Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:26:12 (112841): wrapper (7.7.26015): starting
21:26:12 (112841): wrapper: running run_atlas (--nthreads 2)
[2025-11-27 21:26:12] Arguments: --nthreads 2
[2025-11-27 21:26:12] Threads: 2
[2025-11-27 21:26:12] Checking for CVMFS
[2025-11-27 21:26:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 21:26:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 21:26:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 21:26:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 21:26:12] 2.9.2.0 2844 770 52360 153384 3 81 33084488 36864000 651 130560 0 334601 99.976 43455 32697 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 21:26:12] CVMFS is ok
[2025-11-27 21:26:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:26:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:26:12] Further information can be found at the LHC@home message board.
[2025-11-27 21:26:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:26:12] Checking for apptainer binary...
[2025-11-27 21:26:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 21:26:12] Running /usr/bin/apptainer --version
[2025-11-27 21:26:12] apptainer version 1.4.1-1.1
[2025-11-27 21:26:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:26:12] belleA267a
[2025-11-27 21:26:12] apptainer works
[2025-11-27 21:26:12] Set ATHENA_PROC_NUMBER=2
[2025-11-27 21:26:12] Set ATHENA_CORE_NUMBER=2
[2025-11-27 21:26:12] Starting ATLAS job with PandaID=6895361252
[2025-11-27 21:26:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 09:57:38]  *** The last 200 lines of the pilot log: ***
[2025-11-28 09:57:38] 2025-11-28 08:57:05,707 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 09:57:38] 2025-11-28 08:57:05,708 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 4558.228625
[2025-11-28 09:57:38] 2025-11-28 08:57:05,709 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895361252/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,709 | INFO     | extracted standard info from prmon json
[2025-11-28 09:57:38] 2025-11-28 08:57:05,709 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 09:57:38] 2025-11-28 08:57:05,709 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 09:57:38] 2025-11-28 08:57:05,713 | INFO     | fitting pss+swap vs Time
[2025-11-28 09:57:38] 2025-11-28 08:57:05,713 | INFO     | sum of square deviations: 124636921084.5
[2025-11-28 09:57:38] 2025-11-28 08:57:05,718 | INFO     | sum of deviations: 335875260989.49994
[2025-11-28 09:57:38] 2025-11-28 08:57:05,718 | INFO     | mean x: 1764297675.5
[2025-11-28 09:57:38] 2025-11-28 08:57:05,718 | INFO     | mean y: 2027257.9119241193
[2025-11-28 09:57:38] 2025-11-28 08:57:05,718 | INFO     | intersect: -4752454295.9125395
[2025-11-28 09:57:38] 2025-11-28 08:57:05,718 | INFO     | chi2: 3.0310716872882852
[2025-11-28 09:57:38] 2025-11-28 08:57:05,718 | INFO     | sum of square deviations: 122120771582.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,723 | INFO     | sum of deviations: 389212147732.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,723 | INFO     | mean x: 1764297523.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,723 | INFO     | mean y: 2030476.8185538882
[2025-11-28 09:57:38] 2025-11-28 08:57:05,723 | INFO     | intersect: -5620977134.986381
[2025-11-28 09:57:38] 2025-11-28 08:57:05,723 | INFO     | chi2: 2.2467236127210346
[2025-11-28 09:57:38] 2025-11-28 08:57:05,723 | INFO     | current chi2=2.2467236127210346 (change=25.87692260320504 %)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,724 | INFO     | sum of square deviations: 119638715742.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | sum of deviations: 385870424534.49994
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | mean x: 1764297370.5
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | mean y: 2030271.462912088
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | intersect: -5688353239.741403
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | chi2: 2.2457657079541082
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | current chi2=2.2457657079541082 (change=0.04263563001264027 %)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,728 | INFO     | right removable region: 727
[2025-11-28 09:57:38] 2025-11-28 08:57:05,729 | INFO     | sum of square deviations: 122120771582.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,733 | INFO     | sum of deviations: 201744971210.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,733 | INFO     | mean x: 1764297828.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,733 | INFO     | mean y: 2035378.1609822647
[2025-11-28 09:57:38] 2025-11-28 08:57:05,733 | INFO     | intersect: -2912605676.7943983
[2025-11-28 09:57:38] 2025-11-28 08:57:05,733 | INFO     | chi2: 1.10582523185041
[2025-11-28 09:57:38] 2025-11-28 08:57:05,733 | INFO     | current chi2=1.10582523185041 (change=63.517021504703365 %)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,734 | INFO     | sum of square deviations: 119638715742.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | sum of deviations: 163286390117.5
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | mean x: 1764297980.5
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | mean y: 2037733.679945055
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | intersect: -2405927334.657092
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | chi2: 0.8673581793593357
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | current chi2=0.8673581793593357 (change=21.564623922718816 %)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,738 | INFO     | left removable region: 20
[2025-11-28 09:57:38] 2025-11-28 08:57:05,739 | INFO     | sum of square deviations: 109581135538.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | sum of deviations: 199522290114.99963
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | mean x: 1764297950.0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | mean y: 2041870.117397454
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | intersect: -3210342868.3773823
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | chi2: 0.07592959957282697
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | current memory leak: 1.82 B/s (using 707 data points, chi2=0.08)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,743 | INFO     | could have reported an average CPU frequency of 4543 MHz (28 samples)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | ..............................
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . Timing measurements:
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . get job = 0 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . initial setup = 1 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . payload setup = 2 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . stage-in = 0 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . payload execution = 45018 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . stage-out = 0 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | . log creation = 0 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,744 | INFO     | ..............................
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | 
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | job summary report
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | --------------------------------------------------
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | PanDA job id: 6895361252
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | task id: 47556137
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | errors: (none)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | pilot state: finished 
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | transexitcode: 0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | exeerrorcode: 0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | exeerrordiag: 
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | exitcode: 0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,909 | INFO     | exitmsg: OK
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | cpuconsumptiontime: 89258 s
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | nevents: 1000
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | neventsw: 0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | pid: 122971
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | pgrp: 122971
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | corecount: 2
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | event service: False
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | sizes: {0: 2284317, 2: 2284579, 10: 2284607, 45024: 2331051, 45026: 2340051, 45029: 2340107, 45034: 2340481}
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | --------------------------------------------------
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | 
[2025-11-28 09:57:38] 2025-11-28 08:57:05,910 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | job 6895361252 has completed (purged errors)
[2025-11-28 09:57:38] 2025-11-28 08:57:05,922 | INFO     | overall cleanup function is called
[2025-11-28 09:57:38] 2025-11-28 08:57:06,131 | INFO     | PID=116547 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 09:57:38] 2025-11-28 08:57:06,929 | INFO     | --- collectZombieJob: --- 10, [122971]
[2025-11-28 09:57:38] 2025-11-28 08:57:06,929 | INFO     | zombie collector waiting for pid 122971
[2025-11-28 09:57:38] 2025-11-28 08:57:06,929 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 09:57:38] 2025-11-28 08:57:06,929 | INFO     | collected zombie processes
[2025-11-28 09:57:38] 2025-11-28 08:57:06,929 | INFO     | will attempt to kill all subprocesses of pid=122971
[2025-11-28 09:57:38] 2025-11-28 08:57:06,958 | INFO     | process IDs to be killed: [122971] (in reverse order)
[2025-11-28 09:57:38] 2025-11-28 08:57:06,979 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 09:57:38] 2025-11-28 08:57:06,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 09:57:38] 2025-11-28 08:57:06,980 | INFO     | did not find any defunct processes belonging to 122971
[2025-11-28 09:57:38] 2025-11-28 08:57:06,981 | INFO     | did not find any defunct processes belonging to 122971
[2025-11-28 09:57:38] 2025-11-28 08:57:06,981 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 09:57:38] 2025-11-28 08:57:06,982 | INFO     | ready for new job
[2025-11-28 09:57:38] 2025-11-28 08:57:06,982 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 09:57:38] 2025-11-28 08:57:06,983 | INFO     | ***************************************
[2025-11-28 09:57:38] 2025-11-28 08:57:06,983 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 09:57:38] 2025-11-28 08:57:06,983 | INFO     | ***************************************
[2025-11-28 09:57:38] 2025-11-28 08:57:06,983 | INFO     | 
[2025-11-28 09:57:38] 2025-11-28 08:57:06,983 | INFO     | architecture information:
[2025-11-28 09:57:38] 2025-11-28 08:57:06,983 | INFO     | executing command: cat /etc/os-release
[2025-11-28 09:57:38] 2025-11-28 08:57:06,991 | INFO     | cat /etc/os-release:
[2025-11-28 09:57:38] NAME="CentOS Linux"
[2025-11-28 09:57:38] VERSION="7 (Core)"
[2025-11-28 09:57:38] ID="centos"
[2025-11-28 09:57:38] ID_LIKE="rhel fedora"
[2025-11-28 09:57:38] VERSION_ID="7"
[2025-11-28 09:57:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 09:57:38] ANSI_COLOR="0;31"
[2025-11-28 09:57:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 09:57:38] HOME_URL="https://www.centos.org/"
[2025-11-28 09:57:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 09:57:38] 
[2025-11-28 09:57:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 09:57:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 09:57:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 09:57:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 09:57:38] 
[2025-11-28 09:57:38] 2025-11-28 08:57:06,992 | INFO     | ***************************************
[2025-11-28 09:57:38] 2025-11-28 08:57:07,494 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | INFO     | sufficient remaining disk space (300479938560 B)
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | INFO     | update_server=False
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:57:38] 2025-11-28 08:57:07,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 09:57:38] 2025-11-28 08:57:07,736 | INFO     | all payload control threads have been joined
[2025-11-28 09:57:38] 2025-11-28 08:57:07,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 09:57:38] 2025-11-28 08:57:07,819 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 09:57:38] 2025-11-28 08:57:07,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:57:38] 2025-11-28 08:57:07,819 | INFO     | will abort loop
[2025-11-28 09:57:38] 2025-11-28 08:57:08,056 | INFO     | all data control threads have been joined
[2025-11-28 09:57:38] 2025-11-28 08:57:08,438 | INFO     | all job control threads have been joined
[2025-11-28 09:57:38] 2025-11-28 08:57:08,508 | INFO     | [job] retrieve thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,508 | INFO     | [job] queue monitor thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 09:57:38] 2025-11-28 08:57:08,643 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,647 | INFO     | [job] validate thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,741 | INFO     | [payload] control thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,783 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,824 | INFO     | [job] job monitor thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:08,972 | INFO     | [payload] failed_post thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:09,061 | INFO     | [data] control thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:09,131 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:09,444 | INFO     | [job] control thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:09,493 | INFO     | [data] copytool_in thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:09,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:09,601 | INFO     | [payload] validate_post thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:10,530 | INFO     | [data] copytool_out thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:11,509 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 09:57:38] 2025-11-28 08:57:22,264 | INFO     | [monitor] cgroup control has ended
[2025-11-28 09:57:38] 2025-11-28 08:57:22,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140537089521472)>', '<ExcThread(monitor, started 140536144975616)>']
[2025-11-28 09:57:38] 2025-11-28 08:57:27,351 | INFO     | all workflow threads have been joined
[2025-11-28 09:57:38] 2025-11-28 08:57:27,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 09:57:38] 2025-11-28 08:57:27,351 | INFO     | traces error code: 0
[2025-11-28 09:57:38] 2025-11-28 08:57:27,351 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | INFO     | PID=116547 has CPU usage=0.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 09:57:38] 2025-11-28 08:57:38,232 | INFO     | [monitor] control thread has ended
[2025-11-28 09:57:38] 2025-11-28 08:57:38,270 [wrapper] ==== pilot stdout END ====
[2025-11-28 09:57:38] 2025-11-28 08:57:38,273 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 09:57:38] 2025-11-28 08:57:38,275 [wrapper] pilotpid: 116547
[2025-11-28 09:57:38] 2025-11-28 08:57:38,278 [wrapper] Pilot exit status: 0
[2025-11-28 09:57:38] 2025-11-28 08:57:38,284 [wrapper] pandaids: 6895361252
[2025-11-28 09:57:38] 2025-11-28 08:57:38,295 [wrapper] cleanup supervisor_pilot  200361 116548
[2025-11-28 09:57:38] 2025-11-28 08:57:38,298 [wrapper] Test setup, not cleaning
[2025-11-28 09:57:38] 2025-11-28 08:57:38,300 [wrapper] apfmon messages muted
[2025-11-28 09:57:38] 2025-11-28 08:57:38,302 [wrapper] ==== wrapper stdout END ====
[2025-11-28 09:57:38] 2025-11-28 08:57:38,304 [wrapper] ==== wrapper stderr END ====
[2025-11-28 09:57:38]  *** Error codes and diagnostics ***
[2025-11-28 09:57:38]     "exeErrorCode": 0,
[2025-11-28 09:57:38]     "exeErrorDiag": "",
[2025-11-28 09:57:38]     "pilotErrorCode": 0,
[2025-11-28 09:57:38]     "pilotErrorDiag": "",
[2025-11-28 09:57:38]  *** Listing of results directory ***
[2025-11-28 09:57:38] total 1328980
[2025-11-28 09:57:38] -rwx------ 1 boinc boinc     36292 Nov 23 15:16 runpilot2-wrapper.sh
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc      5112 Nov 23 15:16 queuedata.json
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc       100 Nov 27 21:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 09:57:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 21:26 run_atlas
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc       105 Nov 27 21:26 job.xml
[2025-11-28 09:57:38] -rw-r--r-- 2 boinc boinc 409822887 Nov 27 21:26 EVNT.47483658._000761.pool.root.1
[2025-11-28 09:57:38] drwxrwx--x 2 boinc boinc      4096 Nov 27 21:26 shared
[2025-11-28 09:57:38] -rw-r--r-- 2 boinc boinc    590097 Nov 27 21:26 input.tar.gz
[2025-11-28 09:57:38] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:26 start_atlas.sh
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:26 boinc_setup_complete
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc      6209 Nov 27 21:26 init_data.xml
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:26 boinc_lockfile
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc      2785 Nov 27 21:26 pandaJob.out
[2025-11-28 09:57:38] -rw------- 1 boinc boinc    991500 Nov 27 21:26 agis_schedconf.cvmfs.json
[2025-11-28 09:57:38] drwx------ 5 boinc boinc      4096 Nov 27 21:26 pilot3
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc       531 Nov 28 09:54 boinc_task_state.xml
[2025-11-28 09:57:38] -rw------- 1 boinc boinc 932067840 Nov 28 09:56 HITS.47556137._007568.pool.root.1
[2025-11-28 09:57:38] -rw------- 1 boinc boinc      1025 Nov 28 09:56 memory_monitor_summary.json
[2025-11-28 09:57:38] -rw------- 1 boinc boinc   1516240 Nov 28 09:56 agis_ddmendpoints.agis.ALL.json
[2025-11-28 09:57:38] -rw------- 1 boinc boinc   1228594 Nov 28 09:56 log.47556137._007568.job.log.tgz.1
[2025-11-28 09:57:38] -rw------- 1 boinc boinc      8566 Nov 28 09:57 heartbeat.json
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc      8192 Nov 28 09:57 boinc_mmap_file
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc        28 Nov 28 09:57 wrapper_checkpoint.txt
[2025-11-28 09:57:38] -rw------- 1 boinc boinc       816 Nov 28 09:57 pilotlog.txt
[2025-11-28 09:57:38] -rw------- 1 boinc boinc        95 Nov 28 09:57 pilot_heartbeat.json
[2025-11-28 09:57:38] -rw------- 1 boinc boinc   6310630 Nov 28 09:57 log.47556137._007568.job.log.1
[2025-11-28 09:57:38] -rw------- 1 boinc boinc       353 Nov 28 09:57 output.list
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc       620 Nov 28 09:57 runtime_log
[2025-11-28 09:57:38] -rw------- 1 boinc boinc   7557120 Nov 28 09:57 result.tar.gz
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc      8918 Nov 28 09:57 runtime_log.err
[2025-11-28 09:57:38] -rw------- 1 boinc boinc       669 Nov 28 09:57 ZXsNDma4Ph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzxKKDmco4jwn.diag
[2025-11-28 09:57:38] -rw-r--r-- 1 boinc boinc     21293 Nov 28 09:57 stderr.txt
[2025-11-28 09:57:38] HITS file was successfully produced:
[2025-11-28 09:57:38] -rw------- 1 boinc boinc 932067840 Nov 28 09:56 shared/HITS.pool.root.1
[2025-11-28 09:57:38]  *** Contents of shared directory: ***
[2025-11-28 09:57:38] total 1318424
[2025-11-28 09:57:38] -rw-r--r-- 2 boinc boinc 409822887 Nov 27 21:26 ATLAS.root_0
[2025-11-28 09:57:38] -rw-r--r-- 2 boinc boinc    590097 Nov 27 21:26 input.tar.gz
[2025-11-28 09:57:38] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:26 start_atlas.sh
[2025-11-28 09:57:38] -rw------- 1 boinc boinc 932067840 Nov 28 09:56 HITS.pool.root.1
[2025-11-28 09:57:38] -rw------- 1 boinc boinc   7557120 Nov 28 09:57 result.tar.gz
09:57:39 (112841): run_atlas exited; CPU time 89368.538600
09:57:39 (112841): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN