Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:15 (1091): wrapper (7.7.26015): starting
01:38:15 (1091): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:38:15] Arguments: --nthreads 8
[2025-11-27 01:38:15] Threads: 8
[2025-11-27 01:38:15] Checking for CVMFS
[2025-11-27 01:38:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:38:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:38:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:38:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:38:17] 2.11.2.0 9405 212087 136148 153341 0 85 25047309 25165825 1288 130560 10 91260310 99.883 44798237 2210 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:38:17] CVMFS is ok
[2025-11-27 01:38:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:38:17] Checking for apptainer binary...
[2025-11-27 01:38:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:38:17] Running /usr/bin/apptainer --version
[2025-11-27 01:38:17] apptainer version 1.3.2-1.el7
[2025-11-27 01:38:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:38:33] cg-vwn431.simple-grid.lan
[2025-11-27 01:38:33] apptainer works
[2025-11-27 01:38:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:38:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:38:34] Starting ATLAS job with PandaID=6895374373
[2025-11-27 01:38:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:26:59]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:26:59] 2025-11-28 00:25:43,694 | INFO     | time since job start (85404s) is within the limit (172800.0s)
[2025-11-28 01:26:59] 2025-11-28 00:25:43,845 | INFO     | monitor loop #5744: job 0:6895374373 is in state 'finished'
[2025-11-28 01:26:59] 2025-11-28 00:25:43,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:26:59] 2025-11-28 00:25:45,701 | INFO     | time since job start (85406s) is within the limit (172800.0s)
[2025-11-28 01:26:59] 2025-11-28 00:25:46,350 | INFO     | monitor loop #5745: job 0:6895374373 is in state 'finished'
[2025-11-28 01:26:59] 2025-11-28 00:25:46,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:26:59] 2025-11-28 00:25:47,708 | INFO     | time since job start (85408s) is within the limit (172800.0s)
[2025-11-28 01:26:59] 2025-11-28 00:25:48,859 | INFO     | monitor loop #5746: job 0:6895374373 is in state 'finished'
[2025-11-28 01:26:59] 2025-11-28 00:25:48,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:26:59] 2025-11-28 00:25:49,717 | INFO     | time since job start (85410s) is within the limit (172800.0s)
[2025-11-28 01:26:59] 2025-11-28 00:25:50,906 | INFO     | PID=4882 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 01:26:59] 2025-11-28 00:25:50,906 | INFO     | .. there are 9 such processes running
[2025-11-28 01:26:59] 2025-11-28 00:25:51,368 | INFO     | monitor loop #5747: job 0:6895374373 is in state 'finished'
[2025-11-28 01:26:59] 2025-11-28 00:25:51,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:26:59] 2025-11-28 00:25:51,907 | INFO     | time since job start (85412s) is within the limit (172800.0s)
[2025-11-28 01:26:59] 2025-11-28 00:25:52,974 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 01:26:59] 2025-11-28 00:25:52,975 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 01:26:59] 2025-11-28 00:25:52,977 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6895374373/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:26:59] 2025-11-28 00:25:52,978 | INFO     | extracted standard info from prmon json
[2025-11-28 01:26:59] 2025-11-28 00:25:52,978 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:26:59] 2025-11-28 00:25:52,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:26:59] 2025-11-28 00:25:53,018 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:26:59] 2025-11-28 00:25:53,021 | INFO     | sum of square deviations: 832763540305.8003
[2025-11-28 01:26:59] 2025-11-28 00:25:53,133 | INFO     | sum of deviations: 2580973533946.9395
[2025-11-28 01:26:59] 2025-11-28 00:25:53,133 | INFO     | mean x: 1764247026.5640287
[2025-11-28 01:26:59] 2025-11-28 00:25:53,133 | INFO     | mean y: 2826616.9388489206
[2025-11-28 01:26:59] 2025-11-28 00:25:53,134 | INFO     | intersect: -5465081933.949743
[2025-11-28 01:26:59] 2025-11-28 00:25:53,135 | INFO     | chi2: 27.939011707639505
[2025-11-28 01:26:59] 2025-11-28 00:25:53,137 | INFO     | sum of square deviations: 823809600247.621
[2025-11-28 01:26:59] 2025-11-28 00:25:53,203 | INFO     | sum of deviations: 3040226535199.5664
[2025-11-28 01:26:59] 2025-11-28 00:25:53,204 | INFO     | mean x: 1764246874.0678701
[2025-11-28 01:26:59] 2025-11-28 00:25:53,204 | INFO     | mean y: 2834438.015162455
[2025-11-28 01:26:59] 2025-11-28 00:25:53,204 | INFO     | intersect: -6508027003.235099
[2025-11-28 01:26:59] 2025-11-28 00:25:53,206 | INFO     | chi2: 24.627441311760332
[2025-11-28 01:26:59] 2025-11-28 00:25:53,206 | INFO     | current chi2=24.627441311760332 (change=11.852854462184407 %)
[2025-11-28 01:26:59] 2025-11-28 00:25:53,206 | INFO     | right removable region: 1384
[2025-11-28 01:26:59] 2025-11-28 00:25:53,208 | INFO     | sum of square deviations: 823808698057.6216
[2025-11-28 01:26:59] 2025-11-28 00:25:53,277 | INFO     | sum of deviations: 2010240224117.6838
[2025-11-28 01:26:59] 2025-11-28 00:25:53,277 | INFO     | mean x: 1764247179.0678701
[2025-11-28 01:26:59] 2025-11-28 00:25:53,277 | INFO     | mean y: 2836335.9501805054
[2025-11-28 01:26:59] 2025-11-28 00:25:53,277 | INFO     | intersect: -4302241594.16937
[2025-11-28 01:26:59] 2025-11-28 00:25:53,279 | INFO     | chi2: 23.418670925955688
[2025-11-28 01:26:59] 2025-11-28 00:25:53,279 | INFO     | current chi2=23.418670925955688 (change=16.17931524917826 %)
[2025-11-28 01:26:59] 2025-11-28 00:25:53,280 | INFO     | left removable region: 10
[2025-11-28 01:26:59] 2025-11-28 00:25:53,282 | INFO     | sum of square deviations: 804335558031.4756
[2025-11-28 01:26:59] 2025-11-28 00:25:53,342 | INFO     | sum of deviations: 2063561092455.859
[2025-11-28 01:26:59] 2025-11-28 00:25:53,342 | INFO     | mean x: 1764247148.576419
[2025-11-28 01:26:59] 2025-11-28 00:25:53,342 | INFO     | mean y: 2854735.9585152837
[2025-11-28 01:26:59] 2025-11-28 00:25:53,342 | INFO     | intersect: -4523405152.623984
[2025-11-28 01:26:59] 2025-11-28 00:25:53,344 | INFO     | chi2: 15.807362148724543
[2025-11-28 01:26:59] 2025-11-28 00:25:53,344 | INFO     | current memory leak: 2.57 B/s (using 1374 data points, chi2=15.81)
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | ..............................
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | . Timing measurements:
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | . get job = 0 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | . initial setup = 9 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | . payload setup = 154 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | . stage-in = 0 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,347 | INFO     | . payload execution = 84946 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,348 | INFO     | . stage-out = 5 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,348 | INFO     | . log creation = 2 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,348 | INFO     | ..............................
[2025-11-28 01:26:59] 2025-11-28 00:25:53,481 | INFO     | 
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | job summary report
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | --------------------------------------------------
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | PanDA job id: 6895374373
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | task id: 47556137
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | errors: (none)
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | pilot state: finished 
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | transexitcode: 0
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | exeerrorcode: 0
[2025-11-28 01:26:59] 2025-11-28 00:25:53,482 | INFO     | exeerrordiag: 
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | exitcode: 0
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | exitmsg: OK
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | cpuconsumptiontime: 318534 s
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | nevents: 1000
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | neventsw: 0
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | pid: 11467
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | pgrp: 11467
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | corecount: 8
[2025-11-28 01:26:59] 2025-11-28 00:25:53,483 | INFO     | event service: False
[2025-11-28 01:26:59] 2025-11-28 00:25:53,484 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 44: 2284427, 55: 2284583, 66: 2284611, 77: 2284639, 87: 2284695, 98: 2284723, 105: 2285293, 
[2025-11-28 01:26:59] 2025-11-28 00:25:53,484 | INFO     | --------------------------------------------------
[2025-11-28 01:26:59] 2025-11-28 00:25:53,484 | INFO     | 
[2025-11-28 01:26:59] 2025-11-28 00:25:53,484 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-11-28 01:26:59] 2025-11-28 00:25:53,918 | INFO     | time since job start (85414s) is within the limit (172800.0s)
[2025-11-28 01:26:59] 2025-11-28 00:25:54,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:26:59] 2025-11-28 00:25:54,080 | INFO     | job 6895374373 has completed (purged errors)
[2025-11-28 01:26:59] 2025-11-28 00:25:54,081 | INFO     | overall cleanup function is called
[2025-11-28 01:26:59] 2025-11-28 00:25:55,098 | INFO     | --- collectZombieJob: --- 10, [11467]
[2025-11-28 01:26:59] 2025-11-28 00:25:55,098 | INFO     | zombie collector waiting for pid 11467
[2025-11-28 01:26:59] 2025-11-28 00:25:55,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:26:59] 2025-11-28 00:25:55,098 | INFO     | collected zombie processes
[2025-11-28 01:26:59] 2025-11-28 00:25:55,098 | INFO     | will attempt to kill all subprocesses of pid=11467
[2025-11-28 01:26:59] 2025-11-28 00:25:55,229 | INFO     | process IDs to be killed: [11467] (in reverse order)
[2025-11-28 01:26:59] 2025-11-28 00:25:56,100 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:26:59] 2025-11-28 00:25:56,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:26:59] 2025-11-28 00:25:56,103 | INFO     | did not find any defunct processes belonging to 11467
[2025-11-28 01:26:59] 2025-11-28 00:25:56,106 | INFO     | did not find any defunct processes belonging to 11467
[2025-11-28 01:26:59] 2025-11-28 00:25:56,158 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:26:59] 2025-11-28 00:25:56,158 | INFO     | ready for new job
[2025-11-28 01:26:59] 2025-11-28 00:25:56,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:26:59] 2025-11-28 00:25:56,163 | INFO     | ***************************************
[2025-11-28 01:26:59] 2025-11-28 00:25:56,164 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:26:59] 2025-11-28 00:25:56,164 | INFO     | ***************************************
[2025-11-28 01:26:59] 2025-11-28 00:25:56,164 | INFO     | 
[2025-11-28 01:26:59] 2025-11-28 00:25:56,164 | INFO     | pilot is running in a VM
[2025-11-28 01:26:59] 2025-11-28 00:25:56,165 | INFO     | architecture information:
[2025-11-28 01:26:59] 2025-11-28 00:25:56,176 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:26:59] 2025-11-28 00:25:56,356 | INFO     | cat /etc/os-release:
[2025-11-28 01:26:59] NAME="CentOS Linux"
[2025-11-28 01:26:59] VERSION="7 (Core)"
[2025-11-28 01:26:59] ID="centos"
[2025-11-28 01:26:59] ID_LIKE="rhel fedora"
[2025-11-28 01:26:59] VERSION_ID="7"
[2025-11-28 01:26:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:26:59] ANSI_COLOR="0;31"
[2025-11-28 01:26:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:26:59] HOME_URL="https://www.centos.org/"
[2025-11-28 01:26:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:26:59] 
[2025-11-28 01:26:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:26:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:26:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:26:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:26:59] 
[2025-11-28 01:26:59] 2025-11-28 00:25:56,356 | INFO     | ***************************************
[2025-11-28 01:26:59] 2025-11-28 00:25:56,860 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-11-28 01:26:59] 2025-11-28 00:25:56,985 | INFO     | sufficient remaining disk space (495119761408 B)
[2025-11-28 01:26:59] 2025-11-28 00:25:56,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:26:59] 2025-11-28 00:25:56,986 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:26:59] 2025-11-28 00:25:56,986 | INFO     | update_server=False
[2025-11-28 01:26:59] 2025-11-28 00:25:56,986 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:26:59] 2025-11-28 00:25:56,993 | INFO     | all payload control threads have been joined
[2025-11-28 01:26:59] 2025-11-28 00:25:57,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:26:59] 2025-11-28 00:25:57,372 | INFO     | all job control threads have been joined
[2025-11-28 01:26:59] 2025-11-28 00:25:57,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:26:59] 2025-11-28 00:25:57,405 | INFO     | aborting loop
[2025-11-28 01:26:59] 2025-11-28 00:25:57,765 | INFO     | all data control threads have been joined
[2025-11-28 01:26:59] 2025-11-28 00:25:57,992 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:57,999 | INFO     | [payload] control thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,180 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,321 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,378 | INFO     | [job] control thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,391 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,411 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,498 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:26:59] 2025-11-28 00:25:58,600 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,709 | INFO     | [job] validate thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:58,771 | INFO     | [data] control thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:59,015 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:59,167 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:59,181 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:59,504 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:25:59,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:26:59] 2025-11-28 00:26:03,774 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:26:59] 2025-11-28 00:26:27,063 | INFO     | PID=4882 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 01:26:59] 2025-11-28 00:26:27,063 | INFO     | .. there are 9 such processes running
[2025-11-28 01:26:59] 2025-11-28 00:26:27,063 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:26:59] 2025-11-28 00:26:27,063 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:26:59] 2025-11-28 00:26:27,063 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:26:59] 2025-11-28 00:26:47,917 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:26:59] 2025-11-28 00:26:49,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140609278723904)>', '<ExcThread(monitor, started 140608563832576)>']
[2025-11-28 01:26:59] 2025-11-28 00:26:50,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:26:59] 2025-11-28 00:26:50,203 | INFO     | [monitor] control thread has ended
[2025-11-28 01:26:59] 2025-11-28 00:26:54,835 | INFO     | all workflow threads have been joined
[2025-11-28 01:26:59] 2025-11-28 00:26:54,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:26:59] 2025-11-28 00:26:54,835 | INFO     | traces error code: 0
[2025-11-28 01:26:59] 2025-11-28 00:26:54,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:26:59] 2025-11-28 00:26:55,138 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:26:59] 2025-11-28 00:26:55,220 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:26:59] 2025-11-28 00:26:55,319 [wrapper] pilotpid: 4882
[2025-11-28 01:26:59] 2025-11-28 00:26:55,383 [wrapper] Pilot exit status: 0
[2025-11-28 01:26:59] 2025-11-28 00:26:55,599 [wrapper] pandaids: 6895374373
[2025-11-28 01:26:59] 2025-11-28 00:26:55,976 [wrapper] cleanup supervisor_pilot 17322 4883
[2025-11-28 01:26:59] 2025-11-28 00:26:56,084 [wrapper] Test setup, not cleaning
[2025-11-28 01:26:59] 2025-11-28 00:26:56,145 [wrapper] apfmon messages muted
[2025-11-28 01:26:59] 2025-11-28 00:26:56,208 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:26:59] 2025-11-28 00:26:56,247 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:26:59]  *** Error codes and diagnostics ***
[2025-11-28 01:26:59]     "exeErrorCode": 0,
[2025-11-28 01:26:59]     "exeErrorDiag": "",
[2025-11-28 01:26:59]     "pilotErrorCode": 0,
[2025-11-28 01:26:59]     "pilotErrorDiag": "",
[2025-11-28 01:26:59]  *** Listing of results directory ***
[2025-11-28 01:26:59] total 1338332
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc    576529 Nov 23 23:35 pilot3.tar.gz
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc      5112 Nov 23 23:59 queuedata.json
[2025-11-28 01:26:59] -rwx------. 1 boinc boinc     36292 Nov 23 23:59 runpilot2-wrapper.sh
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:26:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:38 run_atlas
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:38 job.xml
[2025-11-28 01:26:59] -rw-r--r--. 2 boinc boinc 412421816 Nov 27 01:38 EVNT.47483658._000938.pool.root.1
[2025-11-28 01:26:59] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:38 start_atlas.sh
[2025-11-28 01:26:59] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:38 shared
[2025-11-28 01:26:59] -rw-r--r--. 2 boinc boinc    590106 Nov 27 01:38 input.tar.gz
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc      6394 Nov 27 01:38 init_data.xml
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:38 boinc_lockfile
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc      2785 Nov 27 01:38 pandaJob.out
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc    991546 Nov 27 01:42 agis_schedconf.cvmfs.json
[2025-11-28 01:26:59] drwx------. 5 boinc boinc      4096 Nov 27 01:42 pilot3
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:50 boinc_task_state.xml
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc 926402445 Nov 28 01:22 HITS.47556137._009246.pool.root.1
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc      1029 Nov 28 01:24 memory_monitor_summary.json
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc   1516240 Nov 28 01:24 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc   2472717 Nov 28 01:24 log.47556137._009246.job.log.tgz.1
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc        95 Nov 28 01:25 pilot_heartbeat.json
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc      7949 Nov 28 01:25 heartbeat.json
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc      8192 Nov 28 01:26 boinc_mmap_file
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc        29 Nov 28 01:26 wrapper_checkpoint.txt
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc      4884 Nov 28 01:26 pilotlog.txt
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc  11389287 Nov 28 01:26 log.47556137._009246.job.log.1
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc       353 Nov 28 01:26 output.list
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc       620 Nov 28 01:26 runtime_log
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc  13885440 Nov 28 01:26 result.tar.gz
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc       662 Nov 28 01:26 yUeNDmXEYh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUGLKDm0qZvRo.diag
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc      8833 Nov 28 01:26 runtime_log.err
[2025-11-28 01:26:59] -rw-r--r--. 1 boinc boinc     21504 Nov 28 01:26 stderr.txt
[2025-11-28 01:26:59] HITS file was successfully produced:
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc 926402445 Nov 28 01:22 shared/HITS.pool.root.1
[2025-11-28 01:26:59]  *** Contents of shared directory: ***
[2025-11-28 01:26:59] total 1321604
[2025-11-28 01:26:59] -rw-r--r--. 2 boinc boinc 412421816 Nov 27 01:38 ATLAS.root_0
[2025-11-28 01:26:59] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:38 start_atlas.sh
[2025-11-28 01:26:59] -rw-r--r--. 2 boinc boinc    590106 Nov 27 01:38 input.tar.gz
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc 926402445 Nov 28 01:22 HITS.pool.root.1
[2025-11-28 01:26:59] -rw-------. 1 boinc boinc  13885440 Nov 28 01:26 result.tar.gz
01:27:01 (1091): run_atlas exited; CPU time 319078.828547
01:27:01 (1091): called boinc_finish(0)

</stderr_txt>
]]>

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