Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-25 00:03:17 (13156): vboxwrapper version 26210
2025-11-25 00:03:17 (13156): BOINC client version: 8.0.2
2025-11-25 00:03:18 (13156): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-25 00:03:18 (13156): Successfully copied 'init_data.xml' to the shared directory.
2025-11-25 00:03:18 (13156): Create VM. (boinc_9f6c618fca84f118, slot#1)
2025-11-25 00:03:19 (13156): Setting Memory Size for VM. (4800MB)
2025-11-25 00:03:19 (13156): Setting CPU Count for VM. (8)
2025-11-25 00:03:20 (13156): Setting Chipset Options for VM.
2025-11-25 00:03:20 (13156): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-25 00:03:20 (13156): Setting Boot Options for VM.
2025-11-25 00:03:21 (13156): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-25 00:03:21 (13156): Enabling VM Network Access.
2025-11-25 00:03:21 (13156): Disabling USB Support for VM.
2025-11-25 00:03:21 (13156): Disabling COM Port Support for VM.
2025-11-25 00:03:22 (13156): Disabling LPT Port Support for VM.
2025-11-25 00:03:22 (13156): Disabling Audio Support for VM.
2025-11-25 00:03:22 (13156): Disabling Clipboard Support for VM.
2025-11-25 00:03:22 (13156): Disabling Drag and Drop Support for VM.
2025-11-25 00:03:23 (13156): Adding storage controller(s) to VM.
2025-11-25 00:03:23 (13156): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-25 00:03:25 (13156): Adding VirtualBox Guest Additions to VM.
2025-11-25 00:03:25 (13156): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-25 00:03:25 (13156): forwarding host port 57435 to guest port 80
2025-11-25 00:03:26 (13156): Enabling remote desktop for VM.
2025-11-25 00:03:26 (13156): Enabling shared directory for VM.
2025-11-25 00:03:27 (13156): Starting VM using VBoxManage interface. (boinc_9f6c618fca84f118, slot#1)
2025-11-25 00:03:32 (13156): Successfully started VM. (PID = '8840')
2025-11-25 00:03:32 (13156): Reporting VM Process ID to BOINC.
2025-11-25 00:03:32 (13156): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-25 00:03:32 (13156): Guest Log: CPUID EDX: 0x178bfbff
2025-11-25 00:03:32 (13156): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-25 00:03:32 (13156): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-25 00:03:32 (13156): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-25 00:03:32 (13156): Detected: Web Application Enabled (http://localhost:57435)
2025-11-25 00:03:32 (13156): Detected: Remote Desktop Enabled (localhost:57444)
2025-11-25 00:03:32 (13156): Preference change detected
2025-11-25 00:03:32 (13156): Setting CPU throttle for VM. (50%)
2025-11-25 00:03:32 (13156): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-25 00:03:34 (13156): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-25 00:03:34 (13156): Guest Log: BIOS: Booting from Hard Disk...
2025-11-25 00:03:37 (13156): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-25 00:03:37 (13156): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-25 00:03:37 (13156): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-25 00:03:41 (13156): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-25 00:03:41 (13156): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-25 00:03:48 (13156): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000083 main     Log opened 2025-11-25T00:03:45.876225000Z
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000158 main     OS Product: Linux
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000178 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000200 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000221 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000221 main     Process ID: 1372
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000221 main     Package type: LINUX_64BITS_GENERIC
2025-11-25 00:03:48 (13156): Guest Log: 00:00:00.000799 main     5.2.32 r132073 started. Verbose level = 0
2025-11-25 00:03:48 (13156): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-25 00:03:48 (13156): Guest Log: [INFO] Mounting shared directory
2025-11-25 00:03:48 (13156): Guest Log: [INFO] Checking for init_data.xml
2025-11-25 00:03:55 (13156): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-25 00:03:55 (13156): Guest Log: [INFO] Detected branch: prod
2025-11-25 00:03:55 (13156): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-25 00:03:56 (13156): Guest Log: Copying input files
2025-11-25 00:03:58 (13156): Guest Log: 00:00:10.002688 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 674 761 000ns (GuestNow=1 764 021 837 203 015 000 ns GuestLast=1 764 029 025 877 776 000 ns fSetTimeLastLoop=true )
2025-11-25 00:03:58 (13156): Guest Log: Copied input files into RunAtlas.
2025-11-25 00:03:58 (13156): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-25 00:03:58 (13156): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-25 00:03:58 (13156): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-25 00:03:58 (13156): Guest Log: Further information can be found at the LHC@home message board.
2025-11-25 00:04:07 (13156): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-25 00:04:07 (13156): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-25 00:04:07 (13156): Guest Log: 2.6.3.0 1648 0 30128 153259 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-25 00:04:08 (13156): Guest Log: copied the webapp to /var/www
2025-11-25 00:04:08 (13156): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-25 00:04:08 (13156): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-25 00:04:08 (13156): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-25 00:04:08 (13156): Guest Log:  *** Starting ATLAS job. (PandaID=6895351267 taskID=47556137) ***
2025-11-25 01:43:34 (13156): Status Report: Elapsed Time: '6000.000000'
2025-11-25 01:43:34 (13156): Status Report: CPU Time: '24114.109375'
2025-11-25 03:23:36 (13156): Status Report: Elapsed Time: '12000.000000'
2025-11-25 03:23:36 (13156): Status Report: CPU Time: '52969.890625'
2025-11-25 04:34:23 (13156): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 04:34:42 (13156): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 05:04:05 (13156): Status Report: Elapsed Time: '18000.000000'
2025-11-25 05:04:05 (13156): Status Report: CPU Time: '81866.937500'
2025-11-25 06:44:06 (13156): Status Report: Elapsed Time: '24000.000000'
2025-11-25 06:44:06 (13156): Status Report: CPU Time: '110726.281250'
2025-11-25 07:00:02 (13156): VM state change detected. (old = 'running', new = 'paused')
2025-11-25 21:00:02 (13156): VM state change detected. (old = 'paused', new = 'running')
2025-11-25 21:00:05 (13156): Guest Log: 06:56:03.024674 timesync vgsvcTimeSyncWorker: Radical host time change: 50 410 599 000 000ns (HostNow=1 764 097 205 143 000 000 ns HostLast=1 764 046 794 544 000 000 ns)
2025-11-25 21:00:15 (13156): Guest Log: 06:56:13.025796 timesync vgsvcTimeSyncWorker: Radical guest time change: 50 424 919 446 000ns (GuestNow=1 764 097 215 144 293 000 ns GuestLast=1 764 046 790 224 847 000 ns fSetTimeLastLoop=true )
2025-11-25 22:24:10 (13156): Status Report: Elapsed Time: '30000.000000'
2025-11-25 22:24:10 (13156): Status Report: CPU Time: '139576.078125'
2025-11-26 00:04:11 (13156): Status Report: Elapsed Time: '36000.000000'
2025-11-26 00:04:11 (13156): Status Report: CPU Time: '168462.187500'
2025-11-26 00:54:04 (13156): Guest Log:  *** Job finished ***
2025-11-26 00:54:04 (13156): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:53:21,999 | INFO     | [data] copytool_out thread has finished
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:53:24,587 | INFO     | [data] queue_monitor thread has finished
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:53:57,275 | INFO     | [monitor] cgroup control has ended
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:53:57,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835412404032)>', '<ExcThread(monitor, started 139834538587904)>']
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:53:58,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:53:58,128 | INFO     | [monitor] control thread has ended
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,897 | INFO     | all workflow threads have been joined
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,897 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,897 | INFO     | traces error code: 0
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,962 [wrapper] ==== pilot stdout END ====
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,965 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,968 [wrapper] pilotpid: 6099
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:02,971 [wrapper] Pilot exit status: 0
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:03,008 [wrapper] pandaids: 6895351267
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:03,032 [wrapper] cleanup supervisor_pilot 19683 6100
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:03,038 [wrapper] Test setup, not cleaning
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:03,041 [wrapper] apfmon messages muted
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:03,044 [wrapper] ==== wrapper stdout END ====
2025-11-26 00:54:04 (13156): Guest Log: 2025-11-25 22:54:03,047 [wrapper] ==== wrapper stderr END ====
2025-11-26 00:54:04 (13156): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 00:54:04 (13156): Guest Log:     "exeErrorCode": 0,
2025-11-26 00:54:04 (13156): Guest Log:     "exeErrorDiag": "",
2025-11-26 00:54:04 (13156): Guest Log:     "pilotErrorCode": 0,
2025-11-26 00:54:04 (13156): Guest Log:     "pilotErrorDiag": "",
2025-11-26 00:54:04 (13156): Guest Log:  *** Listing of results directory ***
2025-11-26 00:54:04 (13156): Guest Log: total 928620
2025-11-26 00:54:04 (13156): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 23:50 pilot3.tar.gz
2025-11-26 00:54:04 (13156): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 00:10 queuedata.json
2025-11-26 00:54:04 (13156): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 00:10 runpilot2-wrapper.sh
2025-11-26 00:54:04 (13156): Guest Log: -rwxr-xr-x. 1 atlas atlas    590098 Nov 24 22:03 input.tar.gz
2025-11-26 00:54:04 (13156): Guest Log: -rwxr-xr-x. 1 atlas atlas      9435 Nov 24 22:03 init_data.xml
2025-11-26 00:54:04 (13156): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 22:03 start_atlas.sh
2025-11-26 00:54:04 (13156): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 22:03 EVNT.47483658._000545.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 00:54:04 (13156): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 24 22:04 pandaJob.out
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 24 22:06 agis_schedconf.cvmfs.json
2025-11-26 00:54:04 (13156): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 22:06 pilot3
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas 933845615 Nov 25 22:52 HITS.47556137._005405.pool.root.1
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas        98 Nov 25 22:52 pilot_heartbeat.json
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 25 22:53 memory_monitor_summary.json
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 22:53 agis_ddmendpoints.agis.ALL.json
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas   1855374 Nov 25 22:53 log.47556137._005405.job.log.tgz.1
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas      8637 Nov 25 22:53 heartbeat.json
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 25 22:54 pilotlog.txt
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas   4754267 Nov 25 22:54 log.47556137._005405.job.log.1
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 22:54 output.list
2025-11-26 00:54:04 (13156): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 22:54 runtime_log
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas   6625280 Nov 25 22:54 result.tar.gz
2025-11-26 00:54:04 (13156): Guest Log: -rw-r--r--. 1 atlas atlas      8735 Nov 25 22:54 runtime_log.err
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas       657 Nov 25 22:54 8ToNDmVrCh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVMIKDmcMRYTn.diag
2025-11-26 00:54:04 (13156): Guest Log: Looking for outputfile HITS.47556137._005405.pool.root.1
2025-11-26 00:54:04 (13156): Guest Log: HITS file was successfully produced
2025-11-26 00:54:04 (13156): Guest Log: -rw-------. 1 atlas atlas 933845615 Nov 25 22:52 /home/atlas/RunAtlas/HITS.47556137._005405.pool.root.1
2025-11-26 00:54:08 (13156): Guest Log: Successfully finished the ATLAS job!
2025-11-26 00:54:08 (13156): Guest Log: Copying the results back to the shared directory!
2025-11-26 00:54:08 (13156): Guest Log:  *** Contents of shared directory: ***
2025-11-26 00:54:08 (13156): Guest Log: total 1322204
2025-11-26 00:54:08 (13156): Guest Log: -rwxrwxrwx. 1 root root 412836702 Nov 24 22:03 ATLAS.root_0
2025-11-26 00:54:08 (13156): Guest Log: -rwxrwxrwx. 1 root root 933845615 Nov 25 22:54 HITS.pool.root.1
2025-11-26 00:54:08 (13156): Guest Log: -rwxrwxrwx. 1 root root      9435 Nov 24 22:03 init_data.xml
2025-11-26 00:54:08 (13156): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 24 21:58 input.tar.gz
2025-11-26 00:54:08 (13156): Guest Log: -rwxrwxrwx. 1 root root   6625280 Nov 25  2025 result.tar.gz
2025-11-26 00:54:08 (13156): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 21:58 start_atlas.sh
2025-11-26 00:54:08 (13156): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 00:54:08 (13156): VM Completion File Detected.
2025-11-26 00:54:08 (13156): Powering off VM.
2025-11-26 00:54:09 (13156): Successfully stopped VM.
2025-11-26 00:54:09 (13156): Deregistering VM. (boinc_9f6c618fca84f118, slot#1)
2025-11-26 00:54:09 (13156): Removing network bandwidth throttle group from VM.
2025-11-26 00:54:09 (13156): Removing VM from VirtualBox.
2025-11-26 00:54:14 (13156): called boinc_finish(0)

</stderr_txt>
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