Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:13:30 (521830): wrapper (7.7.26015): starting
16:13:30 (521830): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 16:13:30] Arguments: --nthreads 9
[2025-11-24 16:13:30] Threads: 9
[2025-11-24 16:13:30] Checking for CVMFS
[2025-11-24 16:13:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:13:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:13:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:13:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:13:31] 2.13.3.0 10223 27673 183236 153258 1 752 37140050 40960001 53881 16776704 0 360262209 99.772 211549812 50776 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 16:13:31] CVMFS is ok
[2025-11-24 16:13:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 16:13:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 16:13:31] Further information can be found at the LHC@home message board.
[2025-11-24 16:13:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:13:31] Checking for apptainer binary...
[2025-11-24 16:13:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:13:31] Running /usr/bin/apptainer --version
[2025-11-24 16:13:31] apptainer version 1.4.4-1.el9
[2025-11-24 16:13:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:13:31] c8-7-6.aglt2.org
[2025-11-24 16:13:31] apptainer works
[2025-11-24 16:13:31] Set ATHENA_PROC_NUMBER=9
[2025-11-24 16:13:31] Set ATHENA_CORE_NUMBER=9
[2025-11-24 16:13:31] Starting ATLAS job with PandaID=6895356903
[2025-11-24 16:13:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:05:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:05:53] 2025-11-25 04:04:41,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:05:53] 2025-11-25 04:04:42,355 | INFO     | time since job start (24639s) is within the limit (172800.0s)
[2025-11-24 23:05:53] 2025-11-25 04:04:43,717 | INFO     | monitor loop #1518: job 0:6895356903 is in state 'finished'
[2025-11-24 23:05:53] 2025-11-25 04:04:43,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:05:53] 2025-11-25 04:04:44,361 | INFO     | time since job start (24641s) is within the limit (172800.0s)
[2025-11-24 23:05:53] 2025-11-25 04:04:46,248 | INFO     | monitor loop #1519: job 0:6895356903 is in state 'finished'
[2025-11-24 23:05:53] 2025-11-25 04:04:46,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:05:53] 2025-11-25 04:04:46,368 | INFO     | time since job start (24643s) is within the limit (172800.0s)
[2025-11-24 23:05:53] 2025-11-25 04:04:48,755 | INFO     | monitor loop #1520: job 0:6895356903 is in state 'finished'
[2025-11-24 23:05:53] 2025-11-25 04:04:48,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:05:53] 2025-11-25 04:04:49,047 | INFO     | PID=541634 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 23:05:53] 2025-11-25 04:04:49,047 | INFO     | .. there are 67 such processes running
[2025-11-24 23:05:53] 2025-11-25 04:04:50,051 | INFO     | time since job start (24647s) is within the limit (172800.0s)
[2025-11-24 23:05:53] 2025-11-25 04:04:51,263 | INFO     | monitor loop #1521: job 0:6895356903 is in state 'finished'
[2025-11-24 23:05:53] 2025-11-25 04:04:51,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:05:53] 2025-11-25 04:04:52,058 | INFO     | time since job start (24649s) is within the limit (172800.0s)
[2025-11-24 23:05:53] 2025-11-25 04:04:53,692 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 23:05:53] 2025-11-25 04:04:53,701 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.995046875001
[2025-11-24 23:05:53] 2025-11-25 04:04:53,725 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895356903/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:05:53] 2025-11-25 04:04:53,725 | INFO     | extracted standard info from prmon json
[2025-11-24 23:05:53] 2025-11-25 04:04:53,725 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:05:53] 2025-11-25 04:04:53,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:05:53] 2025-11-25 04:04:53,733 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:05:53] 2025-11-25 04:04:53,733 | INFO     | sum of square deviations: 20144721116.251003
[2025-11-24 23:05:53] 2025-11-25 04:04:53,741 | INFO     | sum of deviations: -227265198184.2063
[2025-11-24 23:05:53] 2025-11-25 04:04:53,742 | INFO     | mean x: 1764031200.4751244
[2025-11-24 23:05:53] 2025-11-25 04:04:53,742 | INFO     | mean y: 2868447.6293532336
[2025-11-24 23:05:53] 2025-11-25 04:04:53,742 | INFO     | intersect: 19904007712.133194
[2025-11-24 23:05:53] 2025-11-25 04:04:53,742 | INFO     | chi2: 23.795637020343403
[2025-11-24 23:05:53] 2025-11-25 04:04:53,742 | INFO     | sum of square deviations: 19402491868.937008
[2025-11-24 23:05:53] 2025-11-25 04:04:53,748 | INFO     | sum of deviations: -86998622672.42812
[2025-11-24 23:05:53] 2025-11-25 04:04:53,748 | INFO     | mean x: 1764031047.9874055
[2025-11-24 23:05:53] 2025-11-25 04:04:53,748 | INFO     | mean y: 2897258.9143576827
[2025-11-24 23:05:53] 2025-11-25 04:04:53,749 | INFO     | intersect: 7912616926.005357
[2025-11-24 23:05:53] 2025-11-25 04:04:53,749 | INFO     | chi2: 19.680950626391787
[2025-11-24 23:05:53] 2025-11-25 04:04:53,749 | INFO     | current chi2=19.680950626391787 (change=17.291768194454644 %)
[2025-11-24 23:05:53] 2025-11-25 04:04:53,749 | INFO     | right removable region: 396
[2025-11-24 23:05:53] 2025-11-25 04:04:53,749 | INFO     | sum of square deviations: 19402252748.937004
[2025-11-24 23:05:53] 2025-11-25 04:04:53,751 | INFO     | sum of deviations: -379851607959.947
[2025-11-24 23:05:53] 2025-11-25 04:04:53,751 | INFO     | mean x: 1764031352.9874055
[2025-11-24 23:05:53] 2025-11-25 04:04:53,751 | INFO     | mean y: 2899786.410579345
[2025-11-24 23:05:53] 2025-11-25 04:04:53,751 | INFO     | intersect: 34538587708.56374
[2025-11-24 23:05:53] 2025-11-25 04:04:53,752 | INFO     | chi2: 20.251244191203853
[2025-11-24 23:05:53] 2025-11-25 04:04:53,756 | INFO     | current chi2=20.251244191203853 (change=14.895137398966762 %)
[2025-11-24 23:05:53] 2025-11-25 04:04:53,756 | INFO     | left removable region: 10
[2025-11-24 23:05:53] 2025-11-25 04:04:53,756 | INFO     | sum of square deviations: 17833851454.476616
[2025-11-24 23:05:53] 2025-11-25 04:04:53,758 | INFO     | sum of deviations: -276990830441.26935
[2025-11-24 23:05:53] 2025-11-25 04:04:53,758 | INFO     | mean x: 1764031322.507772
[2025-11-24 23:05:53] 2025-11-25 04:04:53,758 | INFO     | mean y: 2950532.756476684
[2025-11-24 23:05:53] 2025-11-25 04:04:53,758 | INFO     | intersect: 27401434937.155052
[2025-11-24 23:05:53] 2025-11-25 04:04:53,758 | INFO     | chi2: 14.142405740586945
[2025-11-24 23:05:53] 2025-11-25 04:04:53,758 | INFO     | current memory leak: -15.53 B/s (using 386 data points, chi2=14.14)
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | could have reported an average CPU frequency of 3798 MHz (17 samples)
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | ..............................
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . Timing measurements:
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . get job = 0 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . initial setup = 2 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . payload setup = 19 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . stage-in = 0 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . payload execution = 24501 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . stage-out = 4 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | . log creation = 1 s
[2025-11-24 23:05:53] 2025-11-25 04:04:53,759 | INFO     | ..............................
[2025-11-24 23:05:53] 2025-11-25 04:04:54,065 | INFO     | time since job start (24651s) is within the limit (172800.0s)
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | 
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | job summary report
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | --------------------------------------------------
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | PanDA job id: 6895356903
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | task id: 47556137
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | errors: (none)
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | pilot state: finished 
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | transexitcode: 0
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | exeerrorcode: 0
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | exeerrordiag: 
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | exitcode: 0
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | exitmsg: OK
[2025-11-24 23:05:53] 2025-11-25 04:04:54,098 | INFO     | cpuconsumptiontime: 137662 s
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | nevents: 1000
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | neventsw: 0
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | pid: 584651
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | pgrp: 584651
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | corecount: 9
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | event service: False
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | sizes: {0: 2283482, 1: 2284338, 11: 2284338, 20: 2284628, 22: 2284656, 24525: 2319648, 24530: 2328642, 24531: 2328698, 24564: 2329008}
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | --------------------------------------------------
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | 
[2025-11-24 23:05:53] 2025-11-25 04:04:54,099 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 23:05:53] 2025-11-25 04:04:54,180 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,180 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,180 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,180 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,180 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | job 6895356903 has completed (purged errors)
[2025-11-24 23:05:53] 2025-11-25 04:04:54,181 | INFO     | overall cleanup function is called
[2025-11-24 23:05:53] 2025-11-25 04:04:55,223 | INFO     | --- collectZombieJob: --- 10, [584651]
[2025-11-24 23:05:53] 2025-11-25 04:04:55,223 | INFO     | zombie collector waiting for pid 584651
[2025-11-24 23:05:53] 2025-11-25 04:04:55,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:05:53] 2025-11-25 04:04:55,223 | INFO     | collected zombie processes
[2025-11-24 23:05:53] 2025-11-25 04:04:55,223 | INFO     | will attempt to kill all subprocesses of pid=584651
[2025-11-24 23:05:53] 2025-11-25 04:04:56,734 | INFO     | process IDs to be killed: [584651] (in reverse order)
[2025-11-24 23:05:53] 2025-11-25 04:04:57,175 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:05:53] 2025-11-25 04:04:57,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:05:53] 2025-11-25 04:04:57,236 | INFO     | did not find any defunct processes belonging to 584651
[2025-11-24 23:05:53] 2025-11-25 04:04:57,298 | INFO     | did not find any defunct processes belonging to 584651
[2025-11-24 23:05:53] 2025-11-25 04:04:57,302 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:05:53] 2025-11-25 04:04:57,302 | INFO     | ready for new job
[2025-11-24 23:05:53] 2025-11-25 04:04:57,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:05:53] 2025-11-25 04:04:57,304 | INFO     | ***************************************
[2025-11-24 23:05:53] 2025-11-25 04:04:57,304 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:05:53] 2025-11-25 04:04:57,304 | INFO     | ***************************************
[2025-11-24 23:05:53] 2025-11-25 04:04:57,304 | INFO     | 
[2025-11-24 23:05:53] 2025-11-25 04:04:57,313 | INFO     | architecture information:
[2025-11-24 23:05:53] 2025-11-25 04:04:57,324 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:05:53] 2025-11-25 04:04:57,379 | INFO     | cat /etc/os-release:
[2025-11-24 23:05:53] NAME="CentOS Linux"
[2025-11-24 23:05:53] VERSION="7 (Core)"
[2025-11-24 23:05:53] ID="centos"
[2025-11-24 23:05:53] ID_LIKE="rhel fedora"
[2025-11-24 23:05:53] VERSION_ID="7"
[2025-11-24 23:05:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:05:53] ANSI_COLOR="0;31"
[2025-11-24 23:05:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:05:53] HOME_URL="https://www.centos.org/"
[2025-11-24 23:05:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:05:53] 
[2025-11-24 23:05:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:05:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:05:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:05:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:05:53] 
[2025-11-24 23:05:53] 2025-11-25 04:04:57,379 | INFO     | ***************************************
[2025-11-24 23:05:53] 2025-11-25 04:04:57,883 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 23:05:53] 2025-11-25 04:04:57,952 | INFO     | sufficient remaining disk space (160152158208 B)
[2025-11-24 23:05:53] 2025-11-25 04:04:57,952 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:05:53] 2025-11-25 04:04:57,952 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:05:53] 2025-11-25 04:04:57,952 | INFO     | update_server=False
[2025-11-24 23:05:53] 2025-11-25 04:04:57,953 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:05:53] 2025-11-25 04:04:57,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:05:53] 2025-11-25 04:04:57,953 | INFO     | aborting loop
[2025-11-24 23:05:53] 2025-11-25 04:04:57,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:05:53] 2025-11-25 04:04:58,288 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:05:53] 2025-11-25 04:04:58,354 | INFO     | all data control threads have been joined
[2025-11-24 23:05:53] 2025-11-25 04:04:58,912 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:05:53] 2025-11-25 04:04:58,958 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:58,958 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,100 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,140 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,231 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,333 | INFO     | all payload control threads have been joined
[2025-11-24 23:05:53] 2025-11-25 04:04:59,360 | INFO     | [data] control thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,398 | INFO     | [job] validate thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,445 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,619 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,638 | INFO     | all job control threads have been joined
[2025-11-24 23:05:53] 2025-11-25 04:04:59,918 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,925 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:04:59,960 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:05:00,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:05:00,339 | INFO     | [payload] control thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:05:00,645 | INFO     | [job] control thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:05:02,296 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:05:53] 2025-11-25 04:05:28,319 | INFO     | PID=541634 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 23:05:53] 2025-11-25 04:05:28,319 | INFO     | .. there are 67 such processes running
[2025-11-24 23:05:53] 2025-11-25 04:05:28,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:05:53] 2025-11-25 04:05:28,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:05:53] 2025-11-25 04:05:28,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:05:53] 2025-11-25 04:05:45,723 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:05:53] 2025-11-25 04:05:46,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393653053248)>', '<ExcThread(monitor, started 140392850765568)>']
[2025-11-24 23:05:53] 2025-11-25 04:05:46,437 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:05:53] 2025-11-25 04:05:46,437 | INFO     | [monitor] control thread has ended
[2025-11-24 23:05:53] 2025-11-25 04:05:51,353 | INFO     | all workflow threads have been joined
[2025-11-24 23:05:53] 2025-11-25 04:05:51,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:05:53] 2025-11-25 04:05:51,353 | INFO     | traces error code: 0
[2025-11-24 23:05:53] 2025-11-25 04:05:51,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:05:53] 2025-11-25 04:05:51,512 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:05:53] 2025-11-25 04:05:51,532 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:05:53] 2025-11-25 04:05:51,566 [wrapper] pilotpid: 541634
[2025-11-24 23:05:53] 2025-11-25 04:05:51,630 [wrapper] Pilot exit status: 0
[2025-11-24 23:05:53] 2025-11-25 04:05:51,823 [wrapper] pandaids: 6895356903
[2025-11-24 23:05:53] 2025-11-25 04:05:52,223 [wrapper] cleanup supervisor_pilot 3433556 541635
[2025-11-24 23:05:53] 2025-11-25 04:05:52,234 [wrapper] Test setup, not cleaning
[2025-11-24 23:05:53] 2025-11-25 04:05:52,258 [wrapper] apfmon messages muted
[2025-11-24 23:05:53] 2025-11-25 04:05:52,278 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:05:53] 2025-11-25 04:05:52,310 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:05:53]  *** Error codes and diagnostics ***
[2025-11-24 23:05:53]     "exeErrorCode": 0,
[2025-11-24 23:05:53]     "exeErrorDiag": "",
[2025-11-24 23:05:53]     "pilotErrorCode": 0,
[2025-11-24 23:05:53]     "pilotErrorDiag": "",
[2025-11-24 23:05:53]  *** Listing of results directory ***
[2025-11-24 23:05:53] total 1316208
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:30 queuedata.json
[2025-11-24 23:05:53] -rwx------. 1 boincer umatlas     36292 Nov 23 06:31 runpilot2-wrapper.sh
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas       100 Nov 24 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:05:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 16:13 run_atlas
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas       105 Nov 24 16:13 job.xml
[2025-11-24 23:05:53] -rw-r--r--. 2 boincer umatlas 408115466 Nov 24 16:13 EVNT.47483658._000708.pool.root.1
[2025-11-24 23:05:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 16:13 shared
[2025-11-24 23:05:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 16:13 input.tar.gz
[2025-11-24 23:05:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:13 start_atlas.sh
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas         0 Nov 24 16:13 boinc_lockfile
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 16:13 pandaJob.out
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas        57 Nov 24 16:13 setup.sh.local
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas    991801 Nov 24 16:14 agis_schedconf.cvmfs.json
[2025-11-24 23:05:53] drwx------. 5 boincer umatlas      4096 Nov 24 16:14 pilot3
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas       532 Nov 24 22:39 boinc_task_state.xml
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas      7174 Nov 24 23:00 init_data.xml
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas 925843794 Nov 24 23:03 HITS.47556137._007034.pool.root.1
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas      1075 Nov 24 23:04 memory_monitor_summary.json
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas   1516227 Nov 24 23:04 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas   1800569 Nov 24 23:04 log.47556137._007034.job.log.tgz.1
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas        95 Nov 24 23:04 pilot_heartbeat.json
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas      7956 Nov 24 23:04 heartbeat.json
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 23:05 boinc_mmap_file
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas        29 Nov 24 23:05 wrapper_checkpoint.txt
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas      4824 Nov 24 23:05 pilotlog.txt
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas   3159695 Nov 24 23:05 log.47556137._007034.job.log.1
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas       353 Nov 24 23:05 output.list
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas       620 Nov 24 23:05 runtime_log
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas   4976640 Nov 24 23:05 result.tar.gz
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas       664 Nov 24 23:05 Yw2NDmwUNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmqKKDmzSwhYn.diag
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas      9333 Nov 24 23:05 runtime_log.err
[2025-11-24 23:05:53] -rw-r--r--. 1 boincer umatlas     21863 Nov 24 23:05 stderr.txt
[2025-11-24 23:05:53] HITS file was successfully produced:
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas 925843794 Nov 24 23:03 shared/HITS.pool.root.1
[2025-11-24 23:05:53]  *** Contents of shared directory: ***
[2025-11-24 23:05:53] total 1308164
[2025-11-24 23:05:53] -rw-r--r--. 2 boincer umatlas 408115466 Nov 24 16:13 ATLAS.root_0
[2025-11-24 23:05:53] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 16:13 input.tar.gz
[2025-11-24 23:05:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:13 start_atlas.sh
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas 925843794 Nov 24 23:03 HITS.pool.root.1
[2025-11-24 23:05:53] -rw-------. 1 boincer umatlas   4976640 Nov 24 23:05 result.tar.gz
23:06:14 (521830): run_atlas exited; CPU time 137975.573512
23:06:14 (521830): called boinc_finish(0)

</stderr_txt>
]]>

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