Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:34:09 (1690495): wrapper (7.7.26015): starting
13:34:09 (1690495): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 13:34:09] Arguments: --nthreads 12
[2025-11-25 13:34:09] Threads: 12
[2025-11-25 13:34:09] Checking for CVMFS
[2025-11-25 13:34:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:34:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:34:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:34:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:34:10] 2.13.3.0 51945 25690 501256 153281 0 90 45458741 46080001 7221 130560 0 184783620 99.926 43931760 23892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-25 13:34:10] CVMFS is ok
[2025-11-25 13:34:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:34:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:34:10] Further information can be found at the LHC@home message board.
[2025-11-25 13:34:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:34:10] Checking for apptainer binary...
[2025-11-25 13:34:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:34:10] Running /usr/bin/apptainer --version
[2025-11-25 13:34:10] apptainer version 1.4.3-1.el9
[2025-11-25 13:34:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:34:10] mff2101.farm.particle.cz
[2025-11-25 13:34:10] apptainer works
[2025-11-25 13:34:10] Set ATHENA_PROC_NUMBER=12
[2025-11-25 13:34:10] Set ATHENA_CORE_NUMBER=12
[2025-11-25 13:34:10] Starting ATLAS job with PandaID=6894254020
[2025-11-25 13:34:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:57:22 (78675): wrapper (7.7.26015): starting
16:57:22 (78675): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 16:57:22] Arguments: --nthreads 12
[2025-11-25 16:57:22] Threads: 12
[2025-11-25 16:57:22] This job has been restarted, cleaning up previous attempt
[2025-11-25 16:57:22] Checking for CVMFS
[2025-11-25 16:57:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:57:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:57:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:57:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:57:22] 2.13.3.0 4244 3 29248 153287 0 28 45632854 46080000 761 130560 0 19368 99.979 7 225 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-25 16:57:22] CVMFS is ok
[2025-11-25 16:57:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:57:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:57:22] Further information can be found at the LHC@home message board.
[2025-11-25 16:57:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:57:22] Checking for apptainer binary...
[2025-11-25 16:57:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:57:22] Running /usr/bin/apptainer --version
[2025-11-25 16:57:22] apptainer version 1.4.3-1.el9
[2025-11-25 16:57:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:57:22] mff2101.farm.particle.cz
[2025-11-25 16:57:22] apptainer works
[2025-11-25 16:57:22] Set ATHENA_PROC_NUMBER=12
[2025-11-25 16:57:22] Set ATHENA_CORE_NUMBER=12
[2025-11-25 16:57:22] Starting ATLAS job with PandaID=6894254020
[2025-11-25 16:57:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:29:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:29:11] 2025-11-26 02:50:51,769 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:29:11] 2025-11-26 02:50:51,770 | INFO     | sum of square deviations: 82052673441.25212
[2025-11-26 04:29:11] 2025-11-26 02:50:51,786 | INFO     | sum of deviations: 671606033407.3058
[2025-11-26 04:29:11] 2025-11-26 02:50:51,786 | INFO     | mean x: 1764105830.9345794
[2025-11-26 04:29:11] 2025-11-26 02:50:51,787 | INFO     | mean y: 3450941.031152648
[2025-11-26 04:29:11] 2025-11-26 02:50:51,787 | INFO     | intersect: -14435860661.325727
[2025-11-26 04:29:11] 2025-11-26 02:50:51,787 | INFO     | chi2: 14.825491129451331
[2025-11-26 04:29:11] 2025-11-26 02:50:51,788 | INFO     | sum of square deviations: 80150769833.38156
[2025-11-26 04:29:11] 2025-11-26 02:50:51,804 | INFO     | sum of deviations: 961135177676.3749
[2025-11-26 04:29:11] 2025-11-26 02:50:51,804 | INFO     | mean x: 1764105678.44584
[2025-11-26 04:29:11] 2025-11-26 02:50:51,804 | INFO     | mean y: 3474154.3296703296
[2025-11-26 04:29:11] 2025-11-26 02:50:51,805 | INFO     | intersect: -21150958026.642048
[2025-11-26 04:29:11] 2025-11-26 02:50:51,805 | INFO     | chi2: 10.530771235280445
[2025-11-26 04:29:11] 2025-11-26 02:50:51,805 | INFO     | current chi2=10.530771235280445 (change=28.968483112436537 %)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,806 | INFO     | sum of square deviations: 78278494687.8465
[2025-11-26 04:29:11] 2025-11-26 02:50:51,814 | INFO     | sum of deviations: 1254824121241.433
[2025-11-26 04:29:11] 2025-11-26 02:50:51,814 | INFO     | mean x: 1764105525.9572785
[2025-11-26 04:29:11] 2025-11-26 02:50:51,814 | INFO     | mean y: 3498071.275316456
[2025-11-26 04:29:11] 2025-11-26 02:50:51,815 | INFO     | intersect: -28275560886.28264
[2025-11-26 04:29:11] 2025-11-26 02:50:51,815 | INFO     | chi2: 6.332621485605815
[2025-11-26 04:29:11] 2025-11-26 02:50:51,816 | INFO     | current chi2=6.332621485605815 (change=39.86554883663114 %)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,816 | INFO     | sum of square deviations: 76435615442.14348
[2025-11-26 04:29:11] 2025-11-26 02:50:51,825 | INFO     | sum of deviations: 1533526147155.1357
[2025-11-26 04:29:11] 2025-11-26 02:50:51,825 | INFO     | mean x: 1764105373.4688995
[2025-11-26 04:29:11] 2025-11-26 02:50:51,825 | INFO     | mean y: 3521117.570972887
[2025-11-26 04:29:11] 2025-11-26 02:50:51,825 | INFO     | intersect: -35389687936.90653
[2025-11-26 04:29:11] 2025-11-26 02:50:51,826 | INFO     | chi2: 2.5433549648614933
[2025-11-26 04:29:11] 2025-11-26 02:50:51,826 | INFO     | current chi2=2.5433549648614933 (change=59.83724953966389 %)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,827 | INFO     | sum of square deviations: 74621785164.63821
[2025-11-26 04:29:11] 2025-11-26 02:50:51,835 | INFO     | sum of deviations: 1580745740377.5051
[2025-11-26 04:29:11] 2025-11-26 02:50:51,835 | INFO     | mean x: 1764105220.9758842
[2025-11-26 04:29:11] 2025-11-26 02:50:51,835 | INFO     | mean y: 3525065.900321543
[2025-11-26 04:29:11] 2025-11-26 02:50:51,835 | INFO     | intersect: -37366283328.29513
[2025-11-26 04:29:11] 2025-11-26 02:50:51,836 | INFO     | chi2: 2.171772510258195
[2025-11-26 04:29:11] 2025-11-26 02:50:51,836 | INFO     | current chi2=2.171772510258195 (change=14.609932932563897 %)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,836 | INFO     | right removable region: 621
[2025-11-26 04:29:11] 2025-11-26 02:50:51,836 | INFO     | sum of square deviations: 80150246943.2712
[2025-11-26 04:29:11] 2025-11-26 02:50:51,842 | INFO     | sum of deviations: 472867952669.58716
[2025-11-26 04:29:11] 2025-11-26 02:50:51,842 | INFO     | mean x: 1764105983.4442701
[2025-11-26 04:29:11] 2025-11-26 02:50:51,842 | INFO     | mean y: 3466838.284144427
[2025-11-26 04:29:11] 2025-11-26 02:50:51,842 | INFO     | intersect: -10404351184.708145
[2025-11-26 04:29:11] 2025-11-26 02:50:51,843 | INFO     | chi2: 12.874453977452859
[2025-11-26 04:29:11] 2025-11-26 02:50:51,843 | INFO     | current chi2=12.874453977452859 (change=13.160016993451718 %)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,843 | INFO     | left removable region: 10
[2025-11-26 04:29:11] 2025-11-26 02:50:51,843 | INFO     | sum of square deviations: 70732148244.68053
[2025-11-26 04:29:11] 2025-11-26 02:50:51,849 | INFO     | sum of deviations: 1312108604311.5105
[2025-11-26 04:29:11] 2025-11-26 02:50:51,849 | INFO     | mean x: 1764105495.4893618
[2025-11-26 04:29:11] 2025-11-26 02:50:51,849 | INFO     | mean y: 3547012.309328969
[2025-11-26 04:29:11] 2025-11-26 02:50:51,849 | INFO     | intersect: -32721289670.68921
[2025-11-26 04:29:11] 2025-11-26 02:50:51,850 | INFO     | chi2: 0.04229582178344904
[2025-11-26 04:29:11] 2025-11-26 02:50:51,850 | INFO     | current memory leak: 18.55 B/s (using 611 data points, chi2=0.04)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | could have reported an average CPU frequency of 2794 MHz (25 samples)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | ..............................
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . Timing measurements:
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . get job = 0 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . initial setup = 0 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . payload setup = 6 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . stage-in = 5 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . payload execution = 39138 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . stage-out = 3 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | . log creation = 1 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,851 | INFO     | ..............................
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | 
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | job summary report
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | --------------------------------------------------
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | PanDA job id: 6894254020
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | task id: 47533967
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | errors: (none)
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | pilot state: finished 
[2025-11-26 04:29:11] 2025-11-26 02:50:51,959 | INFO     | transexitcode: 0
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | exeerrorcode: 0
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | exeerrordiag: 
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | exitcode: 0
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | exitmsg: OK
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | cpuconsumptiontime: 230178 s
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | nevents: 1000
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | neventsw: 0
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | pid: 177290
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | pgrp: 177290
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | corecount: 12
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | event service: False
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | sizes: {0: 2284144, 1: 2284343, 10: 2284605, 11: 2284633, 39148: 2329568, 39152: 2338564, 39153: 2338748, 39184: 2339058}
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | --------------------------------------------------
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | 
[2025-11-26 04:29:11] 2025-11-26 02:50:51,960 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-11-26 04:29:11] 2025-11-26 02:50:51,997 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,998 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,999 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,999 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,999 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,999 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,999 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:51,999 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:52,000 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:52,000 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:29:11] 2025-11-26 02:50:52,000 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:52,000 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:29:11] 2025-11-26 02:50:52,000 | INFO     | job 6894254020 has completed (purged errors)
[2025-11-26 04:29:11] 2025-11-26 02:50:52,000 | INFO     | overall cleanup function is called
[2025-11-26 04:29:11] 2025-11-26 02:50:53,033 | INFO     | --- collectZombieJob: --- 10, [177290]
[2025-11-26 04:29:11] 2025-11-26 02:50:53,050 | INFO     | zombie collector waiting for pid 177290
[2025-11-26 04:29:11] 2025-11-26 02:50:53,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:29:11] 2025-11-26 02:50:53,051 | INFO     | collected zombie processes
[2025-11-26 04:29:11] 2025-11-26 02:50:53,059 | INFO     | will attempt to kill all subprocesses of pid=177290
[2025-11-26 04:29:11] 2025-11-26 02:50:53,074 | INFO     | PID=114816 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 04:29:11] 2025-11-26 02:50:53,074 | INFO     | .. there are 20 such processes running
[2025-11-26 04:29:11] 2025-11-26 02:50:53,477 | INFO     | process IDs to be killed: [177290] (in reverse order)
[2025-11-26 04:29:11] 2025-11-26 02:50:53,845 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:29:11] 2025-11-26 02:50:53,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:29:11] 2025-11-26 02:50:53,864 | INFO     | did not find any defunct processes belonging to 177290
[2025-11-26 04:29:11] 2025-11-26 02:50:53,883 | INFO     | did not find any defunct processes belonging to 177290
[2025-11-26 04:29:11] 2025-11-26 02:50:53,884 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:29:11] 2025-11-26 02:50:53,885 | INFO     | ready for new job
[2025-11-26 04:29:11] 2025-11-26 02:50:53,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:29:11] 2025-11-26 02:50:53,889 | INFO     | ***************************************
[2025-11-26 04:29:11] 2025-11-26 02:50:53,890 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:29:11] 2025-11-26 02:50:53,890 | INFO     | ***************************************
[2025-11-26 04:29:11] 2025-11-26 02:50:53,890 | INFO     | 
[2025-11-26 04:29:11] 2025-11-26 02:50:53,897 | INFO     | architecture information:
[2025-11-26 04:29:11] 2025-11-26 02:50:53,909 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:29:11] 2025-11-26 02:50:53,989 | INFO     | cat /etc/os-release:
[2025-11-26 04:29:11] NAME="CentOS Linux"
[2025-11-26 04:29:11] VERSION="7 (Core)"
[2025-11-26 04:29:11] ID="centos"
[2025-11-26 04:29:11] ID_LIKE="rhel fedora"
[2025-11-26 04:29:11] VERSION_ID="7"
[2025-11-26 04:29:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:29:11] ANSI_COLOR="0;31"
[2025-11-26 04:29:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:29:11] HOME_URL="https://www.centos.org/"
[2025-11-26 04:29:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:29:11] 
[2025-11-26 04:29:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:29:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:29:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:29:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:29:11] 
[2025-11-26 04:29:11] 2025-11-26 02:50:53,989 | INFO     | ***************************************
[2025-11-26 04:29:11] 2025-11-26 02:50:54,493 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-11-26 04:29:11] 2025-11-26 02:50:54,603 | INFO     | sufficient remaining disk space (1382952206336 B)
[2025-11-26 04:29:11] 2025-11-26 02:50:54,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:29:11] 2025-11-26 02:50:54,604 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:29:11] 2025-11-26 02:50:54,604 | INFO     | update_server=False
[2025-11-26 04:29:11] 2025-11-26 02:50:54,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:29:11] 2025-11-26 02:50:54,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:29:11] 2025-11-26 02:50:54,737 | INFO     | all job control threads have been joined
[2025-11-26 04:29:11] 2025-11-26 02:50:54,742 | INFO     | all data control threads have been joined
[2025-11-26 04:29:11] 2025-11-26 02:50:54,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:29:11] 2025-11-26 02:50:54,879 | INFO     | aborting loop
[2025-11-26 04:29:11] 2025-11-26 02:50:55,136 | INFO     | all payload control threads have been joined
[2025-11-26 04:29:11] 2025-11-26 02:50:55,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:29:11] 2025-11-26 02:50:55,609 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:55,743 | INFO     | [job] control thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:55,748 | INFO     | [data] control thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:55,885 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:55,989 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,109 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,142 | INFO     | [payload] control thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,203 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,340 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,404 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,471 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,904 | INFO     | [job] validate thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:56,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:29:11] 2025-11-26 02:50:57,511 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:57,979 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:50:58,617 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:29:11] 2025-11-26 02:51:25,621 | INFO     | PID=114816 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 04:29:11] 2025-11-26 02:51:25,622 | INFO     | .. there are 20 such processes running
[2025-11-26 04:29:11] 2025-11-26 02:51:25,622 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:29:11] 2025-11-26 02:51:25,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:29:11] 2025-11-26 02:51:25,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:29:11] 2025-11-26 02:51:38,392 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:29:11] 2025-11-26 02:51:39,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140602524059456)>', '<ExcThread(monitor, started 140602012309248)>']
[2025-11-26 04:29:11] 2025-11-26 02:51:40,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:29:11] 2025-11-26 02:51:40,711 | INFO     | [monitor] control thread has ended
[2025-11-26 04:29:11] 2025-11-26 02:51:44,947 | INFO     | all workflow threads have been joined
[2025-11-26 04:29:11] 2025-11-26 02:51:44,947 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:29:11] 2025-11-26 02:51:44,948 | INFO     | traces error code: 0
[2025-11-26 04:29:11] 2025-11-26 02:51:44,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:29:11] 2025-11-26 02:51:45,131 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:29:11] 2025-11-26 02:51:45,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:29:11] 2025-11-26 02:51:45,205 [wrapper] pilotpid: 114816
[2025-11-26 04:29:11] 2025-11-26 02:51:45,211 [wrapper] Pilot exit status: 0
[2025-11-26 04:29:11] 2025-11-26 02:51:45,232 [wrapper] pandaids: 6894254020 6894254020
[2025-11-26 04:29:11] 2025-11-26 02:51:45,387 [wrapper] cleanup supervisor_pilot 1795354 114818
[2025-11-26 04:29:11] 2025-11-26 02:51:45,419 [wrapper] Test setup, not cleaning
[2025-11-26 04:29:11] 2025-11-26 02:51:45,435 [wrapper] apfmon messages muted
[2025-11-26 04:29:11] 2025-11-26 02:51:45,476 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:29:11] 2025-11-26 02:51:45,497 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:29:11]  *** Error codes and diagnostics ***
[2025-11-26 04:29:11]     "exeErrorCode": 0,
[2025-11-26 04:29:11]     "exeErrorDiag": "",
[2025-11-26 04:29:11]     "pilotErrorCode": 0,
[2025-11-26 04:29:11]     "pilotErrorDiag": "",
[2025-11-26 04:29:11]  *** Listing of results directory ***
[2025-11-26 04:29:11] total 1705524
[2025-11-26 04:29:11] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc    576529 Nov 21 03:51 pilot3.tar.gz
[2025-11-26 04:29:11] -rwx------ 1 boinc boinc     36292 Nov 21 03:54 runpilot2-wrapper.sh
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc      5112 Nov 21 03:54 queuedata.json
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc       100 Nov 25 13:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:29:11] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 13:34 run_atlas
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc       105 Nov 25 13:34 job.xml
[2025-11-26 04:29:11] -rw-r--r-- 3 boinc boinc 408931177 Nov 25 13:34 EVNT.47493127._002135.pool.root.1
[2025-11-26 04:29:11] -rw-r--r-- 3 boinc boinc 408931177 Nov 25 13:34 ATLAS.root_0
[2025-11-26 04:29:11] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:34 start_atlas.sh
[2025-11-26 04:29:11] drwxrwx--x 2 boinc boinc      4096 Nov 25 13:34 shared
[2025-11-26 04:29:11] -rw-r--r-- 2 boinc boinc    590095 Nov 25 13:34 input.tar.gz
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc         0 Nov 25 13:34 boinc_lockfile
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc      2785 Nov 25 16:57 pandaJob.out
[2025-11-26 04:29:11] -rw------- 1 boinc boinc    991909 Nov 25 16:57 agis_schedconf.cvmfs.json
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc      6674 Nov 25 17:20 init_data.xml
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc       533 Nov 26 03:31 boinc_task_state.xml
[2025-11-26 04:29:11] -rw------- 1 boinc boinc 909242962 Nov 26 03:49 HITS.47533967._001067.pool.root.1
[2025-11-26 04:29:11] -rw------- 1 boinc boinc      1055 Nov 26 03:50 memory_monitor_summary.json
[2025-11-26 04:29:11] -rw------- 1 boinc boinc   1516240 Nov 26 03:50 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:29:11] -rw------- 1 boinc boinc   2320047 Nov 26 03:50 log.47533967._001067.job.log.tgz.1
[2025-11-26 04:29:11] -rw------- 1 boinc boinc      8620 Nov 26 03:50 heartbeat.json
[2025-11-26 04:29:11] -rw------- 1 boinc boinc        96 Nov 26 03:51 pilot_heartbeat.json
[2025-11-26 04:29:11] -rw------- 1 boinc boinc      4826 Nov 26 03:51 pilotlog.txt
[2025-11-26 04:29:11] -rw------- 1 boinc boinc   5390505 Nov 26 03:51 log.47533967._001067.job.log.1
[2025-11-26 04:29:11] -rw------- 1 boinc boinc       353 Nov 26 03:51 output.list
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc       620 Nov 26 03:51 runtime_log
[2025-11-26 04:29:11] -rw------- 1 boinc boinc   7731200 Nov 26 03:51 result.tar.gz
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc      8966 Nov 26 03:51 runtime_log.err
[2025-11-26 04:29:11] -rw------- 1 boinc boinc       800 Nov 26 03:51 BBmKDm2SWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXuIKDm7oY7Kn.diag
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc        29 Nov 26 04:29 wrapper_checkpoint.txt
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc      8192 Nov 26 04:29 boinc_mmap_file
[2025-11-26 04:29:11] -rw-r--r-- 1 boinc boinc     23410 Nov 26 04:29 stderr.txt
[2025-11-26 04:29:11] HITS file was successfully produced:
[2025-11-26 04:29:11] -rw------- 1 boinc boinc 909242962 Nov 26 03:49 shared/HITS.pool.root.1
[2025-11-26 04:29:11]  *** Contents of shared directory: ***
[2025-11-26 04:29:11] total 1295440
[2025-11-26 04:29:11] -rw-r--r-- 3 boinc boinc 408931177 Nov 25 13:34 ATLAS.root_0
[2025-11-26 04:29:11] -rw-r--r-- 2 boinc boinc     15847 Nov 25 13:34 start_atlas.sh
[2025-11-26 04:29:11] -rw-r--r-- 2 boinc boinc    590095 Nov 25 13:34 input.tar.gz
[2025-11-26 04:29:11] -rw------- 1 boinc boinc 909242962 Nov 26 03:49 HITS.pool.root.1
[2025-11-26 04:29:11] -rw------- 1 boinc boinc   7731200 Nov 26 03:51 result.tar.gz
04:29:13 (78675): run_atlas exited; CPU time 230553.478168
04:29:13 (78675): called boinc_finish(0)

</stderr_txt>
]]>

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