Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:12:21 (2719022): wrapper (7.7.26015): starting
16:12:21 (2719022): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 16:12:21] Arguments: --nthreads 8
[2025-11-24 16:12:21] Threads: 8
[2025-11-24 16:12:21] Checking for CVMFS
[2025-11-24 16:12:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:12:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:12:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:12:21] 2.13.3.0 12388 27647 241300 153258 2 839 22803402 32935936 35676 16776704 0 107881860 99.486 129031536 36322 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 16:12:21] CVMFS is ok
[2025-11-24 16:12:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 16:12:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 16:12:21] Further information can be found at the LHC@home message board.
[2025-11-24 16:12:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:12:21] Checking for apptainer binary...
[2025-11-24 16:12:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:12:21] Running /usr/bin/apptainer --version
[2025-11-24 16:12:21] apptainer version 1.4.4-1.el9
[2025-11-24 16:12:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:12:21] c7-4-31.aglt2.org
[2025-11-24 16:12:21] apptainer works
[2025-11-24 16:12:21] Set ATHENA_PROC_NUMBER=8
[2025-11-24 16:12:21] Set ATHENA_CORE_NUMBER=8
[2025-11-24 16:12:21] Starting ATLAS job with PandaID=6895359063
[2025-11-24 16:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:46:03]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:46:03] 2025-11-25 18:45:16,723 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 13:46:03] 2025-11-25 18:45:16,724 | INFO     | log transfer has been attempted: DONE
[2025-11-25 13:46:03] 2025-11-25 18:45:16,724 | INFO     | job 6895359063 has finished - writing final server update
[2025-11-25 13:46:03] 2025-11-25 18:45:16,724 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 13:46:03] 2025-11-25 18:45:16,724 | INFO     | executing command: lscpu
[2025-11-25 13:46:03] 2025-11-25 18:45:16,790 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 13:46:03] 2025-11-25 18:45:16,819 | INFO     | time since job start (77562s) is within the limit (172800.0s)
[2025-11-25 13:46:03] 2025-11-25 18:45:18,652 | INFO     | monitor loop #4125: job 0:6895359063 is in state 'finished'
[2025-11-25 13:46:03] 2025-11-25 18:45:18,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:46:03] 2025-11-25 18:45:18,826 | INFO     | time since job start (77564s) is within the limit (172800.0s)
[2025-11-25 13:46:03] 2025-11-25 18:45:20,843 | INFO     | time since job start (77566s) is within the limit (172800.0s)
[2025-11-25 13:46:03] 2025-11-25 18:45:21,180 | INFO     | monitor loop #4126: job 0:6895359063 is in state 'finished'
[2025-11-25 13:46:03] 2025-11-25 18:45:21,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:46:03] 2025-11-25 18:45:22,851 | INFO     | time since job start (77568s) is within the limit (172800.0s)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,685 | INFO     | monitor loop #4127: job 0:6895359063 is in state 'finished'
[2025-11-25 13:46:03] 2025-11-25 18:45:23,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,707 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 13:46:03] 2025-11-25 18:45:23,711 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3074.244072916665
[2025-11-25 13:46:03] 2025-11-25 18:45:23,725 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895359063/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,726 | INFO     | extracted standard info from prmon json
[2025-11-25 13:46:03] 2025-11-25 18:45:23,726 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:46:03] 2025-11-25 18:45:23,726 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:46:03] 2025-11-25 18:45:23,745 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:46:03] 2025-11-25 18:45:23,747 | INFO     | sum of square deviations: 636678605423.5477
[2025-11-25 13:46:03] 2025-11-25 18:45:23,783 | INFO     | sum of deviations: 16900333775350.84
[2025-11-25 13:46:03] 2025-11-25 18:45:23,783 | INFO     | mean x: 1764057519.612903
[2025-11-25 13:46:03] 2025-11-25 18:45:23,783 | INFO     | mean y: 3956826.1195908734
[2025-11-25 13:46:03] 2025-11-25 18:45:23,783 | INFO     | intersect: -46822119354.87992
[2025-11-25 13:46:03] 2025-11-25 18:45:23,785 | INFO     | chi2: 23.051545630638017
[2025-11-25 13:46:03] 2025-11-25 18:45:23,786 | INFO     | sum of square deviations: 629194932192.9897
[2025-11-25 13:46:03] 2025-11-25 18:45:23,815 | INFO     | sum of deviations: 17419162715548.906
[2025-11-25 13:46:03] 2025-11-25 18:45:23,815 | INFO     | mean x: 1764057367.1192732
[2025-11-25 13:46:03] 2025-11-25 18:45:23,815 | INFO     | mean y: 3967393.36492891
[2025-11-25 13:46:03] 2025-11-25 18:45:23,815 | INFO     | intersect: -48833683301.48881
[2025-11-25 13:46:03] 2025-11-25 18:45:23,816 | INFO     | chi2: 19.797038905691167
[2025-11-25 13:46:03] 2025-11-25 18:45:23,816 | INFO     | current chi2=19.797038905691167 (change=14.118388315884797 %)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,817 | INFO     | right removable region: 1265
[2025-11-25 13:46:03] 2025-11-25 18:45:23,818 | INFO     | sum of square deviations: 629193758982.2272
[2025-11-25 13:46:03] 2025-11-25 18:45:23,848 | INFO     | sum of deviations: 16373236242080.277
[2025-11-25 13:46:03] 2025-11-25 18:45:23,848 | INFO     | mean x: 1764057672.1184833
[2025-11-25 13:46:03] 2025-11-25 18:45:23,848 | INFO     | mean y: 3967557.684834123
[2025-11-25 13:46:03] 2025-11-25 18:45:23,848 | INFO     | intersect: -45901339985.37041
[2025-11-25 13:46:03] 2025-11-25 18:45:23,849 | INFO     | chi2: 20.923110444798297
[2025-11-25 13:46:03] 2025-11-25 18:45:23,850 | INFO     | current chi2=20.923110444798297 (change=9.233372980468598 %)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,850 | INFO     | left removable region: 10
[2025-11-25 13:46:03] 2025-11-25 18:45:23,851 | INFO     | sum of square deviations: 612935758760.9678
[2025-11-25 13:46:03] 2025-11-25 18:45:23,882 | INFO     | sum of deviations: 16671882826624.648
[2025-11-25 13:46:03] 2025-11-25 18:45:23,882 | INFO     | mean x: 1764057641.6286852
[2025-11-25 13:46:03] 2025-11-25 18:45:23,882 | INFO     | mean y: 3985398.9434262947
[2025-11-25 13:46:03] 2025-11-25 18:45:23,883 | INFO     | intersect: -47978469336.76503
[2025-11-25 13:46:03] 2025-11-25 18:45:23,884 | INFO     | chi2: 17.237316833664
[2025-11-25 13:46:03] 2025-11-25 18:45:23,884 | INFO     | current memory leak: 27.20 B/s (using 1255 data points, chi2=17.24)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,885 | INFO     | could have reported an average CPU frequency of 3107 MHz (46 samples)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | ..............................
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . Timing measurements:
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . get job = 0 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . initial setup = 2 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . payload setup = 6 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . stage-in = 0 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . payload execution = 77528 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . stage-out = 4 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | . log creation = 1 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,886 | INFO     | ..............................
[2025-11-25 13:46:03] 2025-11-25 18:45:23,969 | INFO     | 
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | job summary report
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | --------------------------------------------------
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | PanDA job id: 6895359063
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | task id: 47556137
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | errors: (none)
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:46:03] 2025-11-25 18:45:23,972 | INFO     | pilot state: finished 
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | transexitcode: 0
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | exeerrorcode: 0
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | exeerrordiag: 
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | exitcode: 0
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | exitmsg: OK
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | cpuconsumptiontime: 207980 s
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | nevents: 1000
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | neventsw: 0
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | pid: 2733386
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | pgrp: 2733386
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | corecount: 8
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | event service: False
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | sizes: {0: 2284259, 5: 2284521, 11: 2284577, 77539: 2344560, 77544: 2353615, 77553: 2353805}
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | --------------------------------------------------
[2025-11-25 13:46:03] 2025-11-25 18:45:23,973 | INFO     | 
[2025-11-25 13:46:03] 2025-11-25 18:45:23,974 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 13:46:03] 2025-11-25 18:45:24,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:46:03] 2025-11-25 18:45:24,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,003 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:46:03] 2025-11-25 18:45:24,003 | INFO     | job 6895359063 has completed (purged errors)
[2025-11-25 13:46:03] 2025-11-25 18:45:24,003 | INFO     | overall cleanup function is called
[2025-11-25 13:46:03] 2025-11-25 18:45:25,018 | INFO     | --- collectZombieJob: --- 10, [2733386]
[2025-11-25 13:46:03] 2025-11-25 18:45:25,019 | INFO     | zombie collector waiting for pid 2733386
[2025-11-25 13:46:03] 2025-11-25 18:45:25,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:46:03] 2025-11-25 18:45:25,019 | INFO     | collected zombie processes
[2025-11-25 13:46:03] 2025-11-25 18:45:25,019 | INFO     | will attempt to kill all subprocesses of pid=2733386
[2025-11-25 13:46:03] 2025-11-25 18:45:25,818 | INFO     | process IDs to be killed: [2733386] (in reverse order)
[2025-11-25 13:46:03] 2025-11-25 18:45:26,036 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:46:03] 2025-11-25 18:45:26,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:46:03] 2025-11-25 18:45:26,063 | INFO     | did not find any defunct processes belonging to 2733386
[2025-11-25 13:46:03] 2025-11-25 18:45:26,089 | INFO     | did not find any defunct processes belonging to 2733386
[2025-11-25 13:46:03] 2025-11-25 18:45:26,091 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:46:03] 2025-11-25 18:45:26,091 | INFO     | ready for new job
[2025-11-25 13:46:03] 2025-11-25 18:45:26,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:46:03] 2025-11-25 18:45:26,135 | INFO     | ***************************************
[2025-11-25 13:46:03] 2025-11-25 18:45:26,135 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:46:03] 2025-11-25 18:45:26,135 | INFO     | ***************************************
[2025-11-25 13:46:03] 2025-11-25 18:45:26,135 | INFO     | 
[2025-11-25 13:46:03] 2025-11-25 18:45:26,177 | INFO     | architecture information:
[2025-11-25 13:46:03] 2025-11-25 18:45:26,187 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:46:03] 2025-11-25 18:45:26,208 | INFO     | cat /etc/os-release:
[2025-11-25 13:46:03] NAME="CentOS Linux"
[2025-11-25 13:46:03] VERSION="7 (Core)"
[2025-11-25 13:46:03] ID="centos"
[2025-11-25 13:46:03] ID_LIKE="rhel fedora"
[2025-11-25 13:46:03] VERSION_ID="7"
[2025-11-25 13:46:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:46:03] ANSI_COLOR="0;31"
[2025-11-25 13:46:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:46:03] HOME_URL="https://www.centos.org/"
[2025-11-25 13:46:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:46:03] 
[2025-11-25 13:46:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:46:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:46:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:46:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:46:03] 
[2025-11-25 13:46:03] 2025-11-25 18:45:26,208 | INFO     | ***************************************
[2025-11-25 13:46:03] 2025-11-25 18:45:26,711 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 13:46:03] 2025-11-25 18:45:26,756 | INFO     | sufficient remaining disk space (67670900736 B)
[2025-11-25 13:46:03] 2025-11-25 18:45:26,756 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:46:03] 2025-11-25 18:45:26,757 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:46:03] 2025-11-25 18:45:26,757 | INFO     | update_server=False
[2025-11-25 13:46:03] 2025-11-25 18:45:26,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:46:03] 2025-11-25 18:45:27,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:46:03] 2025-11-25 18:45:27,200 | INFO     | aborting loop
[2025-11-25 13:46:03] 2025-11-25 18:45:27,300 | INFO     | all job control threads have been joined
[2025-11-25 13:46:03] 2025-11-25 18:45:27,368 | INFO     | all data control threads have been joined
[2025-11-25 13:46:03] 2025-11-25 18:45:27,724 | INFO     | all payload control threads have been joined
[2025-11-25 13:46:03] 2025-11-25 18:45:27,763 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:27,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:46:03] 2025-11-25 18:45:27,908 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,160 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,171 | INFO     | [job] validate thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,205 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,242 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,315 | INFO     | [job] control thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,375 | INFO     | [data] control thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,427 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,715 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,731 | INFO     | [payload] control thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,989 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:28,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:46:03] 2025-11-25 18:45:29,868 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:29,995 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:30,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:46:03] 2025-11-25 18:45:34,009 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:46:03] 2025-11-25 18:45:54,953 | INFO     | 77573s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 13:46:03] 2025-11-25 18:45:56,275 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:46:03] 2025-11-25 18:45:56,841 | INFO     | PID=2723195 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:46:03] 2025-11-25 18:45:56,841 | INFO     | .. there are 46 such processes running
[2025-11-25 13:46:03] 2025-11-25 18:45:56,841 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:46:03] 2025-11-25 18:45:56,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:46:03] 2025-11-25 18:45:56,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:46:03] 2025-11-25 18:45:58,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956022581056)>', '<ExcThread(monitor, started 139955225470720)>']
[2025-11-25 13:46:03] 2025-11-25 18:45:58,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:46:03] 2025-11-25 18:45:58,854 | INFO     | [monitor] control thread has ended
[2025-11-25 13:46:03] 2025-11-25 18:46:03,064 | INFO     | all workflow threads have been joined
[2025-11-25 13:46:03] 2025-11-25 18:46:03,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:46:03] 2025-11-25 18:46:03,065 | INFO     | traces error code: 0
[2025-11-25 13:46:03] 2025-11-25 18:46:03,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:46:03] 2025-11-25 18:46:03,304 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:46:03] 2025-11-25 18:46:03,309 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:46:03] 2025-11-25 18:46:03,321 [wrapper] pilotpid: 2723195
[2025-11-25 13:46:03] 2025-11-25 18:46:03,349 [wrapper] Pilot exit status: 0
[2025-11-25 13:46:03] 2025-11-25 18:46:03,372 [wrapper] pandaids: 6895359063
[2025-11-25 13:46:03] 2025-11-25 18:46:03,503 [wrapper] cleanup supervisor_pilot   20156 2723196
[2025-11-25 13:46:03] 2025-11-25 18:46:03,506 [wrapper] Test setup, not cleaning
[2025-11-25 13:46:03] 2025-11-25 18:46:03,509 [wrapper] apfmon messages muted
[2025-11-25 13:46:03] 2025-11-25 18:46:03,512 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:46:03] 2025-11-25 18:46:03,515 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:46:03]  *** Error codes and diagnostics ***
[2025-11-25 13:46:03]     "exeErrorCode": 0,
[2025-11-25 13:46:03]     "exeErrorDiag": "",
[2025-11-25 13:46:03]     "pilotErrorCode": 0,
[2025-11-25 13:46:03]     "pilotErrorDiag": "",
[2025-11-25 13:46:03]  *** Listing of results directory ***
[2025-11-25 13:46:03] total 1329060
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 08:09 pilot3.tar.gz
[2025-11-25 13:46:03] -rwx------. 1 boincer umatlas     36292 Nov 23 08:15 runpilot2-wrapper.sh
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 08:15 queuedata.json
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas       100 Nov 24 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:46:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 16:12 run_atlas
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas       105 Nov 24 16:12 job.xml
[2025-11-25 13:46:03] -rw-r--r--. 2 boincer umatlas 410220995 Nov 24 16:12 EVNT.47483658._000744.pool.root.1
[2025-11-25 13:46:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:12 start_atlas.sh
[2025-11-25 13:46:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 16:12 shared
[2025-11-25 13:46:03] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 16:12 input.tar.gz
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas         0 Nov 24 16:12 boinc_lockfile
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 16:12 pandaJob.out
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas        57 Nov 24 16:12 setup.sh.local
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas    991801 Nov 24 16:12 agis_schedconf.cvmfs.json
[2025-11-25 13:46:03] drwx------. 5 boincer umatlas      4096 Nov 24 16:12 pilot3
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas       533 Nov 25 13:37 boinc_task_state.xml
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas      6946 Nov 25 13:37 init_data.xml
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas 924142403 Nov 25 13:44 HITS.47556137._007396.pool.root.1
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas      1074 Nov 25 13:45 memory_monitor_summary.json
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas   1516240 Nov 25 13:45 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas   2278212 Nov 25 13:45 log.47556137._007396.job.log.tgz.1
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas        95 Nov 25 13:45 pilot_heartbeat.json
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas      8638 Nov 25 13:45 heartbeat.json
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 13:45 boinc_mmap_file
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas        29 Nov 25 13:46 wrapper_checkpoint.txt
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas      4940 Nov 25 13:46 pilotlog.txt
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas   9053821 Nov 25 13:46 log.47556137._007396.job.log.1
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas       353 Nov 25 13:46 output.list
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas       620 Nov 25 13:46 runtime_log
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas  11356160 Nov 25 13:46 result.tar.gz
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 13:46 runtime_log.err
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas       665 Nov 25 13:46 p74NDm66Oh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVvKKDmzNtksn.diag
[2025-11-25 13:46:03] -rw-r--r--. 1 boincer umatlas     21765 Nov 25 13:46 stderr.txt
[2025-11-25 13:46:03] HITS file was successfully produced:
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas 924142403 Nov 25 13:44 shared/HITS.pool.root.1
[2025-11-25 13:46:03]  *** Contents of shared directory: ***
[2025-11-25 13:46:03] total 1314788
[2025-11-25 13:46:03] -rw-r--r--. 2 boincer umatlas 410220995 Nov 24 16:12 ATLAS.root_0
[2025-11-25 13:46:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:12 start_atlas.sh
[2025-11-25 13:46:03] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 16:12 input.tar.gz
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas 924142403 Nov 25 13:44 HITS.pool.root.1
[2025-11-25 13:46:03] -rw-------. 1 boincer umatlas  11356160 Nov 25 13:46 result.tar.gz
13:46:05 (2719022): run_atlas exited; CPU time 209985.103258
13:46:05 (2719022): called boinc_finish(0)

</stderr_txt>
]]>

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