Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:28:39 (3071354): wrapper (7.7.26015): starting
16:28:39 (3071354): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 16:28:39] Arguments: --nthreads 8
[2025-11-24 16:28:39] Threads: 8
[2025-11-24 16:28:39] Checking for CVMFS
[2025-11-24 16:28:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:28:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:28:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:28:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:28:40] 2.13.3.0 10978 27664 342680 153259 0 96 38777758 40960001 15627 16776704 0 62915012 99.516 81592444 38865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 16:28:40] CVMFS is ok
[2025-11-24 16:28:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 16:28:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 16:28:40] Further information can be found at the LHC@home message board.
[2025-11-24 16:28:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:28:40] Checking for apptainer binary...
[2025-11-24 16:28:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:28:40] Running /usr/bin/apptainer --version
[2025-11-24 16:28:40] apptainer version 1.4.4-1.el9
[2025-11-24 16:28:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:28:40] c6-8-12-1.aglt2.org
[2025-11-24 16:28:40] apptainer works
[2025-11-24 16:28:40] Set ATHENA_PROC_NUMBER=8
[2025-11-24 16:28:40] Set ATHENA_CORE_NUMBER=8
[2025-11-24 16:28:41] Starting ATLAS job with PandaID=6895352655
[2025-11-24 16:28:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:39:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:39:36] 2025-11-26 03:38:45,954 | INFO     | time since job start (108587s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:46,911 | INFO     | monitor loop #6509: job 0:6895352655 is in state 'finished'
[2025-11-25 22:39:36] 2025-11-26 03:38:46,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:36] 2025-11-26 03:38:47,963 | INFO     | time since job start (108589s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:49,455 | INFO     | monitor loop #6510: job 0:6895352655 is in state 'finished'
[2025-11-25 22:39:36] 2025-11-26 03:38:49,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:36] 2025-11-26 03:38:50,003 | INFO     | time since job start (108592s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:51,971 | INFO     | monitor loop #6511: job 0:6895352655 is in state 'finished'
[2025-11-25 22:39:36] 2025-11-26 03:38:51,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:36] 2025-11-26 03:38:52,019 | INFO     | time since job start (108594s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:54,026 | INFO     | time since job start (108596s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:54,489 | INFO     | monitor loop #6512: job 0:6895352655 is in state 'finished'
[2025-11-25 22:39:36] 2025-11-26 03:38:54,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:36] 2025-11-26 03:38:56,039 | INFO     | time since job start (108598s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:57,002 | INFO     | monitor loop #6513: job 0:6895352655 is in state 'finished'
[2025-11-25 22:39:36] 2025-11-26 03:38:57,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,046 | INFO     | time since job start (108600s) is within the limit (172800.0s)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,082 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 22:39:36] 2025-11-26 03:38:58,104 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3094.5498035714277
[2025-11-25 22:39:36] 2025-11-26 03:38:58,126 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895352655/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,129 | INFO     | extracted standard info from prmon json
[2025-11-25 22:39:36] 2025-11-26 03:38:58,129 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:39:36] 2025-11-26 03:38:58,129 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:39:36] 2025-11-26 03:38:58,177 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:39:36] 2025-11-26 03:38:58,183 | INFO     | sum of square deviations: 1745829212881.8184
[2025-11-25 22:39:36] 2025-11-26 03:38:58,292 | INFO     | sum of deviations: 5218184502842.524
[2025-11-25 22:39:36] 2025-11-26 03:38:58,293 | INFO     | mean x: 1764074007.010118
[2025-11-25 22:39:36] 2025-11-26 03:38:58,293 | INFO     | mean y: 2860700.971332209
[2025-11-25 22:39:36] 2025-11-26 03:38:58,293 | INFO     | intersect: -5269856456.769715
[2025-11-25 22:39:36] 2025-11-26 03:38:58,301 | INFO     | chi2: 21.741160264400328
[2025-11-25 22:39:36] 2025-11-26 03:38:58,303 | INFO     | sum of square deviations: 1731152257628.6882
[2025-11-25 22:39:36] 2025-11-26 03:38:58,411 | INFO     | sum of deviations: 5817789484712.71
[2025-11-25 22:39:36] 2025-11-26 03:38:58,411 | INFO     | mean x: 1764073854.5214205
[2025-11-25 22:39:36] 2025-11-26 03:38:58,411 | INFO     | mean y: 2866929.797068771
[2025-11-25 22:39:36] 2025-11-26 03:38:58,412 | INFO     | intersect: -5925560379.739233
[2025-11-25 22:39:36] 2025-11-26 03:38:58,417 | INFO     | chi2: 18.335184137847772
[2025-11-25 22:39:36] 2025-11-26 03:38:58,418 | INFO     | current chi2=18.335184137847772 (change=15.66602741128591 %)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,418 | INFO     | right removable region: 1773
[2025-11-25 22:39:36] 2025-11-26 03:38:58,420 | INFO     | sum of square deviations: 1731147905888.6855
[2025-11-25 22:39:36] 2025-11-26 03:38:58,531 | INFO     | sum of deviations: 4672264342948.954
[2025-11-25 22:39:36] 2025-11-26 03:38:58,531 | INFO     | mean x: 1764074159.5214205
[2025-11-25 22:39:36] 2025-11-26 03:38:58,531 | INFO     | mean y: 2866370.0930101466
[2025-11-25 22:39:36] 2025-11-26 03:38:58,531 | INFO     | intersect: -4758263956.098518
[2025-11-25 22:39:36] 2025-11-26 03:38:58,537 | INFO     | chi2: 19.3442119550484
[2025-11-25 22:39:36] 2025-11-26 03:38:58,537 | INFO     | current chi2=19.3442119550484 (change=11.024932801202736 %)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,537 | INFO     | left removable region: 10
[2025-11-25 22:39:36] 2025-11-26 03:38:58,539 | INFO     | sum of square deviations: 1699144587106.3687
[2025-11-25 22:39:36] 2025-11-26 03:38:58,650 | INFO     | sum of deviations: 5158865612090.533
[2025-11-25 22:39:36] 2025-11-26 03:38:58,650 | INFO     | mean x: 1764074129.0453773
[2025-11-25 22:39:36] 2025-11-26 03:38:58,650 | INFO     | mean y: 2876403.2308564945
[2025-11-25 22:39:36] 2025-11-26 03:38:58,650 | INFO     | intersect: -5353125334.684248
[2025-11-25 22:39:36] 2025-11-26 03:38:58,652 | INFO     | chi2: 14.777864525490164
[2025-11-25 22:39:36] 2025-11-26 03:38:58,652 | INFO     | current memory leak: 3.04 B/s (using 1763 data points, chi2=14.78)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,658 | INFO     | could have reported an average CPU frequency of 2860 MHz (62 samples)
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | ..............................
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . Timing measurements:
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . get job = 0 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . initial setup = 3 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . payload setup = 9 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . stage-in = 0 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . payload execution = 108493 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . stage-out = 12 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | . log creation = 3 s
[2025-11-25 22:39:36] 2025-11-26 03:38:58,659 | INFO     | ..............................
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | 
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | job summary report
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | --------------------------------------------------
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | PanDA job id: 6895352655
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | task id: 47556149
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | errors: (none)
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | pilot state: finished 
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | transexitcode: 0
[2025-11-25 22:39:36] 2025-11-26 03:38:59,219 | INFO     | exeerrorcode: 0
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | exeerrordiag: 
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | exitcode: 0
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | exitmsg: OK
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | cpuconsumptiontime: 248892 s
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | nevents: 1000
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | neventsw: 0
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | pid: 3081737
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | pgrp: 3081737
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | corecount: 8
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | event service: False
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | sizes: {0: 2283430, 1: 2284286, 2: 2284286, 8: 2284576, 12: 2284604, 108507: 2359442, 108520: 2368441, 108523: 2368497, 108581: 2368743}
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | --------------------------------------------------
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | 
[2025-11-25 22:39:36] 2025-11-26 03:38:59,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:39:36] 2025-11-26 03:38:59,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:39:36] 2025-11-26 03:38:59,427 | INFO     | job 6895352655 has completed (purged errors)
[2025-11-25 22:39:36] 2025-11-26 03:38:59,427 | INFO     | overall cleanup function is called
[2025-11-25 22:39:36] 2025-11-26 03:39:00,481 | INFO     | --- collectZombieJob: --- 10, [3081737]
[2025-11-25 22:39:36] 2025-11-26 03:39:00,481 | INFO     | zombie collector waiting for pid 3081737
[2025-11-25 22:39:36] 2025-11-26 03:39:00,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:39:36] 2025-11-26 03:39:00,481 | INFO     | collected zombie processes
[2025-11-25 22:39:36] 2025-11-26 03:39:00,481 | INFO     | will attempt to kill all subprocesses of pid=3081737
[2025-11-25 22:39:36] 2025-11-26 03:39:01,196 | INFO     | process IDs to be killed: [3081737] (in reverse order)
[2025-11-25 22:39:36] 2025-11-26 03:39:01,765 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:39:36] 2025-11-26 03:39:01,766 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:39:36] 2025-11-26 03:39:01,778 | INFO     | did not find any defunct processes belonging to 3081737
[2025-11-25 22:39:36] 2025-11-26 03:39:01,791 | INFO     | did not find any defunct processes belonging to 3081737
[2025-11-25 22:39:36] 2025-11-26 03:39:01,896 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:39:36] 2025-11-26 03:39:01,896 | INFO     | ready for new job
[2025-11-25 22:39:36] 2025-11-26 03:39:01,896 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:39:36] 2025-11-26 03:39:01,932 | INFO     | ***************************************
[2025-11-25 22:39:36] 2025-11-26 03:39:01,932 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:39:36] 2025-11-26 03:39:01,953 | INFO     | ***************************************
[2025-11-25 22:39:36] 2025-11-26 03:39:01,953 | INFO     | 
[2025-11-25 22:39:36] 2025-11-26 03:39:01,956 | INFO     | architecture information:
[2025-11-25 22:39:36] 2025-11-26 03:39:01,969 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:39:36] 2025-11-26 03:39:02,212 | INFO     | cat /etc/os-release:
[2025-11-25 22:39:36] NAME="CentOS Linux"
[2025-11-25 22:39:36] VERSION="7 (Core)"
[2025-11-25 22:39:36] ID="centos"
[2025-11-25 22:39:36] ID_LIKE="rhel fedora"
[2025-11-25 22:39:36] VERSION_ID="7"
[2025-11-25 22:39:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:39:36] ANSI_COLOR="0;31"
[2025-11-25 22:39:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:39:36] HOME_URL="https://www.centos.org/"
[2025-11-25 22:39:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:39:36] 
[2025-11-25 22:39:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:39:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:39:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:39:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:39:36] 
[2025-11-25 22:39:36] 2025-11-26 03:39:02,213 | INFO     | ***************************************
[2025-11-25 22:39:36] 2025-11-26 03:39:02,725 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 22:39:36] 2025-11-26 03:39:02,983 | INFO     | sufficient remaining disk space (52882833408 B)
[2025-11-25 22:39:36] 2025-11-26 03:39:02,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:39:36] 2025-11-26 03:39:02,983 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:39:36] 2025-11-26 03:39:02,984 | INFO     | update_server=False
[2025-11-25 22:39:36] 2025-11-26 03:39:02,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:39:36] 2025-11-26 03:39:03,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:39:36] 2025-11-26 03:39:03,059 | INFO     | aborting loop
[2025-11-25 22:39:36] 2025-11-26 03:39:03,337 | INFO     | all data control threads have been joined
[2025-11-25 22:39:36] 2025-11-26 03:39:03,539 | INFO     | all job control threads have been joined
[2025-11-25 22:39:36] 2025-11-26 03:39:03,990 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:04,065 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:04,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:39:36] 2025-11-26 03:39:04,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:39:36] 2025-11-26 03:39:04,343 | INFO     | [data] control thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:04,359 | INFO     | all payload control threads have been joined
[2025-11-25 22:39:36] 2025-11-26 03:39:04,474 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:04,545 | INFO     | [job] control thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:04,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,067 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,083 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,085 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,104 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,104 | INFO     | [job] validate thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,202 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,240 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:05,364 | INFO     | [payload] control thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:06,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:39:36] 2025-11-26 03:39:06,345 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:10,223 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:39:36] 2025-11-26 03:39:17,397 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:39:36] 2025-11-26 03:39:19,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139713528448832)>', '<ExcThread(monitor, started 139713172190976)>']
[2025-11-25 22:39:36] 2025-11-26 03:39:24,248 | INFO     | all workflow threads have been joined
[2025-11-25 22:39:36] 2025-11-26 03:39:24,248 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:39:36] 2025-11-26 03:39:24,248 | INFO     | traces error code: 0
[2025-11-25 22:39:36] 2025-11-26 03:39:24,248 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | INFO     | PID=3075102 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | INFO     | .. there are 19 such processes running
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:39:36] 2025-11-26 03:39:32,975 | INFO     | [monitor] control thread has ended
[2025-11-25 22:39:36] 2025-11-26 03:39:33,419 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:39:36] 2025-11-26 03:39:33,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:39:36] 2025-11-26 03:39:33,492 [wrapper] pilotpid: 3075102
[2025-11-25 22:39:36] 2025-11-26 03:39:33,522 [wrapper] Pilot exit status: 0
[2025-11-25 22:39:36] 2025-11-26 03:39:33,697 [wrapper] pandaids: 6895352655
[2025-11-25 22:39:36] 2025-11-26 03:39:34,266 [wrapper] cleanup supervisor_pilot 3380334 3075103
[2025-11-25 22:39:36] 2025-11-26 03:39:34,299 [wrapper] Test setup, not cleaning
[2025-11-25 22:39:36] 2025-11-26 03:39:34,346 [wrapper] apfmon messages muted
[2025-11-25 22:39:36] 2025-11-26 03:39:34,398 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:39:36] 2025-11-26 03:39:34,445 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:39:36]  *** Error codes and diagnostics ***
[2025-11-25 22:39:36]     "exeErrorCode": 0,
[2025-11-25 22:39:36]     "exeErrorDiag": "",
[2025-11-25 22:39:36]     "pilotErrorCode": 0,
[2025-11-25 22:39:36]     "pilotErrorDiag": "",
[2025-11-25 22:39:36]  *** Listing of results directory ***
[2025-11-25 22:39:36] total 1335160
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 22:01 pilot3.tar.gz
[2025-11-25 22:39:36] -rwx------. 1 boincer umatlas     36292 Nov 22 22:35 runpilot2-wrapper.sh
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 22:35 queuedata.json
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas       100 Nov 24 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:39:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 16:28 run_atlas
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas       105 Nov 24 16:28 job.xml
[2025-11-25 22:39:36] -rw-r--r--. 2 boincer umatlas 411639452 Nov 24 16:28 EVNT.47483658._001134.pool.root.1
[2025-11-25 22:39:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:28 start_atlas.sh
[2025-11-25 22:39:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 16:28 shared
[2025-11-25 22:39:36] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 16:28 input.tar.gz
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas         0 Nov 24 16:28 boinc_lockfile
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 16:28 pandaJob.out
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas        57 Nov 24 16:28 setup.sh.local
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas    991801 Nov 24 16:28 agis_schedconf.cvmfs.json
[2025-11-25 22:39:36] drwx------. 5 boincer umatlas      4096 Nov 24 16:28 pilot3
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas       533 Nov 25 22:09 boinc_task_state.xml
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas 918968150 Nov 25 22:36 HITS.47556149._001209.pool.root.1
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas      1059 Nov 25 22:37 memory_monitor_summary.json
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas   1516240 Nov 25 22:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas   2695492 Nov 25 22:37 log.47556149._001209.job.log.tgz.1
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas        95 Nov 25 22:38 pilot_heartbeat.json
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 22:38 init_data.xml
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas      8621 Nov 25 22:38 heartbeat.json
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas       823 Nov 25 22:39 pilotlog.txt
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 22:39 boinc_mmap_file
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas        29 Nov 25 22:39 wrapper_checkpoint.txt
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas  13650925 Nov 25 22:39 log.47556149._001209.job.log.1
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas       353 Nov 25 22:39 output.list
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas       620 Nov 25 22:39 runtime_log
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas  16363520 Nov 25 22:39 result.tar.gz
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas      9349 Nov 25 22:39 runtime_log.err
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas       664 Nov 25 22:39 RQUKDmT4Fh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsaKKDmYihnRm.diag
[2025-11-25 22:39:36] -rw-r--r--. 1 boincer umatlas      8241 Nov 25 22:39 stderr.txt
[2025-11-25 22:39:36] HITS file was successfully produced:
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas 918968150 Nov 25 22:36 shared/HITS.pool.root.1
[2025-11-25 22:39:36]  *** Contents of shared directory: ***
[2025-11-25 22:39:36] total 1316008
[2025-11-25 22:39:36] -rw-r--r--. 2 boincer umatlas 411639452 Nov 24 16:28 ATLAS.root_0
[2025-11-25 22:39:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:28 start_atlas.sh
[2025-11-25 22:39:36] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 16:28 input.tar.gz
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas 918968150 Nov 25 22:36 HITS.pool.root.1
[2025-11-25 22:39:36] -rw-------. 1 boincer umatlas  16363520 Nov 25 22:39 result.tar.gz
22:39:38 (3071354): run_atlas exited; CPU time 250900.721175
22:39:38 (3071354): called boinc_finish(0)

</stderr_txt>
]]>

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