Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:07:52 (26336): wrapper (7.7.26015): starting
16:07:52 (26336): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 16:07:52] Arguments: --nthreads 12
[2025-11-24 16:07:52] Threads: 12
[2025-11-24 16:07:52] Checking for CVMFS
[2025-11-24 16:07:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:07:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:07:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:07:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:07:53] 2.11.2.0 2947 285275 89920 153258 3 81 14007961 20275201 1 130560 1 128569808 99.971 16350542 12745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 16:07:53] CVMFS is ok
[2025-11-24 16:07:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 16:07:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 16:07:53] Further information can be found at the LHC@home message board.
[2025-11-24 16:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:07:53] Checking for apptainer binary...
[2025-11-24 16:07:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:07:53] Running /usr/bin/apptainer --version
[2025-11-24 16:07:53] apptainer version 1.3.2-1.el7
[2025-11-24 16:07:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:07:54] c-205-18.aglt2.org
[2025-11-24 16:07:54] apptainer works
[2025-11-24 16:07:54] Set ATHENA_PROC_NUMBER=12
[2025-11-24 16:07:54] Set ATHENA_CORE_NUMBER=12
[2025-11-24 16:07:54] Starting ATLAS job with PandaID=6895374026
[2025-11-24 16:07:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:19:59]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:19:59] 2025-11-25 04:19:37,623 | INFO     | monitor loop #1942: job 0:6895374026 is in state 'finished'
[2025-11-24 23:19:59] 2025-11-25 04:19:37,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,503 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 23:19:59] 2025-11-25 04:19:38,506 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-24 23:19:59] 2025-11-25 04:19:38,509 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895374026/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,509 | INFO     | extracted standard info from prmon json
[2025-11-24 23:19:59] 2025-11-25 04:19:38,510 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:19:59] 2025-11-25 04:19:38,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:19:59] 2025-11-25 04:19:38,516 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:19:59] 2025-11-25 04:19:38,517 | INFO     | sum of square deviations: 23636035639.75241
[2025-11-24 23:19:59] 2025-11-25 04:19:38,521 | INFO     | sum of deviations: 362339932512.533
[2025-11-24 23:19:59] 2025-11-25 04:19:38,521 | INFO     | mean x: 1764031420.6957548
[2025-11-24 23:19:59] 2025-11-25 04:19:38,521 | INFO     | mean y: 3414743.7405660376
[2025-11-24 23:19:59] 2025-11-25 04:19:38,521 | INFO     | intersect: -27039150078.334774
[2025-11-24 23:19:59] 2025-11-25 04:19:38,521 | INFO     | chi2: 6.018291903182594
[2025-11-24 23:19:59] 2025-11-25 04:19:38,522 | INFO     | sum of square deviations: 22809701274.558537
[2025-11-24 23:19:59] 2025-11-25 04:19:38,526 | INFO     | sum of deviations: 518835905305.6557
[2025-11-24 23:19:59] 2025-11-25 04:19:38,526 | INFO     | mean x: 1764031268.1980908
[2025-11-24 23:19:59] 2025-11-25 04:19:38,526 | INFO     | mean y: 3443603.5704057277
[2025-11-24 23:19:59] 2025-11-25 04:19:38,526 | INFO     | intersect: -40121709681.26823
[2025-11-24 23:19:59] 2025-11-25 04:19:38,527 | INFO     | chi2: 3.1882814428592083
[2025-11-24 23:19:59] 2025-11-25 04:19:38,527 | INFO     | current chi2=3.1882814428592083 (change=47.02348283948838 %)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,527 | INFO     | sum of square deviations: 22002855646.859936
[2025-11-24 23:19:59] 2025-11-25 04:19:38,531 | INFO     | sum of deviations: 587024602239.2952
[2025-11-24 23:19:59] 2025-11-25 04:19:38,531 | INFO     | mean x: 1764031115.700483
[2025-11-24 23:19:59] 2025-11-25 04:19:38,531 | INFO     | mean y: 3456450.526570048
[2025-11-24 23:19:59] 2025-11-25 04:19:38,531 | INFO     | intersect: -47059964800.414474
[2025-11-24 23:19:59] 2025-11-25 04:19:38,532 | INFO     | chi2: 2.4002103400518657
[2025-11-24 23:19:59] 2025-11-25 04:19:38,532 | INFO     | current chi2=2.4002103400518657 (change=24.717739538721865 %)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,532 | INFO     | right removable region: 413
[2025-11-24 23:19:59] 2025-11-25 04:19:38,532 | INFO     | sum of square deviations: 22809650644.558525
[2025-11-24 23:19:59] 2025-11-25 04:19:38,533 | INFO     | time since job start (25889s) is within the limit (172800.0s)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,537 | INFO     | sum of deviations: 232694113925.2077
[2025-11-24 23:19:59] 2025-11-25 04:19:38,537 | INFO     | mean x: 1764031573.1980908
[2025-11-24 23:19:59] 2025-11-25 04:19:38,537 | INFO     | mean y: 3438581.0095465393
[2025-11-24 23:19:59] 2025-11-25 04:19:38,537 | INFO     | intersect: -17992442647.418823
[2025-11-24 23:19:59] 2025-11-25 04:19:38,538 | INFO     | chi2: 3.8298759447147592
[2025-11-24 23:19:59] 2025-11-25 04:19:38,538 | INFO     | current chi2=3.8298759447147592 (change=36.362742015065045 %)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,539 | INFO     | sum of square deviations: 22002805869.65225
[2025-11-24 23:19:59] 2025-11-25 04:19:38,542 | INFO     | sum of deviations: 195862621776.69586
[2025-11-24 23:19:59] 2025-11-25 04:19:38,542 | INFO     | mean x: 1764031725.6956522
[2025-11-24 23:19:59] 2025-11-25 04:19:38,543 | INFO     | mean y: 3445539.4420289854
[2025-11-24 23:19:59] 2025-11-25 04:19:38,543 | INFO     | intersect: -15699455296.881186
[2025-11-24 23:19:59] 2025-11-25 04:19:38,543 | INFO     | chi2: 3.7550504897079735
[2025-11-24 23:19:59] 2025-11-25 04:19:38,543 | INFO     | current chi2=3.7550504897079735 (change=1.9537305146931738 %)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,543 | INFO     | left removable region: 20
[2025-11-24 23:19:59] 2025-11-25 04:19:38,544 | INFO     | sum of square deviations: 18821545427.714985
[2025-11-24 23:19:59] 2025-11-25 04:19:38,547 | INFO     | sum of deviations: 361943352382.12463
[2025-11-24 23:19:59] 2025-11-25 04:19:38,547 | INFO     | mean x: 1764031695.2035623
[2025-11-24 23:19:59] 2025-11-25 04:19:38,547 | INFO     | mean y: 3499977.910941476
[2025-11-24 23:19:59] 2025-11-25 04:19:38,548 | INFO     | intersect: -33919301309.709663
[2025-11-24 23:19:59] 2025-11-25 04:19:38,548 | INFO     | chi2: 0.06072195701129657
[2025-11-24 23:19:59] 2025-11-25 04:19:38,548 | INFO     | current memory leak: 19.23 B/s (using 393 data points, chi2=0.06)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | could have reported an average CPU frequency of 2390 MHz (18 samples)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | ..............................
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . Timing measurements:
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . get job = 0 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . initial setup = 2 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . payload setup = 7 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . stage-in = 0 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . payload execution = 25848 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,549 | INFO     | . stage-out = 3 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,550 | INFO     | . log creation = 0 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,550 | INFO     | ..............................
[2025-11-24 23:19:59] 2025-11-25 04:19:38,692 | INFO     | 
[2025-11-24 23:19:59] 2025-11-25 04:19:38,693 | INFO     | job summary report
[2025-11-24 23:19:59] 2025-11-25 04:19:38,693 | INFO     | --------------------------------------------------
[2025-11-24 23:19:59] 2025-11-25 04:19:38,693 | INFO     | PanDA job id: 6895374026
[2025-11-24 23:19:59] 2025-11-25 04:19:38,693 | INFO     | task id: 47556137
[2025-11-24 23:19:59] 2025-11-25 04:19:38,693 | INFO     | errors: (none)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,693 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:19:59] 2025-11-25 04:19:38,694 | INFO     | pilot state: finished 
[2025-11-24 23:19:59] 2025-11-25 04:19:38,694 | INFO     | transexitcode: 0
[2025-11-24 23:19:59] 2025-11-25 04:19:38,694 | INFO     | exeerrorcode: 0
[2025-11-24 23:19:59] 2025-11-25 04:19:38,694 | INFO     | exeerrordiag: 
[2025-11-24 23:19:59] 2025-11-25 04:19:38,694 | INFO     | exitcode: 0
[2025-11-24 23:19:59] 2025-11-25 04:19:38,694 | INFO     | exitmsg: OK
[2025-11-24 23:19:59] 2025-11-25 04:19:38,695 | INFO     | cpuconsumptiontime: 295994 s
[2025-11-24 23:19:59] 2025-11-25 04:19:38,695 | INFO     | nevents: 1000
[2025-11-24 23:19:59] 2025-11-25 04:19:38,695 | INFO     | neventsw: 0
[2025-11-24 23:19:59] 2025-11-25 04:19:38,695 | INFO     | pid: 4271
[2025-11-24 23:19:59] 2025-11-25 04:19:38,695 | INFO     | pgrp: 4271
[2025-11-24 23:19:59] 2025-11-25 04:19:38,695 | INFO     | corecount: 12
[2025-11-24 23:19:59] 2025-11-25 04:19:38,696 | INFO     | event service: False
[2025-11-24 23:19:59] 2025-11-25 04:19:38,696 | INFO     | sizes: {0: 2284138, 1: 2284337, 5: 2284599, 11: 2284655, 25860: 2321947, 25864: 2330941, 25867: 2331125, 25873: 2331371}
[2025-11-24 23:19:59] 2025-11-25 04:19:38,696 | INFO     | --------------------------------------------------
[2025-11-24 23:19:59] 2025-11-25 04:19:38,696 | INFO     | 
[2025-11-24 23:19:59] 2025-11-25 04:19:38,696 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 23:19:59] 2025-11-25 04:19:38,722 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,722 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,724 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,724 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,724 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,725 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,726 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:19:59] 2025-11-25 04:19:38,726 | INFO     | job 6895374026 has completed (purged errors)
[2025-11-24 23:19:59] 2025-11-25 04:19:38,726 | INFO     | overall cleanup function is called
[2025-11-24 23:19:59] 2025-11-25 04:19:39,743 | INFO     | --- collectZombieJob: --- 10, [4271]
[2025-11-24 23:19:59] 2025-11-25 04:19:39,743 | INFO     | zombie collector waiting for pid 4271
[2025-11-24 23:19:59] 2025-11-25 04:19:39,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:19:59] 2025-11-25 04:19:39,749 | INFO     | collected zombie processes
[2025-11-24 23:19:59] 2025-11-25 04:19:39,749 | INFO     | will attempt to kill all subprocesses of pid=4271
[2025-11-24 23:19:59] 2025-11-25 04:19:39,841 | INFO     | process IDs to be killed: [4271] (in reverse order)
[2025-11-24 23:19:59] 2025-11-25 04:19:39,892 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:19:59] 2025-11-25 04:19:39,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:19:59] 2025-11-25 04:19:39,896 | INFO     | did not find any defunct processes belonging to 4271
[2025-11-24 23:19:59] 2025-11-25 04:19:39,899 | INFO     | did not find any defunct processes belonging to 4271
[2025-11-24 23:19:59] 2025-11-25 04:19:39,901 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:19:59] 2025-11-25 04:19:39,901 | INFO     | ready for new job
[2025-11-24 23:19:59] 2025-11-25 04:19:39,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:19:59] 2025-11-25 04:19:39,903 | INFO     | ***************************************
[2025-11-24 23:19:59] 2025-11-25 04:19:39,904 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:19:59] 2025-11-25 04:19:39,904 | INFO     | ***************************************
[2025-11-24 23:19:59] 2025-11-25 04:19:39,904 | INFO     | 
[2025-11-24 23:19:59] 2025-11-25 04:19:39,904 | INFO     | architecture information:
[2025-11-24 23:19:59] 2025-11-25 04:19:39,905 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:19:59] 2025-11-25 04:19:39,921 | INFO     | cat /etc/os-release:
[2025-11-24 23:19:59] NAME="CentOS Linux"
[2025-11-24 23:19:59] VERSION="7 (Core)"
[2025-11-24 23:19:59] ID="centos"
[2025-11-24 23:19:59] ID_LIKE="rhel fedora"
[2025-11-24 23:19:59] VERSION_ID="7"
[2025-11-24 23:19:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:19:59] ANSI_COLOR="0;31"
[2025-11-24 23:19:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:19:59] HOME_URL="https://www.centos.org/"
[2025-11-24 23:19:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:19:59] 
[2025-11-24 23:19:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:19:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:19:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:19:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:19:59] 
[2025-11-24 23:19:59] 2025-11-25 04:19:39,921 | INFO     | ***************************************
[2025-11-24 23:19:59] 2025-11-25 04:19:40,424 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 23:19:59] 2025-11-25 04:19:40,442 | INFO     | sufficient remaining disk space (28236054528 B)
[2025-11-24 23:19:59] 2025-11-25 04:19:40,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:19:59] 2025-11-25 04:19:40,443 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:19:59] 2025-11-25 04:19:40,443 | INFO     | update_server=False
[2025-11-24 23:19:59] 2025-11-25 04:19:40,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:19:59] 2025-11-25 04:19:40,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:19:59] 2025-11-25 04:19:40,444 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 23:19:59] 2025-11-25 04:19:40,444 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:19:59] 2025-11-25 04:19:40,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:19:59] 2025-11-25 04:19:40,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:19:59] 2025-11-25 04:19:40,574 | INFO     | all job control threads have been joined
[2025-11-24 23:19:59] 2025-11-25 04:19:40,682 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:19:59] 2025-11-25 04:19:40,986 | INFO     | all data control threads have been joined
[2025-11-24 23:19:59] 2025-11-25 04:19:41,002 | INFO     | all payload control threads have been joined
[2025-11-24 23:19:59] 2025-11-25 04:19:41,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:19:59] 2025-11-25 04:19:41,137 | INFO     | aborting loop
[2025-11-24 23:19:59] 2025-11-25 04:19:41,449 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:41,449 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:41,580 | INFO     | [job] control thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:41,861 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:41,907 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:41,991 | INFO     | [data] control thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,007 | INFO     | [payload] control thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,142 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,154 | INFO     | [job] validate thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,221 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,240 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,245 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:42,687 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:43,011 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:43,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:19:59] 2025-11-25 04:19:47,378 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:51,110 | INFO     | job.realtimelogging is not enabled
[2025-11-24 23:19:59] 2025-11-25 04:19:51,825 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:19:59] 2025-11-25 04:19:52,115 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:19:59] 2025-11-25 04:19:54,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547446060864)>', '<ExcThread(monitor, started 140546404239104)>']
[2025-11-24 23:19:59] 2025-11-25 04:19:54,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:19:59] 2025-11-25 04:19:54,512 | INFO     | [monitor] control thread has ended
[2025-11-24 23:19:59] 2025-11-25 04:19:59,192 | INFO     | all workflow threads have been joined
[2025-11-24 23:19:59] 2025-11-25 04:19:59,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:19:59] 2025-11-25 04:19:59,199 | INFO     | traces error code: 0
[2025-11-24 23:19:59] 2025-11-25 04:19:59,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:19:59] 2025-11-25 04:19:59,293 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:19:59] 2025-11-25 04:19:59,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:19:59] 2025-11-25 04:19:59,301 [wrapper] pilotpid: 30162
[2025-11-24 23:19:59] 2025-11-25 04:19:59,305 [wrapper] Pilot exit status: 0
[2025-11-24 23:19:59] 2025-11-25 04:19:59,319 [wrapper] pandaids: 6895374026
[2025-11-24 23:19:59] 2025-11-25 04:19:59,359 [wrapper] cleanup supervisor_pilot  9981 30163
[2025-11-24 23:19:59] 2025-11-25 04:19:59,363 [wrapper] Test setup, not cleaning
[2025-11-24 23:19:59] 2025-11-25 04:19:59,367 [wrapper] apfmon messages muted
[2025-11-24 23:19:59] 2025-11-25 04:19:59,371 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:19:59] 2025-11-25 04:19:59,375 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:19:59]  *** Error codes and diagnostics ***
[2025-11-24 23:19:59]     "exeErrorCode": 0,
[2025-11-24 23:19:59]     "exeErrorDiag": "",
[2025-11-24 23:19:59]     "pilotErrorCode": 0,
[2025-11-24 23:19:59]     "pilotErrorDiag": "",
[2025-11-24 23:19:59]  *** Listing of results directory ***
[2025-11-24 23:19:59] total 1321744
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 17:35 pilot3.tar.gz
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 17:43 queuedata.json
[2025-11-24 23:19:59] -rwx------ 1 boincer umatlas     36292 Nov 23 17:45 runpilot2-wrapper.sh
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas       100 Nov 24 16:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:19:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 16:07 run_atlas
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas       105 Nov 24 16:07 job.xml
[2025-11-24 23:19:59] -rw-r--r-- 2 boincer umatlas 412037892 Nov 24 16:07 EVNT.47483658._000932.pool.root.1
[2025-11-24 23:19:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 16:07 start_atlas.sh
[2025-11-24 23:19:59] drwxrwx--x 2 boincer umatlas      4096 Nov 24 16:07 shared
[2025-11-24 23:19:59] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 16:07 input.tar.gz
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas         0 Nov 24 16:07 boinc_lockfile
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 16:07 pandaJob.out
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas        57 Nov 24 16:07 setup.sh.local
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas    991801 Nov 24 16:08 agis_schedconf.cvmfs.json
[2025-11-24 23:19:59] drwx------ 5 boincer umatlas      4096 Nov 24 16:08 pilot3
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas       532 Nov 24 23:09 boinc_task_state.xml
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 23:13 init_data.xml
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas 925852548 Nov 24 23:18 HITS.47556137._009184.pool.root.1
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas        95 Nov 24 23:19 pilot_heartbeat.json
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas      1065 Nov 24 23:19 memory_monitor_summary.json
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas   1516227 Nov 24 23:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas   2180817 Nov 24 23:19 log.47556137._009184.job.log.tgz.1
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas      8670 Nov 24 23:19 heartbeat.json
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 23:19 boinc_mmap_file
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas        29 Nov 24 23:19 wrapper_checkpoint.txt
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas      4624 Nov 24 23:19 pilotlog.txt
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas   3644715 Nov 24 23:19 log.47556137._009184.job.log.1
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas       353 Nov 24 23:19 output.list
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas       620 Nov 24 23:19 runtime_log
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas   5847040 Nov 24 23:19 result.tar.gz
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 23:19 runtime_log.err
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas       670 Nov 24 23:19 8myNDmW0Xh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGoIKDmzVMHFo.diag
[2025-11-24 23:19:59] -rw-r--r-- 1 boincer umatlas     21232 Nov 24 23:19 stderr.txt
[2025-11-24 23:19:59] HITS file was successfully produced:
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas 925852548 Nov 24 23:18 shared/HITS.pool.root.1
[2025-11-24 23:19:59]  *** Contents of shared directory: ***
[2025-11-24 23:19:59] total 1312852
[2025-11-24 23:19:59] -rw-r--r-- 2 boincer umatlas 412037892 Nov 24 16:07 ATLAS.root_0
[2025-11-24 23:19:59] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 16:07 start_atlas.sh
[2025-11-24 23:19:59] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 16:07 input.tar.gz
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas 925852548 Nov 24 23:18 HITS.pool.root.1
[2025-11-24 23:19:59] -rw------- 1 boincer umatlas   5847040 Nov 24 23:19 result.tar.gz
23:20:01 (26336): run_atlas exited; CPU time 289256.794879
23:20:01 (26336): called boinc_finish(0)

</stderr_txt>
]]>

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