Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:22:09 (569157): wrapper (7.7.26015): starting
19:22:09 (569157): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 19:22:09] Arguments: --nthreads 8
[2025-11-24 19:22:09] Threads: 8
[2025-11-24 19:22:09] Checking for CVMFS
[2025-11-24 19:22:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 19:22:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 19:22:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 19:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 19:22:11] 2.13.3.0 13693 27882 339608 153264 0 138 30010103 40960000 22901 16776704 0 77269420 99.604 82718680 37463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 19:22:11] CVMFS is ok
[2025-11-24 19:22:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 19:22:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 19:22:11] Further information can be found at the LHC@home message board.
[2025-11-24 19:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 19:22:11] Checking for apptainer binary...
[2025-11-24 19:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 19:22:11] Running /usr/bin/apptainer --version
[2025-11-24 19:22:11] apptainer version 1.4.4-1.el9
[2025-11-24 19:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 19:22:12] c6-5-37-3.aglt2.org
[2025-11-24 19:22:12] apptainer works
[2025-11-24 19:22:12] Set ATHENA_PROC_NUMBER=8
[2025-11-24 19:22:12] Set ATHENA_CORE_NUMBER=8
[2025-11-24 19:22:12] Starting ATLAS job with PandaID=6894053167
[2025-11-24 19:22:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:30:47]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:30:47] 2025-11-25 09:30:08,918 | INFO     | maximum number of monitored processes: 6
[2025-11-25 04:30:47] 2025-11-25 09:30:09,494 | INFO     | time since job start (32793s) is within the limit (172800.0s)
[2025-11-25 04:30:47] 2025-11-25 09:30:11,422 | INFO     | monitor loop #2108: job 0:6894053167 is in state 'finished'
[2025-11-25 04:30:47] 2025-11-25 09:30:11,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:30:47] 2025-11-25 09:30:11,506 | INFO     | time since job start (32795s) is within the limit (172800.0s)
[2025-11-25 04:30:47] 2025-11-25 09:30:13,512 | INFO     | time since job start (32797s) is within the limit (172800.0s)
[2025-11-25 04:30:47] 2025-11-25 09:30:13,927 | INFO     | monitor loop #2109: job 0:6894053167 is in state 'finished'
[2025-11-25 04:30:47] 2025-11-25 09:30:13,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,409 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 04:30:47] 2025-11-25 09:30:14,417 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2973.2009642857147
[2025-11-25 04:30:47] 2025-11-25 09:30:14,426 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894053167/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,426 | INFO     | extracted standard info from prmon json
[2025-11-25 04:30:47] 2025-11-25 09:30:14,426 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:30:47] 2025-11-25 09:30:14,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:30:47] 2025-11-25 09:30:14,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 04:30:47] 2025-11-25 09:30:14,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 04:30:47] 2025-11-25 09:30:14,434 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:30:47] 2025-11-25 09:30:14,435 | INFO     | sum of square deviations: 47480950419.48405
[2025-11-25 04:30:47] 2025-11-25 09:30:14,441 | INFO     | sum of deviations: 145882003339.23926
[2025-11-25 04:30:47] 2025-11-25 09:30:14,441 | INFO     | mean x: 1764046680.175701
[2025-11-25 04:30:47] 2025-11-25 09:30:14,441 | INFO     | mean y: 2580851.2953271028
[2025-11-25 04:30:47] 2025-11-25 09:30:14,441 | INFO     | intersect: -5417333059.744745
[2025-11-25 04:30:47] 2025-11-25 09:30:14,442 | INFO     | chi2: 4.090188410780857
[2025-11-25 04:30:47] 2025-11-25 09:30:14,442 | INFO     | sum of square deviations: 46162079941.8283
[2025-11-25 04:30:47] 2025-11-25 09:30:14,447 | INFO     | sum of deviations: 178803797804.85086
[2025-11-25 04:30:47] 2025-11-25 09:30:14,448 | INFO     | mean x: 1764046527.6773584
[2025-11-25 04:30:47] 2025-11-25 09:30:14,448 | INFO     | mean y: 2584627.379245283
[2025-11-25 04:30:47] 2025-11-25 09:30:14,448 | INFO     | intersect: -6830257806.294663
[2025-11-25 04:30:47] 2025-11-25 09:30:14,448 | INFO     | chi2: 3.412072170629799
[2025-11-25 04:30:47] 2025-11-25 09:30:14,449 | INFO     | current chi2=3.412072170629799 (change=16.579095436378662 %)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,449 | INFO     | right removable region: 529
[2025-11-25 04:30:47] 2025-11-25 09:30:14,449 | INFO     | sum of square deviations: 46162087380.53039
[2025-11-25 04:30:47] 2025-11-25 09:30:14,454 | INFO     | sum of deviations: -4796528001.118874
[2025-11-25 04:30:47] 2025-11-25 09:30:14,455 | INFO     | mean x: 1764046832.673585
[2025-11-25 04:30:47] 2025-11-25 09:30:14,455 | INFO     | mean y: 2598251.941509434
[2025-11-25 04:30:47] 2025-11-25 09:30:14,455 | INFO     | intersect: 185893690.00206387
[2025-11-25 04:30:47] 2025-11-25 09:30:14,455 | INFO     | chi2: 1.306981218246864
[2025-11-25 04:30:47] 2025-11-25 09:30:14,456 | INFO     | current chi2=1.306981218246864 (change=68.04594099377078 %)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,456 | INFO     | sum of square deviations: 44867876578.57173
[2025-11-25 04:30:47] 2025-11-25 09:30:14,461 | INFO     | sum of deviations: -43839323626.514275
[2025-11-25 04:30:47] 2025-11-25 09:30:14,461 | INFO     | mean x: 1764046985.1714287
[2025-11-25 04:30:47] 2025-11-25 09:30:14,462 | INFO     | mean y: 2602845.805714286
[2025-11-25 04:30:47] 2025-11-25 09:30:14,462 | INFO     | intersect: 1726210749.1099913
[2025-11-25 04:30:47] 2025-11-25 09:30:14,462 | INFO     | chi2: 1.1095043092212518
[2025-11-25 04:30:47] 2025-11-25 09:30:14,462 | INFO     | current chi2=1.1095043092212518 (change=15.109391494584786 %)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,463 | INFO     | left removable region: 20
[2025-11-25 04:30:47] 2025-11-25 09:30:14,463 | INFO     | sum of square deviations: 40889307492.12956
[2025-11-25 04:30:47] 2025-11-25 09:30:14,468 | INFO     | sum of deviations: -22249808473.764206
[2025-11-25 04:30:47] 2025-11-25 09:30:14,468 | INFO     | mean x: 1764047107.1709235
[2025-11-25 04:30:47] 2025-11-25 09:30:14,468 | INFO     | mean y: 2608403.583497053
[2025-11-25 04:30:47] 2025-11-25 09:30:14,468 | INFO     | intersect: 962509969.0674734
[2025-11-25 04:30:47] 2025-11-25 09:30:14,469 | INFO     | chi2: 0.39192724519287697
[2025-11-25 04:30:47] 2025-11-25 09:30:14,469 | INFO     | current memory leak: -0.54 B/s (using 509 data points, chi2=0.39)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,470 | INFO     | could have reported an average CPU frequency of 2922 MHz (21 samples)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,470 | INFO     | ..............................
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . Timing measurements:
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . get job = 0 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . initial setup = 6 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . payload setup = 53 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . stage-in = 0 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . payload execution = 32643 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . stage-out = 2 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | . log creation = 0 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,471 | INFO     | ..............................
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | 
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | job summary report
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | --------------------------------------------------
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | PanDA job id: 6894053167
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | task id: 47523618
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | errors: (none)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | pilot state: finished 
[2025-11-25 04:30:47] 2025-11-25 09:30:14,549 | INFO     | transexitcode: 0
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | exeerrorcode: 0
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | exeerrordiag: 
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | exitcode: 0
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | exitmsg: OK
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | cpuconsumptiontime: 73828 s
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | nevents: 400
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | neventsw: 0
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | pid: 584336
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | pgrp: 584336
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | corecount: 8
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | event service: False
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | sizes: {0: 2283773, 1: 2283801, 2: 2283972, 13: 2284000, 25: 2284056, 36: 2284502, 47: 2284502, 32701: 2324063, 32705: 2333066, 32706: 2333122, 32713: 2333316}
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | --------------------------------------------------
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | 
[2025-11-25 04:30:47] 2025-11-25 09:30:14,550 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 04:30:47] 2025-11-25 09:30:14,570 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:30:47] 2025-11-25 09:30:14,573 | INFO     | job 6894053167 has completed (purged errors)
[2025-11-25 04:30:47] 2025-11-25 09:30:14,574 | INFO     | overall cleanup function is called
[2025-11-25 04:30:47] 2025-11-25 09:30:15,581 | INFO     | --- collectZombieJob: --- 10, [584336]
[2025-11-25 04:30:47] 2025-11-25 09:30:15,582 | INFO     | zombie collector waiting for pid 584336
[2025-11-25 04:30:47] 2025-11-25 09:30:15,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:30:47] 2025-11-25 09:30:15,582 | INFO     | collected zombie processes
[2025-11-25 04:30:47] 2025-11-25 09:30:15,582 | INFO     | will attempt to kill all subprocesses of pid=584336
[2025-11-25 04:30:47] 2025-11-25 09:30:15,938 | INFO     | process IDs to be killed: [584336] (in reverse order)
[2025-11-25 04:30:47] 2025-11-25 09:30:16,056 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:30:47] 2025-11-25 09:30:16,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:30:47] 2025-11-25 09:30:16,069 | INFO     | did not find any defunct processes belonging to 584336
[2025-11-25 04:30:47] 2025-11-25 09:30:16,082 | INFO     | did not find any defunct processes belonging to 584336
[2025-11-25 04:30:47] 2025-11-25 09:30:16,083 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:30:47] 2025-11-25 09:30:16,083 | INFO     | ready for new job
[2025-11-25 04:30:47] 2025-11-25 09:30:16,083 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:30:47] 2025-11-25 09:30:16,086 | INFO     | ***************************************
[2025-11-25 04:30:47] 2025-11-25 09:30:16,087 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:30:47] 2025-11-25 09:30:16,087 | INFO     | ***************************************
[2025-11-25 04:30:47] 2025-11-25 09:30:16,087 | INFO     | 
[2025-11-25 04:30:47] 2025-11-25 09:30:16,090 | INFO     | architecture information:
[2025-11-25 04:30:47] 2025-11-25 09:30:16,090 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:30:47] 2025-11-25 09:30:16,131 | INFO     | cat /etc/os-release:
[2025-11-25 04:30:47] NAME="CentOS Linux"
[2025-11-25 04:30:47] VERSION="7 (Core)"
[2025-11-25 04:30:47] ID="centos"
[2025-11-25 04:30:47] ID_LIKE="rhel fedora"
[2025-11-25 04:30:47] VERSION_ID="7"
[2025-11-25 04:30:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:30:47] ANSI_COLOR="0;31"
[2025-11-25 04:30:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:30:47] HOME_URL="https://www.centos.org/"
[2025-11-25 04:30:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:30:47] 
[2025-11-25 04:30:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:30:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:30:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:30:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:30:47] 
[2025-11-25 04:30:47] 2025-11-25 09:30:16,131 | INFO     | ***************************************
[2025-11-25 04:30:47] 2025-11-25 09:30:16,636 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 04:30:47] 2025-11-25 09:30:16,658 | INFO     | sufficient remaining disk space (72836186112 B)
[2025-11-25 04:30:47] 2025-11-25 09:30:16,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:30:47] 2025-11-25 09:30:16,658 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:30:47] 2025-11-25 09:30:16,658 | INFO     | update_server=False
[2025-11-25 04:30:47] 2025-11-25 09:30:16,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:30:47] 2025-11-25 09:30:16,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:30:47] 2025-11-25 09:30:16,866 | INFO     | all payload control threads have been joined
[2025-11-25 04:30:47] 2025-11-25 09:30:16,953 | INFO     | all data control threads have been joined
[2025-11-25 04:30:47] 2025-11-25 09:30:17,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:30:47] 2025-11-25 09:30:17,453 | INFO     | aborting loop
[2025-11-25 04:30:47] 2025-11-25 09:30:17,663 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:17,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:17,843 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:17,872 | INFO     | [payload] control thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:17,958 | INFO     | [data] control thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:17,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:30:47] 2025-11-25 09:30:18,091 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:18,112 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:18,189 | INFO     | all job control threads have been joined
[2025-11-25 04:30:47] 2025-11-25 09:30:18,459 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:18,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:18,630 | INFO     | [job] validate thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:18,655 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:18,665 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:19,028 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:19,195 | INFO     | [job] control thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:19,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:30:47] 2025-11-25 09:30:20,569 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:21,984 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:30:47] 2025-11-25 09:30:34,620 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:30:47] 2025-11-25 09:30:35,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757385553728)>', '<ExcThread(monitor, started 139756759414528)>']
[2025-11-25 04:30:47] 2025-11-25 09:30:40,872 | INFO     | all workflow threads have been joined
[2025-11-25 04:30:47] 2025-11-25 09:30:40,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:30:47] 2025-11-25 09:30:40,873 | INFO     | traces error code: 0
[2025-11-25 04:30:47] 2025-11-25 09:30:40,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:30:47] 2025-11-25 09:30:47,151 | INFO     | PID=575564 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 04:30:47] 2025-11-25 09:30:47,151 | INFO     | .. there are 30 such processes running
[2025-11-25 04:30:47] 2025-11-25 09:30:47,151 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:30:47] 2025-11-25 09:30:47,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:30:47] 2025-11-25 09:30:47,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:30:47] 2025-11-25 09:30:47,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:30:47] 2025-11-25 09:30:47,152 | INFO     | [monitor] control thread has ended
[2025-11-25 04:30:47] 2025-11-25 09:30:47,441 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:30:47] 2025-11-25 09:30:47,445 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:30:47] 2025-11-25 09:30:47,448 [wrapper] pilotpid: 575564
[2025-11-25 04:30:47] 2025-11-25 09:30:47,450 [wrapper] Pilot exit status: 0
[2025-11-25 04:30:47] 2025-11-25 09:30:47,463 [wrapper] pandaids: 6894053167
[2025-11-25 04:30:47] 2025-11-25 09:30:47,538 [wrapper] cleanup supervisor_pilot 2102437 575565
[2025-11-25 04:30:47] 2025-11-25 09:30:47,543 [wrapper] Test setup, not cleaning
[2025-11-25 04:30:47] 2025-11-25 09:30:47,546 [wrapper] apfmon messages muted
[2025-11-25 04:30:47] 2025-11-25 09:30:47,549 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:30:47] 2025-11-25 09:30:47,552 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:30:47]  *** Error codes and diagnostics ***
[2025-11-25 04:30:47]     "exeErrorCode": 0,
[2025-11-25 04:30:47]     "exeErrorDiag": "",
[2025-11-25 04:30:47]     "pilotErrorCode": 0,
[2025-11-25 04:30:47]     "pilotErrorDiag": "",
[2025-11-25 04:30:47]  *** Listing of results directory ***
[2025-11-25 04:30:47] total 614572
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 17:35 pilot3.tar.gz
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 17:41 queuedata.json
[2025-11-25 04:30:47] -rwx------. 1 boincer umatlas     36292 Nov 23 17:42 runpilot2-wrapper.sh
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas       100 Nov 24 19:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:30:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 19:22 run_atlas
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas       105 Nov 24 19:22 job.xml
[2025-11-25 04:30:47] -rw-r--r--. 2 boincer umatlas 308463861 Nov 24 19:22 EVNT.47523616._000005.pool.root.1
[2025-11-25 04:30:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 19:22 start_atlas.sh
[2025-11-25 04:30:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 19:22 shared
[2025-11-25 04:30:47] -rw-r--r--. 2 boincer umatlas    589951 Nov 24 19:22 input.tar.gz
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas         0 Nov 24 19:22 boinc_lockfile
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas      2612 Nov 24 19:22 pandaJob.out
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas        57 Nov 24 19:22 setup.sh.local
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas    991801 Nov 24 19:23 agis_schedconf.cvmfs.json
[2025-11-25 04:30:47] drwx------. 5 boincer umatlas      4096 Nov 24 19:23 pilot3
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 04:22 init_data.xml
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas 307115450 Nov 25 04:28 HITS.47523618._000113.pool.root.1
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas       531 Nov 25 04:28 boinc_task_state.xml
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas        95 Nov 25 04:29 pilot_heartbeat.json
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas      1042 Nov 25 04:29 memory_monitor_summary.json
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas   1516240 Nov 25 04:30 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas    699909 Nov 25 04:30 log.47523618._000113.job.log.tgz.1
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas      7812 Nov 25 04:30 heartbeat.json
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 04:30 boinc_mmap_file
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas        28 Nov 25 04:30 wrapper_checkpoint.txt
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas       822 Nov 25 04:30 pilotlog.txt
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas   4217154 Nov 25 04:30 log.47523618._000113.job.log.1
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas       357 Nov 25 04:30 output.list
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas       620 Nov 25 04:30 runtime_log
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas   4935680 Nov 25 04:30 result.tar.gz
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas       659 Nov 25 04:30 YYNKDmZxXh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7FLKDmqlqzXo.diag
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 04:30 runtime_log.err
[2025-11-25 04:30:47] -rw-r--r--. 1 boincer umatlas     21504 Nov 25 04:30 stderr.txt
[2025-11-25 04:30:47] HITS file was successfully produced:
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas 307115450 Nov 25 04:28 shared/HITS.pool.root.1
[2025-11-25 04:30:47]  *** Contents of shared directory: ***
[2025-11-25 04:30:47] total 606576
[2025-11-25 04:30:47] -rw-r--r--. 2 boincer umatlas 308463861 Nov 24 19:22 ATLAS.root_0
[2025-11-25 04:30:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 19:22 start_atlas.sh
[2025-11-25 04:30:47] -rw-r--r--. 2 boincer umatlas    589951 Nov 24 19:22 input.tar.gz
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas 307115450 Nov 25 04:28 HITS.pool.root.1
[2025-11-25 04:30:47] -rw-------. 1 boincer umatlas   4935680 Nov 25 04:30 result.tar.gz
04:30:48 (569157): run_atlas exited; CPU time 75035.253357
04:30:48 (569157): called boinc_finish(0)

</stderr_txt>
]]>

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