Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:16 (4094843): wrapper (7.7.26015): starting
00:00:16 (4094843): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:00:16] Arguments: --nthreads 12
[2025-11-25 00:00:16] Threads: 12
[2025-11-25 00:00:16] Checking for CVMFS
[2025-11-25 00:00:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:19] 2.13.3.0 10978 28116 348816 153270 1 159 21704438 40960000 16832 16776704 0 63742199 99.526 82002838 38842 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:00:19] CVMFS is ok
[2025-11-25 00:00:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:19] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:19] Checking for apptainer binary...
[2025-11-25 00:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:19] Running /usr/bin/apptainer --version
[2025-11-25 00:00:20] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:20] c6-8-12-1.aglt2.org
[2025-11-25 00:00:20] apptainer works
[2025-11-25 00:00:20] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:00:20] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:00:21] Starting ATLAS job with PandaID=6895361202
[2025-11-25 00:00:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:02:35]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:02:35] 2025-11-26 02:01:45,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:02:35] 2025-11-26 02:01:46,555 | INFO     | time since job start (75596s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:48,353 | INFO     | monitor loop #4386: job 0:6895361202 is in state 'finished'
[2025-11-25 21:02:35] 2025-11-26 02:01:48,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:02:35] 2025-11-26 02:01:48,567 | INFO     | time since job start (75598s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:50,574 | INFO     | time since job start (75600s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:50,873 | INFO     | monitor loop #4387: job 0:6895361202 is in state 'finished'
[2025-11-25 21:02:35] 2025-11-26 02:01:50,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:02:35] 2025-11-26 02:01:52,607 | INFO     | time since job start (75602s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:53,380 | INFO     | monitor loop #4388: job 0:6895361202 is in state 'finished'
[2025-11-25 21:02:35] 2025-11-26 02:01:53,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:02:35] 2025-11-26 02:01:54,619 | INFO     | time since job start (75604s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:55,265 [wrapper] supervise_pilot (15 min periods counter: 85)
[2025-11-25 21:02:35] 2025-11-26 02:01:55,887 | INFO     | monitor loop #4389: job 0:6895361202 is in state 'finished'
[2025-11-25 21:02:35] 2025-11-26 02:01:55,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:02:35] 2025-11-26 02:01:56,627 | INFO     | time since job start (75606s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:57,651 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 21:02:35] 2025-11-26 02:01:57,667 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2974.8023571428575
[2025-11-25 21:02:35] 2025-11-26 02:01:57,683 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895361202/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:02:35] 2025-11-26 02:01:57,684 | INFO     | extracted standard info from prmon json
[2025-11-25 21:02:35] 2025-11-26 02:01:57,684 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:02:35] 2025-11-26 02:01:57,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:02:35] 2025-11-26 02:01:57,722 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:02:35] 2025-11-26 02:01:57,725 | INFO     | sum of square deviations: 585480246679.6365
[2025-11-25 21:02:35] 2025-11-26 02:01:57,811 | INFO     | sum of deviations: 3858255371829.383
[2025-11-25 21:02:35] 2025-11-26 02:01:57,812 | INFO     | mean x: 1764084753.171521
[2025-11-25 21:02:35] 2025-11-26 02:01:57,812 | INFO     | mean y: 3506698.6302588996
[2025-11-25 21:02:35] 2025-11-26 02:01:57,812 | INFO     | intersect: -11621632687.174849
[2025-11-25 21:02:35] 2025-11-26 02:01:57,813 | INFO     | chi2: 24.99591612937429
[2025-11-25 21:02:35] 2025-11-26 02:01:57,819 | INFO     | sum of square deviations: 578405245413.9285
[2025-11-25 21:02:35] 2025-11-26 02:01:57,869 | INFO     | sum of deviations: 4378669502985.663
[2025-11-25 21:02:35] 2025-11-26 02:01:57,869 | INFO     | mean x: 1764084600.6929326
[2025-11-25 21:02:35] 2025-11-26 02:01:57,869 | INFO     | mean y: 3517912.8245329
[2025-11-25 21:02:35] 2025-11-26 02:01:57,869 | INFO     | intersect: -13351034977.18765
[2025-11-25 21:02:35] 2025-11-26 02:01:57,875 | INFO     | chi2: 21.392487892785244
[2025-11-25 21:02:35] 2025-11-26 02:01:57,875 | INFO     | current chi2=21.392487892785244 (change=14.416067880602418 %)
[2025-11-25 21:02:35] 2025-11-26 02:01:57,875 | INFO     | right removable region: 1230
[2025-11-25 21:02:35] 2025-11-26 02:01:57,876 | INFO     | sum of square deviations: 578401119963.1588
[2025-11-25 21:02:35] 2025-11-26 02:01:57,926 | INFO     | sum of deviations: 3240079555097.319
[2025-11-25 21:02:35] 2025-11-26 02:01:57,926 | INFO     | mean x: 1764084905.6945572
[2025-11-25 21:02:35] 2025-11-26 02:01:57,926 | INFO     | mean y: 3520015.7481722175
[2025-11-25 21:02:35] 2025-11-26 02:01:57,926 | INFO     | intersect: -9878506901.420975
[2025-11-25 21:02:35] 2025-11-26 02:01:57,930 | INFO     | chi2: 20.766679304530843
[2025-11-25 21:02:35] 2025-11-26 02:01:57,930 | INFO     | current chi2=20.766679304530843 (change=16.919711215838984 %)
[2025-11-25 21:02:35] 2025-11-26 02:01:57,931 | INFO     | left removable region: 10
[2025-11-25 21:02:35] 2025-11-26 02:01:57,932 | INFO     | sum of square deviations: 563033388852.1835
[2025-11-25 21:02:35] 2025-11-26 02:01:58,023 | INFO     | sum of deviations: 3406686626023.744
[2025-11-25 21:02:35] 2025-11-26 02:01:58,023 | INFO     | mean x: 1764084875.2426229
[2025-11-25 21:02:35] 2025-11-26 02:01:58,024 | INFO     | mean y: 3544021.3049180326
[2025-11-25 21:02:35] 2025-11-26 02:01:58,024 | INFO     | intersect: -10670217909.424143
[2025-11-25 21:02:35] 2025-11-26 02:01:58,026 | INFO     | chi2: 14.003740981823452
[2025-11-25 21:02:35] 2025-11-26 02:01:58,026 | INFO     | current memory leak: 6.05 B/s (using 1220 data points, chi2=14.00)
[2025-11-25 21:02:35] 2025-11-26 02:01:58,030 | INFO     | could have reported an average CPU frequency of 2885 MHz (44 samples)
[2025-11-25 21:02:35] 2025-11-26 02:01:58,030 | INFO     | ..............................
[2025-11-25 21:02:35] 2025-11-26 02:01:58,036 | INFO     | . Timing measurements:
[2025-11-25 21:02:35] 2025-11-26 02:01:58,037 | INFO     | . get job = 0 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | . initial setup = 5 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | . payload setup = 54 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | . stage-in = 0 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | . payload execution = 75414 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | . stage-out = 8 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | . log creation = 2 s
[2025-11-25 21:02:35] 2025-11-26 02:01:58,045 | INFO     | ..............................
[2025-11-25 21:02:35] 2025-11-26 02:01:58,707 | INFO     | time since job start (75608s) is within the limit (172800.0s)
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | 
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | job summary report
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | --------------------------------------------------
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | PanDA job id: 6895361202
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | task id: 47556149
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | errors: (none)
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | pilot state: finished 
[2025-11-25 21:02:35] 2025-11-26 02:01:59,121 | INFO     | transexitcode: 0
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | exeerrorcode: 0
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | exeerrordiag: 
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | exitcode: 0
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | exitmsg: OK
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | cpuconsumptiontime: 242697 s
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | nevents: 1000
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | neventsw: 0
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | pid: 4109755
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | pgrp: 4109755
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | corecount: 12
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | event service: False
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | sizes: {0: 2283981, 1: 2284065, 2: 2284264, 13: 2284264, 24: 2284320, 35: 2284348, 37: 2284766, 46: 2284794, 75472: 2344210, 75481: 2353209, 75484: 2353265, 75529:
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | --------------------------------------------------
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | 
[2025-11-25 21:02:35] 2025-11-26 02:01:59,122 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 21:02:35] 2025-11-26 02:01:59,268 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,268 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,268 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,268 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,268 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,269 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:02:35] 2025-11-26 02:01:59,270 | INFO     | job 6895361202 has completed (purged errors)
[2025-11-25 21:02:35] 2025-11-26 02:01:59,270 | INFO     | overall cleanup function is called
[2025-11-25 21:02:35] 2025-11-26 02:02:00,440 | INFO     | --- collectZombieJob: --- 10, [4109755]
[2025-11-25 21:02:35] 2025-11-26 02:02:00,440 | INFO     | zombie collector waiting for pid 4109755
[2025-11-25 21:02:35] 2025-11-26 02:02:00,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:02:35] 2025-11-26 02:02:00,440 | INFO     | collected zombie processes
[2025-11-25 21:02:35] 2025-11-26 02:02:00,440 | INFO     | will attempt to kill all subprocesses of pid=4109755
[2025-11-25 21:02:35] 2025-11-26 02:02:03,231 | INFO     | process IDs to be killed: [4109755] (in reverse order)
[2025-11-25 21:02:35] 2025-11-26 02:02:03,560 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:02:35] 2025-11-26 02:02:03,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:02:35] 2025-11-26 02:02:03,604 | INFO     | did not find any defunct processes belonging to 4109755
[2025-11-25 21:02:35] 2025-11-26 02:02:03,626 | INFO     | did not find any defunct processes belonging to 4109755
[2025-11-25 21:02:35] 2025-11-26 02:02:03,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:02:35] 2025-11-26 02:02:03,645 | INFO     | ready for new job
[2025-11-25 21:02:35] 2025-11-26 02:02:03,645 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:02:35] 2025-11-26 02:02:03,661 | INFO     | ***************************************
[2025-11-25 21:02:35] 2025-11-26 02:02:03,661 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:02:35] 2025-11-26 02:02:03,661 | INFO     | ***************************************
[2025-11-25 21:02:35] 2025-11-26 02:02:03,661 | INFO     | 
[2025-11-25 21:02:35] 2025-11-26 02:02:03,664 | INFO     | architecture information:
[2025-11-25 21:02:35] 2025-11-26 02:02:03,668 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:02:35] 2025-11-26 02:02:03,748 | INFO     | cat /etc/os-release:
[2025-11-25 21:02:35] NAME="CentOS Linux"
[2025-11-25 21:02:35] VERSION="7 (Core)"
[2025-11-25 21:02:35] ID="centos"
[2025-11-25 21:02:35] ID_LIKE="rhel fedora"
[2025-11-25 21:02:35] VERSION_ID="7"
[2025-11-25 21:02:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:02:35] ANSI_COLOR="0;31"
[2025-11-25 21:02:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:02:35] HOME_URL="https://www.centos.org/"
[2025-11-25 21:02:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:02:35] 
[2025-11-25 21:02:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:02:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:02:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:02:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:02:35] 
[2025-11-25 21:02:35] 2025-11-26 02:02:03,748 | INFO     | ***************************************
[2025-11-25 21:02:35] 2025-11-26 02:02:04,252 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 21:02:35] 2025-11-26 02:02:04,375 | INFO     | sufficient remaining disk space (53092548608 B)
[2025-11-25 21:02:35] 2025-11-26 02:02:04,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:02:35] 2025-11-26 02:02:04,375 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:02:35] 2025-11-26 02:02:04,375 | INFO     | update_server=False
[2025-11-25 21:02:35] 2025-11-26 02:02:04,376 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:02:35] 2025-11-26 02:02:04,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:02:35] 2025-11-26 02:02:04,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:02:35] 2025-11-26 02:02:04,514 | INFO     | all payload control threads have been joined
[2025-11-25 21:02:35] 2025-11-26 02:02:04,550 | INFO     | all job control threads have been joined
[2025-11-25 21:02:35] 2025-11-26 02:02:04,567 | INFO     | all data control threads have been joined
[2025-11-25 21:02:35] 2025-11-26 02:02:04,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:02:35] 2025-11-26 02:02:04,728 | INFO     | aborting loop
[2025-11-25 21:02:35] 2025-11-26 02:02:05,381 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,382 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,393 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:02:35] 2025-11-26 02:02:05,541 | INFO     | [payload] control thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,570 | INFO     | [job] control thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,573 | INFO     | [data] control thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,734 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,850 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:05,850 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:06,383 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:06,575 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:06,740 | INFO     | [job] validate thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:06,846 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:06,853 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:09,453 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:02:35] 2025-11-26 02:02:12,546 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:02:35] 2025-11-26 02:02:13,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858160387904)>', '<ExcThread(monitor, started 139857221383936)>']
[2025-11-25 21:02:35] 2025-11-26 02:02:18,624 | INFO     | all workflow threads have been joined
[2025-11-25 21:02:35] 2025-11-26 02:02:18,624 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:02:35] 2025-11-26 02:02:18,624 | INFO     | traces error code: 0
[2025-11-25 21:02:35] 2025-11-26 02:02:18,624 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:02:35] 2025-11-26 02:02:34,006 | INFO     | PID=4101959 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 21:02:35] 2025-11-26 02:02:34,006 | INFO     | .. there are 18 such processes running
[2025-11-25 21:02:35] 2025-11-26 02:02:34,007 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:02:35] 2025-11-26 02:02:34,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:02:35] 2025-11-26 02:02:34,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:02:35] 2025-11-26 02:02:34,007 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:02:35] 2025-11-26 02:02:34,007 | INFO     | [monitor] control thread has ended
[2025-11-25 21:02:35] 2025-11-26 02:02:34,876 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:02:35] 2025-11-26 02:02:34,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:02:35] 2025-11-26 02:02:34,907 [wrapper] pilotpid: 4101959
[2025-11-25 21:02:35] 2025-11-26 02:02:34,925 [wrapper] Pilot exit status: 0
[2025-11-25 21:02:35] 2025-11-26 02:02:35,024 [wrapper] pandaids: 6895361202
[2025-11-25 21:02:35] 2025-11-26 02:02:35,173 [wrapper] cleanup supervisor_pilot 3068795 4101960
[2025-11-25 21:02:35] 2025-11-26 02:02:35,196 [wrapper] Test setup, not cleaning
[2025-11-25 21:02:35] 2025-11-26 02:02:35,219 [wrapper] apfmon messages muted
[2025-11-25 21:02:35] 2025-11-26 02:02:35,236 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:02:35] 2025-11-26 02:02:35,255 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:02:35]  *** Error codes and diagnostics ***
[2025-11-25 21:02:35]     "exeErrorCode": 0,
[2025-11-25 21:02:35]     "exeErrorDiag": "",
[2025-11-25 21:02:35]     "pilotErrorCode": 0,
[2025-11-25 21:02:35]     "pilotErrorDiag": "",
[2025-11-25 21:02:35]  *** Listing of results directory ***
[2025-11-25 21:02:35] total 1346584
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 08:42 pilot3.tar.gz
[2025-11-25 21:02:35] -rwx------. 1 boincer umatlas     36292 Nov 23 08:57 runpilot2-wrapper.sh
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 08:57 queuedata.json
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:02:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-25 21:02:35] -rw-r--r--. 2 boincer umatlas 411872283 Nov 25 00:00 EVNT.47483658._001167.pool.root.1
[2025-11-25 21:02:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-25 21:02:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-25 21:02:35] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:00 input.tar.gz
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:00 pandaJob.out
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas        57 Nov 25 00:00 setup.sh.local
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas    991801 Nov 25 00:01 agis_schedconf.cvmfs.json
[2025-11-25 21:02:35] drwx------. 5 boincer umatlas      4096 Nov 25 00:01 pilot3
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas       533 Nov 25 20:30 boinc_task_state.xml
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 20:55 init_data.xml
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas 938929932 Nov 25 20:59 HITS.47556149._001535.pool.root.1
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas      1058 Nov 25 21:00 memory_monitor_summary.json
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:01 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas   2749800 Nov 25 21:01 log.47556149._001535.job.log.tgz.1
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas        95 Nov 25 21:01 pilot_heartbeat.json
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas      8625 Nov 25 21:01 heartbeat.json
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas       823 Nov 25 21:02 pilotlog.txt
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:02 boinc_mmap_file
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:02 wrapper_checkpoint.txt
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas   9341645 Nov 25 21:02 log.47556149._001535.job.log.1
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas       353 Nov 25 21:02 output.list
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:02 runtime_log
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas  12113920 Nov 25 21:02 result.tar.gz
[2025-11-25 21:02:35] -rw-------. 1 boincer umatlas       661 Nov 25 21:02 qNHODm8lPh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFZIKDmSr1Hzn.diag
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas      9350 Nov 25 21:02 runtime_log.err
[2025-11-25 21:02:35] -rw-r--r--. 1 boincer umatlas     21806 Nov 25 21:02 stderr.txt
[2025-11-25 21:02:36] HITS file was successfully produced:
[2025-11-25 21:02:36] -rw-------. 1 boincer umatlas 938929932 Nov 25 20:59 shared/HITS.pool.root.1
[2025-11-25 21:02:36]  *** Contents of shared directory: ***
[2025-11-25 21:02:36] total 1331576
[2025-11-25 21:02:36] -rw-r--r--. 2 boincer umatlas 411872283 Nov 25 00:00 ATLAS.root_0
[2025-11-25 21:02:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-25 21:02:36] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:00 input.tar.gz
[2025-11-25 21:02:36] -rw-------. 1 boincer umatlas 938929932 Nov 25 20:59 HITS.pool.root.1
[2025-11-25 21:02:36] -rw-------. 1 boincer umatlas  12113920 Nov 25 21:02 result.tar.gz
21:02:37 (4094843): run_atlas exited; CPU time 243449.428596
21:02:37 (4094843): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN