Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:50:57 (3313469): wrapper (7.7.26015): starting
20:50:57 (3313469): wrapper: running run_atlas (--nthreads 2)
[2025-11-27 20:50:57] Arguments: --nthreads 2
[2025-11-27 20:50:57] Threads: 2
[2025-11-27 20:50:57] Checking for CVMFS
[2025-11-27 20:50:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:50:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:50:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:50:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:50:57] 2.9.2.0 1624889 12949 57676 153383 2 81 20794887 36864001 0 130560 1 4121404 99.929 643624 1035 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 20:50:57] CVMFS is ok
[2025-11-27 20:50:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:50:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:50:57] Further information can be found at the LHC@home message board.
[2025-11-27 20:50:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:50:57] Checking for apptainer binary...
[2025-11-27 20:50:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:50:57] Running /usr/bin/apptainer --version
[2025-11-27 20:50:57] apptainer version 1.4.1-1.1
[2025-11-27 20:50:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:50:57] thA315
[2025-11-27 20:50:57] apptainer works
[2025-11-27 20:50:57] Set ATHENA_PROC_NUMBER=2
[2025-11-27 20:50:57] Set ATHENA_CORE_NUMBER=2
[2025-11-27 20:50:57] Starting ATLAS job with PandaID=6895360819
[2025-11-27 20:50:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 09:44:22]  *** The last 200 lines of the pilot log: ***
[2025-11-28 09:44:22] 2025-11-28 08:43:36,124 | INFO     | zombie collector waiting for pid 3323610
[2025-11-28 09:44:22] 2025-11-28 08:43:36,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 09:44:22] 2025-11-28 08:43:36,124 | INFO     | collected zombie processes
[2025-11-28 09:44:22] 2025-11-28 08:43:36,125 | INFO     | will attempt to kill all subprocesses of pid=3323610
[2025-11-28 09:44:22] 2025-11-28 08:43:36,162 | INFO     | process IDs to be killed: [3323610] (in reverse order)
[2025-11-28 09:44:22] 2025-11-28 08:43:36,184 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 09:44:22] 2025-11-28 08:43:36,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 09:44:22] 2025-11-28 08:43:36,185 | INFO     | did not find any defunct processes belonging to 3323610
[2025-11-28 09:44:22] 2025-11-28 08:43:36,186 | INFO     | did not find any defunct processes belonging to 3323610
[2025-11-28 09:44:22] 2025-11-28 08:43:36,186 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 09:44:22] 2025-11-28 08:43:36,186 | INFO     | ready for new job
[2025-11-28 09:44:22] 2025-11-28 08:43:36,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 09:44:22] 2025-11-28 08:43:36,188 | INFO     | ***************************************
[2025-11-28 09:44:22] 2025-11-28 08:43:36,188 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 09:44:22] 2025-11-28 08:43:36,188 | INFO     | ***************************************
[2025-11-28 09:44:22] 2025-11-28 08:43:36,188 | INFO     | 
[2025-11-28 09:44:22] 2025-11-28 08:43:36,188 | INFO     | architecture information:
[2025-11-28 09:44:22] 2025-11-28 08:43:36,188 | INFO     | executing command: cat /etc/os-release
[2025-11-28 09:44:22] 2025-11-28 08:43:36,197 | INFO     | cat /etc/os-release:
[2025-11-28 09:44:22] NAME="CentOS Linux"
[2025-11-28 09:44:22] VERSION="7 (Core)"
[2025-11-28 09:44:22] ID="centos"
[2025-11-28 09:44:22] ID_LIKE="rhel fedora"
[2025-11-28 09:44:22] VERSION_ID="7"
[2025-11-28 09:44:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 09:44:22] ANSI_COLOR="0;31"
[2025-11-28 09:44:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 09:44:22] HOME_URL="https://www.centos.org/"
[2025-11-28 09:44:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 09:44:22] 
[2025-11-28 09:44:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 09:44:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 09:44:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 09:44:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 09:44:22] 
[2025-11-28 09:44:22] 2025-11-28 08:43:36,197 | INFO     | ***************************************
[2025-11-28 09:44:22] 2025-11-28 08:43:36,700 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-28 09:44:22] 2025-11-28 08:43:36,712 | INFO     | sufficient remaining disk space (501314748416 B)
[2025-11-28 09:44:22] 2025-11-28 08:43:36,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 09:44:22] 2025-11-28 08:43:36,713 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 09:44:22] 2025-11-28 08:43:36,713 | INFO     | update_server=False
[2025-11-28 09:44:22] 2025-11-28 08:43:36,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 09:44:22] 2025-11-28 08:43:36,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:44:22] 2025-11-28 08:43:37,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 09:44:22] 2025-11-28 08:43:37,099 | INFO     | all data control threads have been joined
[2025-11-28 09:44:22] 2025-11-28 08:43:37,142 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 09:44:22] 2025-11-28 08:43:37,142 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 09:44:22] 2025-11-28 08:43:37,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 09:44:22] 2025-11-28 08:43:37,143 | INFO     | will abort loop
[2025-11-28 09:44:22] 2025-11-28 08:43:37,209 | INFO     | all payload control threads have been joined
[2025-11-28 09:44:22] 2025-11-28 08:43:37,308 | INFO     | all job control threads have been joined
[2025-11-28 09:44:22] 2025-11-28 08:43:37,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 09:44:22] 2025-11-28 08:43:37,714 | INFO     | [job] queue monitor thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:37,718 | INFO     | [job] retrieve thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:37,732 | INFO     | [payload] failed_post thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:37,762 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:37,867 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,105 | INFO     | [data] control thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,148 | INFO     | [job] job monitor thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,214 | INFO     | [payload] control thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,314 | INFO     | [job] control thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,379 | INFO     | [data] copytool_in thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,807 | INFO     | [payload] validate_post thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,840 | INFO     | [job] validate thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:38,922 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:39,406 | INFO     | [data] copytool_out thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:41,017 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:43:47,601 | INFO     | job.realtimelogging is not enabled
[2025-11-28 09:44:22] 2025-11-28 08:43:48,603 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 09:44:22] 2025-11-28 08:44:07,365 | INFO     | PID=3317183 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 09:44:22] 2025-11-28 08:44:07,366 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 09:44:22] 2025-11-28 08:44:07,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 09:44:22] 2025-11-28 08:44:07,366 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 09:44:22] 2025-11-28 08:44:16,699 | INFO     | [monitor] cgroup control has ended
[2025-11-28 09:44:22] 2025-11-28 08:44:17,107 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714675967808)>', '<ExcThread(monitor, started 140713798924032)>']
[2025-11-28 09:44:22] 2025-11-28 08:44:17,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 09:44:22] 2025-11-28 08:44:17,410 | INFO     | [monitor] control thread has ended
[2025-11-28 09:44:22] 2025-11-28 08:44:22,133 | INFO     | all workflow threads have been joined
[2025-11-28 09:44:22] 2025-11-28 08:44:22,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 09:44:22] 2025-11-28 08:44:22,135 | INFO     | traces error code: 0
[2025-11-28 09:44:22] 2025-11-28 08:44:22,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 09:44:22] 2025-11-28 08:44:22,211 [wrapper] ==== pilot stdout END ====
[2025-11-28 09:44:22] 2025-11-28 08:44:22,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 09:44:22] 2025-11-28 08:44:22,217 [wrapper] pilotpid: 3317183
[2025-11-28 09:44:22] 2025-11-28 08:44:22,219 [wrapper] Pilot exit status: 0
[2025-11-28 09:44:22] 2025-11-28 08:44:22,225 [wrapper] pandaids: 6895360819
[2025-11-28 09:44:22] 2025-11-28 08:44:22,239 [wrapper] cleanup supervisor_pilot 3410478 3317184
[2025-11-28 09:44:22] 2025-11-28 08:44:22,241 [wrapper] Test setup, not cleaning
[2025-11-28 09:44:22] 2025-11-28 08:44:22,243 [wrapper] apfmon messages muted
[2025-11-28 09:44:22] 2025-11-28 08:44:22,245 [wrapper] ==== wrapper stdout END ====
[2025-11-28 09:44:22] 2025-11-28 08:44:22,247 [wrapper] ==== wrapper stderr END ====
[2025-11-28 09:44:22]  *** Error codes and diagnostics ***
[2025-11-28 09:44:22]     "exeErrorCode": 0,
[2025-11-28 09:44:22]     "exeErrorDiag": "",
[2025-11-28 09:44:22]     "pilotErrorCode": 0,
[2025-11-28 09:44:22]     "pilotErrorDiag": "",
[2025-11-28 09:44:22]  *** Listing of results directory ***
[2025-11-28 09:44:22] total 1322136
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc    576529 Nov 23 14:42 pilot3.tar.gz
[2025-11-28 09:44:22] -rwx------ 1 boinc boinc     36292 Nov 23 14:56 runpilot2-wrapper.sh
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc      5112 Nov 23 14:56 queuedata.json
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc       100 Nov 27 20:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 09:44:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 20:50 run_atlas
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc       105 Nov 27 20:50 job.xml
[2025-11-28 09:44:22] -rw-r--r-- 2 boinc boinc 410623299 Nov 27 20:50 EVNT.47483658._000755.pool.root.1
[2025-11-28 09:44:22] -rw-r--r-- 2 boinc boinc    590095 Nov 27 20:50 input.tar.gz
[2025-11-28 09:44:22] -rw-r--r-- 2 boinc boinc     15847 Nov 27 20:50 start_atlas.sh
[2025-11-28 09:44:22] drwxrwx--x 2 boinc boinc      4096 Nov 27 20:50 shared
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc         0 Nov 27 20:50 boinc_setup_complete
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc      6207 Nov 27 20:50 init_data.xml
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc         0 Nov 27 20:50 boinc_lockfile
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc      2786 Nov 27 20:50 pandaJob.out
[2025-11-28 09:44:22] -rw------- 1 boinc boinc    991191 Nov 27 20:51 agis_schedconf.cvmfs.json
[2025-11-28 09:44:22] drwx------ 5 boinc boinc      4096 Nov 27 20:51 pilot3
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc       531 Nov 28 09:39 boinc_task_state.xml
[2025-11-28 09:44:22] -rw------- 1 boinc boinc 923850769 Nov 28 09:43 HITS.47556137._007509.pool.root.1
[2025-11-28 09:44:22] -rw------- 1 boinc boinc      1023 Nov 28 09:43 memory_monitor_summary.json
[2025-11-28 09:44:22] -rw------- 1 boinc boinc   1516240 Nov 28 09:43 agis_ddmendpoints.agis.ALL.json
[2025-11-28 09:44:22] -rw------- 1 boinc boinc   1249724 Nov 28 09:43 log.47556137._007509.job.log.tgz.1
[2025-11-28 09:44:22] -rw------- 1 boinc boinc      8572 Nov 28 09:43 heartbeat.json
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc        28 Nov 28 09:43 wrapper_checkpoint.txt
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc      8192 Nov 28 09:43 boinc_mmap_file
[2025-11-28 09:44:22] -rw------- 1 boinc boinc        95 Nov 28 09:44 pilot_heartbeat.json
[2025-11-28 09:44:22] -rw------- 1 boinc boinc      5010 Nov 28 09:44 pilotlog.txt
[2025-11-28 09:44:22] -rw------- 1 boinc boinc   6496340 Nov 28 09:44 log.47556137._007509.job.log.1
[2025-11-28 09:44:22] -rw------- 1 boinc boinc       353 Nov 28 09:44 output.list
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc       620 Nov 28 09:44 runtime_log
[2025-11-28 09:44:22] -rw------- 1 boinc boinc   7761920 Nov 28 09:44 result.tar.gz
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc      8898 Nov 28 09:44 runtime_log.err
[2025-11-28 09:44:22] -rw------- 1 boinc boinc       665 Nov 28 09:44 GxINDmVkPh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8wKKDmLzjgpm.diag
[2025-11-28 09:44:22] -rw-r--r-- 1 boinc boinc     11063 Nov 28 09:44 stderr.txt
[2025-11-28 09:44:22] HITS file was successfully produced:
[2025-11-28 09:44:22] -rw------- 1 boinc boinc 923850769 Nov 28 09:43 shared/HITS.pool.root.1
[2025-11-28 09:44:22]  *** Contents of shared directory: ***
[2025-11-28 09:44:22] total 1311384
[2025-11-28 09:44:22] -rw-r--r-- 2 boinc boinc 410623299 Nov 27 20:50 ATLAS.root_0
[2025-11-28 09:44:22] -rw-r--r-- 2 boinc boinc    590095 Nov 27 20:50 input.tar.gz
[2025-11-28 09:44:22] -rw-r--r-- 2 boinc boinc     15847 Nov 27 20:50 start_atlas.sh
[2025-11-28 09:44:22] -rw------- 1 boinc boinc 923850769 Nov 28 09:43 HITS.pool.root.1
[2025-11-28 09:44:22] -rw------- 1 boinc boinc   7761920 Nov 28 09:44 result.tar.gz
09:44:24 (3313469): run_atlas exited; CPU time 91940.673648
09:44:24 (3313469): called boinc_finish(0)

</stderr_txt>
]]>

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