Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:37:15 (13163): wrapper (7.7.26015): starting
01:37:15 (13163): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:37:15] Arguments: --nthreads 8
[2025-11-27 01:37:15] Threads: 8
[2025-11-27 01:37:15] Checking for CVMFS
[2025-11-27 01:37:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:37:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:37:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:37:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:37:18] 2.11.2.0 15591 89396 100140 153341 0 85 24354251 25165824 1338 130560 11 25787447 99.877 14082155 1764 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:37:18] CVMFS is ok
[2025-11-27 01:37:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:37:18] Checking for apptainer binary...
[2025-11-27 01:37:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:37:18] Running /usr/bin/apptainer --version
[2025-11-27 01:37:18] apptainer version 1.3.2-1.el7
[2025-11-27 01:37:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:37:30] cg-vwn260.simple-grid.lan
[2025-11-27 01:37:30] apptainer works
[2025-11-27 01:37:30] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:37:30] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:37:30] Starting ATLAS job with PandaID=6895374238
[2025-11-27 01:37:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:04:22]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:04:22] 2025-11-28 00:03:34,594 | INFO     | time since job start (84118s) is within the limit (172800.0s)
[2025-11-28 01:04:22] 2025-11-28 00:03:35,981 | INFO     | monitor loop #5669: job 0:6895374238 is in state 'finished'
[2025-11-28 01:04:22] 2025-11-28 00:03:35,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:04:22] 2025-11-28 00:03:36,601 | INFO     | time since job start (84120s) is within the limit (172800.0s)
[2025-11-28 01:04:22] 2025-11-28 00:03:38,495 | INFO     | monitor loop #5670: job 0:6895374238 is in state 'finished'
[2025-11-28 01:04:22] 2025-11-28 00:03:38,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:04:22] 2025-11-28 00:03:38,607 | INFO     | time since job start (84122s) is within the limit (172800.0s)
[2025-11-28 01:04:22] 2025-11-28 00:03:40,616 | INFO     | time since job start (84124s) is within the limit (172800.0s)
[2025-11-28 01:04:22] 2025-11-28 00:03:41,000 | INFO     | monitor loop #5671: job 0:6895374238 is in state 'finished'
[2025-11-28 01:04:22] 2025-11-28 00:03:41,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:04:22] 2025-11-28 00:03:42,623 | INFO     | time since job start (84126s) is within the limit (172800.0s)
[2025-11-28 01:04:22] 2025-11-28 00:03:43,507 | INFO     | monitor loop #5672: job 0:6895374238 is in state 'finished'
[2025-11-28 01:04:22] 2025-11-28 00:03:43,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:04:22] 2025-11-28 00:03:43,814 | INFO     | PID=16930 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 01:04:22] 2025-11-28 00:03:43,814 | INFO     | .. there are 9 such processes running
[2025-11-28 01:04:22] 2025-11-28 00:03:44,815 | INFO     | time since job start (84128s) is within the limit (172800.0s)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,437 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 01:04:22] 2025-11-28 00:03:45,438 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 01:04:22] 2025-11-28 00:03:45,440 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895374238/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,441 | INFO     | extracted standard info from prmon json
[2025-11-28 01:04:22] 2025-11-28 00:03:45,441 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:04:22] 2025-11-28 00:03:45,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:04:22] 2025-11-28 00:03:45,473 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:04:22] 2025-11-28 00:03:45,475 | INFO     | sum of square deviations: 795588676521.479
[2025-11-28 01:04:22] 2025-11-28 00:03:45,564 | INFO     | sum of deviations: 3419484558168.1226
[2025-11-28 01:04:22] 2025-11-28 00:03:45,564 | INFO     | mean x: 1764246347.0788896
[2025-11-28 01:04:22] 2025-11-28 00:03:45,564 | INFO     | mean y: 2841210.637691746
[2025-11-28 01:04:22] 2025-11-28 00:03:45,564 | INFO     | intersect: -7579988106.41319
[2025-11-28 01:04:22] 2025-11-28 00:03:45,566 | INFO     | chi2: 22.429360822591548
[2025-11-28 01:04:22] 2025-11-28 00:03:45,568 | INFO     | sum of square deviations: 786903736245.6385
[2025-11-28 01:04:22] 2025-11-28 00:03:45,665 | INFO     | sum of deviations: 3869976755312.5996
[2025-11-28 01:04:22] 2025-11-28 00:03:45,665 | INFO     | mean x: 1764246194.5828445
[2025-11-28 01:04:22] 2025-11-28 00:03:45,665 | INFO     | mean y: 2849119.906158358
[2025-11-28 01:04:22] 2025-11-28 00:03:45,665 | INFO     | intersect: -8673678197.474667
[2025-11-28 01:04:22] 2025-11-28 00:03:45,667 | INFO     | chi2: 19.270827006934205
[2025-11-28 01:04:22] 2025-11-28 00:03:45,667 | INFO     | current chi2=19.270827006934205 (change=14.082139213151226 %)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,667 | INFO     | right removable region: 1363
[2025-11-28 01:04:22] 2025-11-28 00:03:45,669 | INFO     | sum of square deviations: 786902835275.638
[2025-11-28 01:04:22] 2025-11-28 00:03:45,751 | INFO     | sum of deviations: 2842832635122.7827
[2025-11-28 01:04:22] 2025-11-28 00:03:45,752 | INFO     | mean x: 1764246499.5828445
[2025-11-28 01:04:22] 2025-11-28 00:03:45,752 | INFO     | mean y: 2851334.7939882698
[2025-11-28 01:04:22] 2025-11-28 00:03:45,752 | INFO     | intersect: -6370816798.779859
[2025-11-28 01:04:22] 2025-11-28 00:03:45,754 | INFO     | chi2: 17.649452266959464
[2025-11-28 01:04:22] 2025-11-28 00:03:45,754 | INFO     | current chi2=17.649452266959464 (change=21.310944138977028 %)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,754 | INFO     | left removable region: 10
[2025-11-28 01:04:22] 2025-11-28 00:03:45,756 | INFO     | sum of square deviations: 768018057786.6322
[2025-11-28 01:04:22] 2025-11-28 00:03:45,853 | INFO     | sum of deviations: 2900380469658.1484
[2025-11-28 01:04:22] 2025-11-28 00:03:45,853 | INFO     | mean x: 1764246469.091648
[2025-11-28 01:04:22] 2025-11-28 00:03:45,853 | INFO     | mean y: 2869920.216555802
[2025-11-28 01:04:22] 2025-11-28 00:03:45,854 | INFO     | intersect: -6659715615.029213
[2025-11-28 01:04:22] 2025-11-28 00:03:45,862 | INFO     | chi2: 10.269975991291238
[2025-11-28 01:04:22] 2025-11-28 00:03:45,863 | INFO     | current memory leak: 3.78 B/s (using 1353 data points, chi2=10.27)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | ..............................
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | . Timing measurements:
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | . get job = 0 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | . initial setup = 8 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | . payload setup = 162 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | . stage-in = 0 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,865 | INFO     | . payload execution = 83649 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,866 | INFO     | . stage-out = 5 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,866 | INFO     | . log creation = 1 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,866 | INFO     | ..............................
[2025-11-28 01:04:22] 2025-11-28 00:03:45,996 | INFO     | 
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | job summary report
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | --------------------------------------------------
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | PanDA job id: 6895374238
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | task id: 47556137
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | errors: (none)
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | pilot state: finished 
[2025-11-28 01:04:22] 2025-11-28 00:03:45,997 | INFO     | transexitcode: 0
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | exeerrorcode: 0
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | exeerrordiag: 
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | exitcode: 0
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | exitmsg: OK
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | cpuconsumptiontime: 315596 s
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | nevents: 1000
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | neventsw: 0
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | pid: 23504
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | pgrp: 23504
[2025-11-28 01:04:22] 2025-11-28 00:03:45,998 | INFO     | corecount: 8
[2025-11-28 01:04:22] 2025-11-28 00:03:45,999 | INFO     | event service: False
[2025-11-28 01:04:22] 2025-11-28 00:03:45,999 | INFO     | sizes: {0: 2284087, 1: 2284171, 2: 2284370, 12: 2284370, 23: 2284398, 34: 2284426, 45: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 88: 2284722, 98: 2285030, 10
[2025-11-28 01:04:22] 2025-11-28 00:03:45,999 | INFO     | --------------------------------------------------
[2025-11-28 01:04:22] 2025-11-28 00:03:45,999 | INFO     | 
[2025-11-28 01:04:22] 2025-11-28 00:03:45,999 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-28 01:04:22] 2025-11-28 00:03:46,300 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,301 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,302 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:04:22] 2025-11-28 00:03:46,303 | INFO     | job 6895374238 has completed (purged errors)
[2025-11-28 01:04:22] 2025-11-28 00:03:46,303 | INFO     | overall cleanup function is called
[2025-11-28 01:04:22] 2025-11-28 00:03:47,318 | INFO     | --- collectZombieJob: --- 10, [23504]
[2025-11-28 01:04:22] 2025-11-28 00:03:47,319 | INFO     | zombie collector waiting for pid 23504
[2025-11-28 01:04:22] 2025-11-28 00:03:47,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:04:22] 2025-11-28 00:03:47,319 | INFO     | collected zombie processes
[2025-11-28 01:04:22] 2025-11-28 00:03:47,319 | INFO     | will attempt to kill all subprocesses of pid=23504
[2025-11-28 01:04:22] 2025-11-28 00:03:47,429 | INFO     | process IDs to be killed: [23504] (in reverse order)
[2025-11-28 01:04:22] 2025-11-28 00:03:48,273 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:04:22] 2025-11-28 00:03:48,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:04:22] 2025-11-28 00:03:48,276 | INFO     | did not find any defunct processes belonging to 23504
[2025-11-28 01:04:22] 2025-11-28 00:03:48,278 | INFO     | did not find any defunct processes belonging to 23504
[2025-11-28 01:04:22] 2025-11-28 00:03:48,346 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:04:22] 2025-11-28 00:03:48,347 | INFO     | ready for new job
[2025-11-28 01:04:22] 2025-11-28 00:03:48,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:04:22] 2025-11-28 00:03:48,352 | INFO     | ***************************************
[2025-11-28 01:04:22] 2025-11-28 00:03:48,352 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:04:22] 2025-11-28 00:03:48,352 | INFO     | ***************************************
[2025-11-28 01:04:22] 2025-11-28 00:03:48,352 | INFO     | 
[2025-11-28 01:04:22] 2025-11-28 00:03:48,353 | INFO     | pilot is running in a VM
[2025-11-28 01:04:22] 2025-11-28 00:03:48,353 | INFO     | architecture information:
[2025-11-28 01:04:22] 2025-11-28 00:03:48,366 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:04:22] 2025-11-28 00:03:48,571 | INFO     | cat /etc/os-release:
[2025-11-28 01:04:22] NAME="CentOS Linux"
[2025-11-28 01:04:22] VERSION="7 (Core)"
[2025-11-28 01:04:22] ID="centos"
[2025-11-28 01:04:22] ID_LIKE="rhel fedora"
[2025-11-28 01:04:22] VERSION_ID="7"
[2025-11-28 01:04:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:04:22] ANSI_COLOR="0;31"
[2025-11-28 01:04:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:04:22] HOME_URL="https://www.centos.org/"
[2025-11-28 01:04:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:04:22] 
[2025-11-28 01:04:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:04:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:04:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:04:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:04:22] 
[2025-11-28 01:04:22] 2025-11-28 00:03:48,571 | INFO     | ***************************************
[2025-11-28 01:04:22] 2025-11-28 00:03:49,074 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-28 01:04:22] 2025-11-28 00:03:49,241 | INFO     | sufficient remaining disk space (495454257152 B)
[2025-11-28 01:04:22] 2025-11-28 00:03:49,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:04:22] 2025-11-28 00:03:49,241 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:04:22] 2025-11-28 00:03:49,241 | INFO     | update_server=False
[2025-11-28 01:04:22] 2025-11-28 00:03:49,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:04:22] 2025-11-28 00:03:49,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:04:22] 2025-11-28 00:03:49,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:04:22] 2025-11-28 00:03:49,574 | INFO     | aborting loop
[2025-11-28 01:04:22] 2025-11-28 00:03:49,908 | INFO     | all payload control threads have been joined
[2025-11-28 01:04:22] 2025-11-28 00:03:50,040 | INFO     | all job control threads have been joined
[2025-11-28 01:04:22] 2025-11-28 00:03:50,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:04:22] 2025-11-28 00:03:50,216 | INFO     | all data control threads have been joined
[2025-11-28 01:04:22] 2025-11-28 00:03:50,247 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,299 | INFO     | [job] validate thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,385 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,579 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,746 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,912 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:50,915 | INFO     | [payload] control thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:51,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:04:22] 2025-11-28 00:03:51,046 | INFO     | [job] control thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:51,187 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:51,222 | INFO     | [data] control thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:51,250 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:51,321 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:51,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:52,018 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:03:54,199 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:04:22] 2025-11-28 00:04:02,949 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:04:22] 2025-11-28 00:04:03,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701585995584)>', '<ExcThread(monitor, started 140701140494080)>']
[2025-11-28 01:04:22] 2025-11-28 00:04:08,360 | INFO     | all workflow threads have been joined
[2025-11-28 01:04:22] 2025-11-28 00:04:08,361 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:04:22] 2025-11-28 00:04:08,361 | INFO     | traces error code: 0
[2025-11-28 01:04:22] 2025-11-28 00:04:08,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:04:22] 2025-11-28 00:04:18,095 | INFO     | PID=16930 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 01:04:22] 2025-11-28 00:04:18,095 | INFO     | .. there are 9 such processes running
[2025-11-28 01:04:22] 2025-11-28 00:04:18,102 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:04:22] 2025-11-28 00:04:18,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:04:22] 2025-11-28 00:04:18,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:04:22] 2025-11-28 00:04:18,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:04:22] 2025-11-28 00:04:18,103 | INFO     | [monitor] control thread has ended
[2025-11-28 01:04:22] 2025-11-28 00:04:18,395 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:04:22] 2025-11-28 00:04:18,485 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:04:22] 2025-11-28 00:04:18,530 [wrapper] pilotpid: 16930
[2025-11-28 01:04:22] 2025-11-28 00:04:18,577 [wrapper] Pilot exit status: 0
[2025-11-28 01:04:22] 2025-11-28 00:04:19,002 [wrapper] pandaids: 6895374238
[2025-11-28 01:04:22] 2025-11-28 00:04:19,361 [wrapper] cleanup supervisor_pilot 26844 16931
[2025-11-28 01:04:22] 2025-11-28 00:04:19,481 [wrapper] Test setup, not cleaning
[2025-11-28 01:04:22] 2025-11-28 00:04:19,599 [wrapper] apfmon messages muted
[2025-11-28 01:04:22] 2025-11-28 00:04:19,687 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:04:22] 2025-11-28 00:04:19,816 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:04:22]  *** Error codes and diagnostics ***
[2025-11-28 01:04:23]     "exeErrorCode": 0,
[2025-11-28 01:04:23]     "exeErrorDiag": "",
[2025-11-28 01:04:23]     "pilotErrorCode": 0,
[2025-11-28 01:04:23]     "pilotErrorDiag": "",
[2025-11-28 01:04:23]  *** Listing of results directory ***
[2025-11-28 01:04:23] total 1330360
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc    576529 Nov 23 23:35 pilot3.tar.gz
[2025-11-28 01:04:23] -rwx------. 1 boinc boinc     36292 Nov 23 23:48 runpilot2-wrapper.sh
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc      5112 Nov 23 23:48 queuedata.json
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:04:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:37 run_atlas
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:37 job.xml
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc      6392 Nov 27 01:37 init_data.xml
[2025-11-28 01:04:23] -rw-r--r--. 2 boinc boinc 409789323 Nov 27 01:37 EVNT.47483658._000933.pool.root.1
[2025-11-28 01:04:23] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:37 start_atlas.sh
[2025-11-28 01:04:23] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:37 shared
[2025-11-28 01:04:23] -rw-r--r--. 2 boinc boinc    590102 Nov 27 01:37 input.tar.gz
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:37 boinc_lockfile
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc      2785 Nov 27 01:37 pandaJob.out
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc    991546 Nov 27 01:41 agis_schedconf.cvmfs.json
[2025-11-28 01:04:23] drwx------. 5 boinc boinc      4096 Nov 27 01:41 pilot3
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:41 boinc_task_state.xml
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc 921203166 Nov 28 01:00 HITS.47556137._009196.pool.root.1
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc      1029 Nov 28 01:01 memory_monitor_summary.json
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc   1516240 Nov 28 01:01 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc   2470530 Nov 28 01:02 log.47556137._009196.job.log.tgz.1
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc      8627 Nov 28 01:03 heartbeat.json
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc        29 Nov 28 01:04 wrapper_checkpoint.txt
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc      8192 Nov 28 01:04 boinc_mmap_file
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc        95 Nov 28 01:04 pilot_heartbeat.json
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc       820 Nov 28 01:04 pilotlog.txt
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc  11225938 Nov 28 01:04 log.47556137._009196.job.log.1
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc       353 Nov 28 01:04 output.list
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc       620 Nov 28 01:04 runtime_log
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc  13711360 Nov 28 01:04 result.tar.gz
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc       662 Nov 28 01:04 TuwNDms3Xh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGGLKDmypYjFn.diag
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc      8817 Nov 28 01:04 runtime_log.err
[2025-11-28 01:04:23] -rw-r--r--. 1 boinc boinc     21503 Nov 28 01:04 stderr.txt
[2025-11-28 01:04:23] HITS file was successfully produced:
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc 921203166 Nov 28 01:00 shared/HITS.pool.root.1
[2025-11-28 01:04:23]  *** Contents of shared directory: ***
[2025-11-28 01:04:23] total 1313792
[2025-11-28 01:04:23] -rw-r--r--. 2 boinc boinc 409789323 Nov 27 01:37 ATLAS.root_0
[2025-11-28 01:04:23] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:37 start_atlas.sh
[2025-11-28 01:04:23] -rw-r--r--. 2 boinc boinc    590102 Nov 27 01:37 input.tar.gz
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc 921203166 Nov 28 01:00 HITS.pool.root.1
[2025-11-28 01:04:23] -rw-------. 1 boinc boinc  13711360 Nov 28 01:04 result.tar.gz
01:04:24 (13163): run_atlas exited; CPU time 316173.897921
01:04:24 (13163): called boinc_finish(0)

</stderr_txt>
]]>

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