Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:09:13 (9748): wrapper (7.7.26015): starting
03:09:13 (9748): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:09:14] Arguments: --nthreads 8
[2025-11-27 03:09:14] Threads: 8
[2025-11-27 03:09:14] Checking for CVMFS
[2025-11-27 03:09:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:09:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:09:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:09:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:09:16] 2.11.2.0 22643 147097 140620 153342 2 85 24108171 25165825 1288 130560 9 45249044 99.866 27612957 1899 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 03:09:16] CVMFS is ok
[2025-11-27 03:09:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:09:16] Checking for apptainer binary...
[2025-11-27 03:09:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:09:16] Running /usr/bin/apptainer --version
[2025-11-27 03:09:16] apptainer version 1.3.2-1.el7
[2025-11-27 03:09:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:09:33] cg-vwn227.simple-grid.lan
[2025-11-27 03:09:33] apptainer works
[2025-11-27 03:09:33] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:09:33] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:09:33] Starting ATLAS job with PandaID=6895361841
[2025-11-27 03:09:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:36:14]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:36:14] 2025-11-28 01:35:26,380 | INFO     | monitor loop #5670: job 0:6895361841 is in state 'finished'
[2025-11-28 02:36:14] 2025-11-28 01:35:26,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:36:14] 2025-11-28 01:35:26,600 | INFO     | time since job start (84125s) is within the limit (172800.0s)
[2025-11-28 02:36:14] 2025-11-28 01:35:28,617 | INFO     | time since job start (84127s) is within the limit (172800.0s)
[2025-11-28 02:36:14] 2025-11-28 01:35:28,893 | INFO     | monitor loop #5671: job 0:6895361841 is in state 'finished'
[2025-11-28 02:36:14] 2025-11-28 01:35:28,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:36:14] 2025-11-28 01:35:30,629 | INFO     | time since job start (84129s) is within the limit (172800.0s)
[2025-11-28 02:36:14] 2025-11-28 01:35:31,399 | INFO     | monitor loop #5672: job 0:6895361841 is in state 'finished'
[2025-11-28 02:36:14] 2025-11-28 01:35:31,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:36:14] 2025-11-28 01:35:32,635 | INFO     | time since job start (84131s) is within the limit (172800.0s)
[2025-11-28 02:36:14] 2025-11-28 01:35:33,909 | INFO     | monitor loop #5673: job 0:6895361841 is in state 'finished'
[2025-11-28 02:36:14] 2025-11-28 01:35:33,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:36:14] 2025-11-28 01:35:34,643 | INFO     | time since job start (84133s) is within the limit (172800.0s)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,202 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 02:36:14] 2025-11-28 01:35:36,203 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 02:36:14] 2025-11-28 01:35:36,205 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895361841/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,206 | INFO     | extracted standard info from prmon json
[2025-11-28 02:36:14] 2025-11-28 01:35:36,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:36:14] 2025-11-28 01:35:36,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:36:14] 2025-11-28 01:35:36,260 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:36:14] 2025-11-28 01:35:36,262 | INFO     | sum of square deviations: 797333731108.0492
[2025-11-28 02:36:14] 2025-11-28 01:35:36,328 | INFO     | sum of deviations: 3200022321328.3545
[2025-11-28 02:36:14] 2025-11-28 01:35:36,329 | INFO     | mean x: 1764251865.568613
[2025-11-28 02:36:14] 2025-11-28 01:35:36,329 | INFO     | mean y: 2836890.980291971
[2025-11-28 02:36:14] 2025-11-28 01:35:36,329 | INFO     | intersect: -7077818460.724243
[2025-11-28 02:36:14] 2025-11-28 01:35:36,331 | INFO     | chi2: 23.60483979264012
[2025-11-28 02:36:14] 2025-11-28 01:35:36,333 | INFO     | sum of square deviations: 788636070349.8197
[2025-11-28 02:36:14] 2025-11-28 01:35:36,403 | INFO     | sum of deviations: 3654518347333.6816
[2025-11-28 02:36:14] 2025-11-28 01:35:36,404 | INFO     | mean x: 1764251713.0725274
[2025-11-28 02:36:14] 2025-11-28 01:35:36,404 | INFO     | mean y: 2844858.972893773
[2025-11-28 02:36:14] 2025-11-28 01:35:36,404 | INFO     | intersect: -8172650147.08038
[2025-11-28 02:36:14] 2025-11-28 01:35:36,406 | INFO     | chi2: 20.379763702020643
[2025-11-28 02:36:14] 2025-11-28 01:35:36,406 | INFO     | current chi2=20.379763702020643 (change=13.662774748528653 %)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,406 | INFO     | right removable region: 1364
[2025-11-28 02:36:14] 2025-11-28 01:35:36,408 | INFO     | sum of square deviations: 788635177309.8196
[2025-11-28 02:36:14] 2025-11-28 01:35:36,427 | INFO     | monitor loop #5674: job 0:6895361841 is in state 'finished'
[2025-11-28 02:36:14] 2025-11-28 01:35:36,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,480 | INFO     | sum of deviations: 2631783329185.381
[2025-11-28 02:36:14] 2025-11-28 01:35:36,480 | INFO     | mean x: 1764252018.0725274
[2025-11-28 02:36:14] 2025-11-28 01:35:36,481 | INFO     | mean y: 2846852.7435897435
[2025-11-28 02:36:14] 2025-11-28 01:35:36,481 | INFO     | intersect: -5884703161.806249
[2025-11-28 02:36:14] 2025-11-28 01:35:36,482 | INFO     | chi2: 18.95909441261431
[2025-11-28 02:36:14] 2025-11-28 01:35:36,483 | INFO     | current chi2=18.95909441261431 (change=19.681325613039462 %)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,483 | INFO     | left removable region: 10
[2025-11-28 02:36:14] 2025-11-28 01:35:36,485 | INFO     | sum of square deviations: 769722586413.5626
[2025-11-28 02:36:14] 2025-11-28 01:35:36,546 | INFO     | sum of deviations: 2695456860139.211
[2025-11-28 02:36:14] 2025-11-28 01:35:36,547 | INFO     | mean x: 1764251987.5812407
[2025-11-28 02:36:14] 2025-11-28 01:35:36,547 | INFO     | mean y: 2865472.8980797636
[2025-11-28 02:36:14] 2025-11-28 01:35:36,547 | INFO     | intersect: -6175289107.569225
[2025-11-28 02:36:14] 2025-11-28 01:35:36,549 | INFO     | chi2: 11.495377154221428
[2025-11-28 02:36:14] 2025-11-28 01:35:36,549 | INFO     | current memory leak: 3.50 B/s (using 1354 data points, chi2=11.50)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | ..............................
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | . Timing measurements:
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | . get job = 0 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | . initial setup = 7 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | . payload setup = 160 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,551 | INFO     | . stage-in = 0 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,552 | INFO     | . payload execution = 83677 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,552 | INFO     | . stage-out = 5 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,552 | INFO     | . log creation = 2 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,552 | INFO     | ..............................
[2025-11-28 02:36:14] 2025-11-28 01:35:36,652 | INFO     | time since job start (84135s) is within the limit (172800.0s)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | 
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | job summary report
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | --------------------------------------------------
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | PanDA job id: 6895361841
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | task id: 47556137
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | errors: (none)
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:36:14] 2025-11-28 01:35:36,677 | INFO     | pilot state: finished 
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | transexitcode: 0
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | exeerrorcode: 0
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | exeerrordiag: 
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | exitcode: 0
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | exitmsg: OK
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | cpuconsumptiontime: 314991 s
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | nevents: 1000
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | neventsw: 0
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | pid: 20132
[2025-11-28 02:36:14] 2025-11-28 01:35:36,678 | INFO     | pgrp: 20132
[2025-11-28 02:36:14] 2025-11-28 01:35:36,679 | INFO     | corecount: 8
[2025-11-28 02:36:14] 2025-11-28 01:35:36,679 | INFO     | event service: False
[2025-11-28 02:36:14] 2025-11-28 01:35:36,679 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 44: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 87: 2284722, 91: 2285292, 98
[2025-11-28 02:36:14] 2025-11-28 01:35:36,679 | INFO     | --------------------------------------------------
[2025-11-28 02:36:14] 2025-11-28 01:35:36,679 | INFO     | 
[2025-11-28 02:36:14] 2025-11-28 01:35:36,679 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 02:36:14] 2025-11-28 01:35:37,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:36:14] 2025-11-28 01:35:37,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:36:14] 2025-11-28 01:35:37,030 | INFO     | job 6895361841 has completed (purged errors)
[2025-11-28 02:36:14] 2025-11-28 01:35:37,030 | INFO     | overall cleanup function is called
[2025-11-28 02:36:14] 2025-11-28 01:35:38,045 | INFO     | --- collectZombieJob: --- 10, [20132]
[2025-11-28 02:36:14] 2025-11-28 01:35:38,046 | INFO     | zombie collector waiting for pid 20132
[2025-11-28 02:36:14] 2025-11-28 01:35:38,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:36:14] 2025-11-28 01:35:38,046 | INFO     | collected zombie processes
[2025-11-28 02:36:14] 2025-11-28 01:35:38,046 | INFO     | will attempt to kill all subprocesses of pid=20132
[2025-11-28 02:36:14] 2025-11-28 01:35:38,167 | INFO     | process IDs to be killed: [20132] (in reverse order)
[2025-11-28 02:36:14] 2025-11-28 01:35:38,682 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:36:14] 2025-11-28 01:35:38,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:36:14] 2025-11-28 01:35:38,686 | INFO     | did not find any defunct processes belonging to 20132
[2025-11-28 02:36:14] 2025-11-28 01:35:38,692 | INFO     | did not find any defunct processes belonging to 20132
[2025-11-28 02:36:14] 2025-11-28 01:35:38,761 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:36:14] 2025-11-28 01:35:38,761 | INFO     | ready for new job
[2025-11-28 02:36:14] 2025-11-28 01:35:38,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:36:14] 2025-11-28 01:35:38,766 | INFO     | ***************************************
[2025-11-28 02:36:14] 2025-11-28 01:35:38,766 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:36:14] 2025-11-28 01:35:38,766 | INFO     | ***************************************
[2025-11-28 02:36:14] 2025-11-28 01:35:38,767 | INFO     | 
[2025-11-28 02:36:14] 2025-11-28 01:35:38,767 | INFO     | pilot is running in a VM
[2025-11-28 02:36:14] 2025-11-28 01:35:38,767 | INFO     | architecture information:
[2025-11-28 02:36:14] 2025-11-28 01:35:38,768 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:36:14] 2025-11-28 01:35:39,051 | INFO     | cat /etc/os-release:
[2025-11-28 02:36:14] NAME="CentOS Linux"
[2025-11-28 02:36:14] VERSION="7 (Core)"
[2025-11-28 02:36:14] ID="centos"
[2025-11-28 02:36:14] ID_LIKE="rhel fedora"
[2025-11-28 02:36:14] VERSION_ID="7"
[2025-11-28 02:36:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:36:14] ANSI_COLOR="0;31"
[2025-11-28 02:36:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:36:14] HOME_URL="https://www.centos.org/"
[2025-11-28 02:36:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:36:14] 
[2025-11-28 02:36:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:36:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:36:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:36:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:36:14] 
[2025-11-28 02:36:14] 2025-11-28 01:35:39,051 | INFO     | ***************************************
[2025-11-28 02:36:14] 2025-11-28 01:35:39,555 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 02:36:14] 2025-11-28 01:35:39,716 | INFO     | sufficient remaining disk space (495548628992 B)
[2025-11-28 02:36:14] 2025-11-28 01:35:39,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:36:14] 2025-11-28 01:35:39,717 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:36:14] 2025-11-28 01:35:39,717 | INFO     | update_server=False
[2025-11-28 02:36:14] 2025-11-28 01:35:39,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:36:14] 2025-11-28 01:35:39,806 | INFO     | all data control threads have been joined
[2025-11-28 02:36:14] 2025-11-28 01:35:39,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:36:14] 2025-11-28 01:35:39,976 | INFO     | aborting loop
[2025-11-28 02:36:14] 2025-11-28 01:35:40,650 | INFO     | all job control threads have been joined
[2025-11-28 02:36:14] 2025-11-28 01:35:40,724 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:40,726 | INFO     | all payload control threads have been joined
[2025-11-28 02:36:14] 2025-11-28 01:35:40,728 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:40,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:36:14] 2025-11-28 01:35:40,813 | INFO     | [data] control thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:40,982 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,006 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,007 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:36:14] 2025-11-28 01:35:41,467 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,480 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,657 | INFO     | [job] control thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:41,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:36:14] 2025-11-28 01:35:41,733 | INFO     | [payload] control thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:42,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:42,194 | INFO     | [job] validate thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:42,703 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:43,096 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:44,762 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:36:14] 2025-11-28 01:35:47,247 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:36:14] 2025-11-28 01:35:48,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140598885168960)>', '<ExcThread(monitor, started 140598237460224)>']
[2025-11-28 02:36:14] 2025-11-28 01:35:53,284 | INFO     | all workflow threads have been joined
[2025-11-28 02:36:14] 2025-11-28 01:35:53,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:36:14] 2025-11-28 01:35:53,285 | INFO     | traces error code: 0
[2025-11-28 02:36:14] 2025-11-28 01:35:53,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:36:14] 2025-11-28 01:36:09,817 | INFO     | PID=13550 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:36:14] 2025-11-28 01:36:09,818 | INFO     | .. there are 9 such processes running
[2025-11-28 02:36:14] 2025-11-28 01:36:09,818 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:36:14] 2025-11-28 01:36:09,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:36:14] 2025-11-28 01:36:09,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:36:14] 2025-11-28 01:36:09,818 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:36:14] 2025-11-28 01:36:09,818 | INFO     | [monitor] control thread has ended
[2025-11-28 02:36:14] 2025-11-28 01:36:10,194 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:36:14] 2025-11-28 01:36:10,276 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:36:14] 2025-11-28 01:36:10,328 [wrapper] pilotpid: 13550
[2025-11-28 02:36:14] 2025-11-28 01:36:10,375 [wrapper] Pilot exit status: 0
[2025-11-28 02:36:14] 2025-11-28 01:36:10,697 [wrapper] pandaids: 6895361841
[2025-11-28 02:36:14] 2025-11-28 01:36:11,458 [wrapper] cleanup supervisor_pilot  6057 13551
[2025-11-28 02:36:14] 2025-11-28 01:36:11,581 [wrapper] Test setup, not cleaning
[2025-11-28 02:36:14] 2025-11-28 01:36:11,685 [wrapper] apfmon messages muted
[2025-11-28 02:36:14] 2025-11-28 01:36:11,811 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:36:14] 2025-11-28 01:36:11,918 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:36:14]  *** Error codes and diagnostics ***
[2025-11-28 02:36:14]     "exeErrorCode": 0,
[2025-11-28 02:36:14]     "exeErrorDiag": "",
[2025-11-28 02:36:14]     "pilotErrorCode": 0,
[2025-11-28 02:36:14]     "pilotErrorDiag": "",
[2025-11-28 02:36:14]  *** Listing of results directory ***
[2025-11-28 02:36:14] total 1329888
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-28 02:36:14] -rwx------. 1 boinc boinc     36292 Nov 23 15:37 runpilot2-wrapper.sh
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc      5112 Nov 23 15:38 queuedata.json
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc       100 Nov 27 03:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:36:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 03:09 run_atlas
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc       105 Nov 27 03:09 job.xml
[2025-11-28 02:36:14] -rw-r--r--. 2 boinc boinc 406625929 Nov 27 03:09 EVNT.47483658._000766.pool.root.1
[2025-11-28 02:36:14] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:09 start_atlas.sh
[2025-11-28 02:36:14] drwxrwx--x. 2 boinc boinc        68 Nov 27 03:09 shared
[2025-11-28 02:36:14] -rw-r--r--. 2 boinc boinc    590104 Nov 27 03:09 input.tar.gz
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc      6392 Nov 27 03:09 init_data.xml
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc         0 Nov 27 03:09 boinc_lockfile
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc      2785 Nov 27 03:09 pandaJob.out
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc    991530 Nov 27 03:13 agis_schedconf.cvmfs.json
[2025-11-28 02:36:14] drwx------. 5 boinc boinc      4096 Nov 27 03:13 pilot3
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc       533 Nov 28 02:10 boinc_task_state.xml
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc 923938442 Nov 28 02:33 HITS.47556137._007615.pool.root.1
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc      1029 Nov 28 02:33 memory_monitor_summary.json
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc   1516240 Nov 28 02:33 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc   2451020 Nov 28 02:33 log.47556137._007615.job.log.tgz.1
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc        95 Nov 28 02:35 pilot_heartbeat.json
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc      8623 Nov 28 02:35 heartbeat.json
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc       820 Nov 28 02:36 pilotlog.txt
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc  11217232 Nov 28 02:36 log.47556137._007615.job.log.1
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc        29 Nov 28 02:36 wrapper_checkpoint.txt
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc      8192 Nov 28 02:36 boinc_mmap_file
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc       353 Nov 28 02:36 output.list
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc       620 Nov 28 02:36 runtime_log
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc  13690880 Nov 28 02:36 result.tar.gz
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc       662 Nov 28 02:36 TYgNDm0OQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1ZIKDmGmKNBn.diag
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc      8817 Nov 28 02:36 runtime_log.err
[2025-11-28 02:36:14] -rw-r--r--. 1 boinc boinc     21437 Nov 28 02:36 stderr.txt
[2025-11-28 02:36:14] HITS file was successfully produced:
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc 923938442 Nov 28 02:33 shared/HITS.pool.root.1
[2025-11-28 02:36:14]  *** Contents of shared directory: ***
[2025-11-28 02:36:14] total 1313348
[2025-11-28 02:36:14] -rw-r--r--. 2 boinc boinc 406625929 Nov 27 03:09 ATLAS.root_0
[2025-11-28 02:36:14] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:09 start_atlas.sh
[2025-11-28 02:36:14] -rw-r--r--. 2 boinc boinc    590104 Nov 27 03:09 input.tar.gz
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc 923938442 Nov 28 02:33 HITS.pool.root.1
[2025-11-28 02:36:14] -rw-------. 1 boinc boinc  13690880 Nov 28 02:36 result.tar.gz
02:36:16 (9748): run_atlas exited; CPU time 315524.372954
02:36:16 (9748): called boinc_finish(0)

</stderr_txt>
]]>

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