . payload setup = 5 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . stage-in = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . payload execution = 57 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . stage-out = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . log creation = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | ..............................
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 14:01:38] 2025-11-24 22:00:55,557 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895559637/pilotlog.txt
[2025-11-24 14:01:38] 2025-11-24 22:00:55,568 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 14:01:38] - Log from pilotlog.txt -
[2025-11-24 14:01:38] 2025-11-24 22:00:55,553 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895559637/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | INFO     | extracted standard info from prmon json
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 14:01:38] 2025-11-24 22:00:55,555 | WARNING  | wrong length of table data, x=[1764021477.0], y=[956.0] (must be same and length>=4)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,555 | INFO     | could have reported an average CPU frequency of 2096 MHz (4 samples)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | ..............................
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . Timing measurements:
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . get job = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . initial setup = 2 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . payload setup = 5 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . stage-in = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . payload execution = 57 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . stage-out = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . log creation = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | ..............................
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 14:01:38] 2025-11-24 22:00:55,557 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895559637/pilotlog.txt
[2025-11-24 14:01:38] 2025-11-24 22:00:55,568 | WARNING  | 
[2025-11-24 14:01:38] [begin log extracts]
[2025-11-24 14:01:38] - Log from pilotlog.txt -
[2025-11-24 14:01:38] 2025-11-24 22:00:55,553 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895559637/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | INFO     | extracted standard info from prmon json
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 14:01:38] 2025-11-24 22:00:55,554 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 14:01:38] 2025-11-24 22:00:55,555 | WARNING  | wrong length of table data, x=[1764021477.0], y=[956.0] (must be same and length>=4)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,555 | INFO     | could have reported an average CPU frequency of 2096 MHz (4 samples)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | ..............................
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . Timing measurements:
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . get job = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . initial setup = 2 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . payload setup = 5 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . stage-in = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . payload execution = 57 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . stage-out = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | . log creation = 0 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | ..............................
[2025-11-24 14:01:38] 2025-11-24 22:00:55,556 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 14:01:38] 2025-11-24 22:00:55,557 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895559637/pilotlog.txt
[2025-11-24 14:01:38] [end log extracts]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,568 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,569 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 14:01:38] 2025-11-24 22:00:55,642 | INFO     | 
[2025-11-24 14:01:38] 2025-11-24 22:00:55,642 | INFO     | job summary report
[2025-11-24 14:01:38] 2025-11-24 22:00:55,642 | INFO     | --------------------------------------------------
[2025-11-24 14:01:38] 2025-11-24 22:00:55,642 | INFO     | PanDA job id: 6895559637
[2025-11-24 14:01:38] 2025-11-24 22:00:55,642 | INFO     | task id: 47556161
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 13:58:46,800 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | pilot state: failed 
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | transexitcode: 65
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | exeerrorcode: 65
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | exitcode: 65
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | cpuconsumptiontime: 48 s
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | nevents: 0
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | neventsw: 0
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | pid: 92219
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | pgrp: 92219
[2025-11-24 14:01:38] 2025-11-24 22:00:55,643 | INFO     | corecount: 8
[2025-11-24 14:01:38] 2025-11-24 22:00:55,644 | INFO     | event service: False
[2025-11-24 14:01:38] 2025-11-24 22:00:55,644 | INFO     | sizes: {0: 2284133, 1: 2284332, 4: 2284594, 11: 2284622, 65: 2310143, 66: 2314565, 68: 2314565, 187: 2314731}
[2025-11-24 14:01:38] 2025-11-24 22:00:55,644 | INFO     | --------------------------------------------------
[2025-11-24 14:01:38] 2025-11-24 22:00:55,644 | INFO     | 
[2025-11-24 14:01:38] 2025-11-24 22:00:55,644 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,660 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,662 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:01:38] 2025-11-24 22:00:55,662 | INFO     | job 6895559637 has completed (purged errors)
[2025-11-24 14:01:38] 2025-11-24 22:00:55,662 | INFO     | overall cleanup function is called
[2025-11-24 14:01:38] 2025-11-24 22:00:56,668 | INFO     | --- collectZombieJob: --- 10, [92219]
[2025-11-24 14:01:38] 2025-11-24 22:00:56,668 | INFO     | zombie collector waiting for pid 92219
[2025-11-24 14:01:38] 2025-11-24 22:00:56,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:01:38] 2025-11-24 22:00:56,669 | INFO     | collected zombie processes
[2025-11-24 14:01:38] 2025-11-24 22:00:56,669 | INFO     | will attempt to kill all subprocesses of pid=92219
[2025-11-24 14:01:38] 2025-11-24 22:00:56,842 | INFO     | process IDs to be killed: [92219] (in reverse order)
[2025-11-24 14:01:38] 2025-11-24 22:00:56,897 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:01:38] 2025-11-24 22:00:56,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:01:38] 2025-11-24 22:00:56,903 | INFO     | did not find any defunct processes belonging to 92219
[2025-11-24 14:01:38] 2025-11-24 22:00:56,909 | INFO     | did not find any defunct processes belonging to 92219
[2025-11-24 14:01:38] 2025-11-24 22:00:56,910 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:01:38] 2025-11-24 22:00:56,911 | INFO     | ready for new job
[2025-11-24 14:01:38] 2025-11-24 22:00:56,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:01:38] 2025-11-24 22:00:56,912 | INFO     | ***************************************
[2025-11-24 14:01:38] 2025-11-24 22:00:56,912 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:01:38] 2025-11-24 22:00:56,912 | INFO     | ***************************************
[2025-11-24 14:01:38] 2025-11-24 22:00:56,913 | INFO     | 
[2025-11-24 14:01:38] 2025-11-24 22:00:56,914 | INFO     | architecture information:
[2025-11-24 14:01:38] 2025-11-24 22:00:56,914 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:01:38] 2025-11-24 22:00:56,925 | INFO     | cat /etc/os-release:
[2025-11-24 14:01:38] NAME="CentOS Linux"
[2025-11-24 14:01:38] VERSION="7 (Core)"
[2025-11-24 14:01:38] ID="centos"
[2025-11-24 14:01:38] ID_LIKE="rhel fedora"
[2025-11-24 14:01:38] VERSION_ID="7"
[2025-11-24 14:01:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:01:38] ANSI_COLOR="0;31"
[2025-11-24 14:01:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:01:38] HOME_URL="https://www.centos.org/"
[2025-11-24 14:01:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:01:38] 
[2025-11-24 14:01:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:01:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:01:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:01:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:01:38] 
[2025-11-24 14:01:38] 2025-11-24 22:00:56,925 | INFO     | ***************************************
[2025-11-24 14:01:38] 2025-11-24 22:00:57,428 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 14:01:38] 2025-11-24 22:00:57,442 | INFO     | sufficient remaining disk space (1119915868160 B)
[2025-11-24 14:01:38] 2025-11-24 22:00:57,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:01:38] 2025-11-24 22:00:57,442 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:01:38] 2025-11-24 22:00:57,443 | INFO     | update_server=False
[2025-11-24 14:01:38] 2025-11-24 22:00:57,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:01:38] 2025-11-24 22:00:57,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:01:38] 2025-11-24 22:00:57,487 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 14:01:38] 2025-11-24 22:00:57,488 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 14:01:38] 2025-11-24 22:00:57,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:01:38] 2025-11-24 22:00:57,488 | INFO     | will abort loop
[2025-11-24 14:01:38] 2025-11-24 22:00:57,726 | INFO     | all payload control threads have been joined
[2025-11-24 14:01:38] 2025-11-24 22:00:57,825 | INFO     | all job control threads have been joined
[2025-11-24 14:01:38] 2025-11-24 22:00:57,833 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:01:38] 2025-11-24 22:00:58,358 | INFO     | all data control threads have been joined
[2025-11-24 14:01:38] 2025-11-24 22:00:58,447 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:58,448 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:58,493 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:58,731 | INFO     | [payload] control thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:58,830 | INFO     | [job] control thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:58,886 | INFO     | [job] validate thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,061 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,071 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,213 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,364 | INFO     | [data] control thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,402 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:01:38] 2025-11-24 22:00:59,815 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,839 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,868 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:00:59,918 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:01:03,553 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:01:38] 2025-11-24 22:01:27,739 | INFO     | PID=85685 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 14:01:38] 2025-11-24 22:01:27,740 | INFO     | .. there are 19 such processes running
[2025-11-24 14:01:38] 2025-11-24 22:01:27,740 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:01:38] 2025-11-24 22:01:27,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:01:38] 2025-11-24 22:01:27,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:01:38] 2025-11-24 22:01:33,192 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:01:38] 2025-11-24 22:01:33,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140267859863360)>', '<ExcThread(monitor, started 140267172648704)>']
[2025-11-24 14:01:38] 2025-11-24 22:01:33,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:01:38] 2025-11-24 22:01:33,771 | INFO     | [monitor] control thread has ended
[2025-11-24 14:01:38] 2025-11-24 22:01:38,266 | INFO     | all workflow threads have been joined
[2025-11-24 14:01:38] 2025-11-24 22:01:38,267 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:01:38] 2025-11-24 22:01:38,267 | INFO     | traces error code: 0
[2025-11-24 14:01:38] 2025-11-24 22:01:38,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:01:38] 2025-11-24 22:01:38,384 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:01:38] 2025-11-24 22:01:38,386 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:01:38] 2025-11-24 22:01:38,387 [wrapper] pilotpid: 85685
[2025-11-24 14:01:38] 2025-11-24 22:01:38,389 [wrapper] Pilot exit status: 0
[2025-11-24 14:01:38] 2025-11-24 22:01:38,396 [wrapper] pandaids: 6895559637
[2025-11-24 14:01:38] 2025-11-24 22:01:38,429 [wrapper] cleanup supervisor_pilot   85691 85686
[2025-11-24 14:01:38] 2025-11-24 22:01:38,431 [wrapper] Test setup, not cleaning
[2025-11-24 14:01:38] 2025-11-24 22:01:38,434 [wrapper] apfmon messages muted
[2025-11-24 14:01:38] 2025-11-24 22:01:38,435 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:01:38] 2025-11-24 22:01:38,437 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:01:38]  *** Error codes and diagnostics ***
[2025-11-24 14:01:38]     "exeErrorCode": 65,
[2025-11-24 14:01:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 14:01:38]     "pilotErrorCode": 1305,
[2025-11-24 14:01:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 14:01:38]  *** Listing of results directory ***
[2025-11-24 14:01:38] total 403336
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc    576529 Nov 24 02:13 pilot3.tar.gz
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc      5112 Nov 24 02:42 queuedata.json
[2025-11-24 14:01:38] -rwx------. 1 boinc boinc     36292 Nov 24 02:46 runpilot2-wrapper.sh
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc       100 Nov 24 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:01:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 13:57 run_atlas
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc       105 Nov 24 13:57 job.xml
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc      6445 Nov 24 13:57 init_data.xml
[2025-11-24 14:01:38] -rw-r--r--. 2 boinc boinc 408819109 Nov 24 13:57 EVNT.47483658._002035.pool.root.1
[2025-11-24 14:01:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 13:57 start_atlas.sh
[2025-11-24 14:01:38] drwxrwx--x. 2 boinc boinc      4096 Nov 24 13:57 shared
[2025-11-24 14:01:38] -rw-r--r--. 2 boinc boinc    590104 Nov 24 13:57 input.tar.gz
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc         0 Nov 24 13:57 boinc_lockfile
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc      2784 Nov 24 13:57 pandaJob.out
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc    991801 Nov 24 13:57 agis_schedconf.cvmfs.json
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc   1516227 Nov 24 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:01:38] drwx------. 5 boinc boinc      4096 Nov 24 13:57 pilot3
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc       523 Nov 24 13:58 boinc_task_state.xml
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc       952 Nov 24 13:58 memory_monitor_summary.json
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc     47724 Nov 24 13:58 log.47556161._000185.job.log.tgz.1
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc        95 Nov 24 14:00 pilot_heartbeat.json
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc     10315 Nov 24 14:00 heartbeat.json
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc      5007 Nov 24 14:01 pilotlog.txt
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc      8192 Nov 24 14:01 boinc_mmap_file
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc        23 Nov 24 14:01 wrapper_checkpoint.txt
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc     94006 Nov 24 14:01 log.47556161._000185.job.log.1
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc       186 Nov 24 14:01 output.list
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc       620 Nov 24 14:01 runtime_log
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc    163840 Nov 24 14:01 result.tar.gz
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc      8634 Nov 24 14:01 runtime_log.err
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc       645 Nov 24 14:01 nfINDm6Gjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIcLKDmHUXUDo.diag
[2025-11-24 14:01:38] -rw-r--r--. 1 boinc boinc     22358 Nov 24 14:01 stderr.txt
[2025-11-24 14:01:38] No HITS result produced
[2025-11-24 14:01:38]  *** Contents of shared directory: ***
[2025-11-24 14:01:38] total 400000
[2025-11-24 14:01:38] -rw-r--r--. 2 boinc boinc 408819109 Nov 24 13:57 ATLAS.root_0
[2025-11-24 14:01:38] -rw-r--r--. 2 boinc boinc     15847 Nov 24 13:57 start_atlas.sh
[2025-11-24 14:01:38] -rw-r--r--. 2 boinc boinc    590104 Nov 24 13:57 input.tar.gz
[2025-11-24 14:01:38] -rw-------. 1 boinc boinc    163840 Nov 24 14:01 result.tar.gz
14:01:40 (82038): run_atlas exited; CPU time 47.741254
14:01:40 (82038): called boinc_finish(0)

</stderr_txt>
]]>

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