Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:52 (1631806): wrapper (7.7.26015): starting
00:00:52 (1631806): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:00:52] Arguments: --nthreads 12
[2025-11-25 00:00:52] Threads: 12
[2025-11-25 00:00:52] Checking for CVMFS
[2025-11-25 00:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:56] 2.13.2.0 8058 33951 294732 153270 2 356 23460822 40960000 12742 16776704 0 35052917 99.721 24069534 35432 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:00:56] CVMFS is ok
[2025-11-25 00:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:56] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:56] Checking for apptainer binary...
[2025-11-25 00:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:56] Running /usr/bin/apptainer --version
[2025-11-25 00:00:56] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:57] c-210-33-3.aglt2.org
[2025-11-25 00:00:57] apptainer works
[2025-11-25 00:00:57] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:00:57] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:00:57] Starting ATLAS job with PandaID=6895372794
[2025-11-25 00:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:14:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:14:54] 2025-11-26 14:13:49,593 | INFO     | monitor loop #6865: job 0:6895372794 is in state 'finished'
[2025-11-26 09:14:54] 2025-11-26 14:13:49,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:14:54] 2025-11-26 14:13:51,520 | INFO     | time since job start (119484s) is within the limit (172800.0s)
[2025-11-26 09:14:54] 2025-11-26 14:13:52,099 | INFO     | monitor loop #6866: job 0:6895372794 is in state 'finished'
[2025-11-26 09:14:54] 2025-11-26 14:13:52,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:14:54] 2025-11-26 14:13:53,526 | INFO     | time since job start (119486s) is within the limit (172800.0s)
[2025-11-26 09:14:54] 2025-11-26 14:13:54,604 | INFO     | monitor loop #6867: job 0:6895372794 is in state 'finished'
[2025-11-26 09:14:54] 2025-11-26 14:13:54,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:14:54] 2025-11-26 14:13:55,532 | INFO     | time since job start (119488s) is within the limit (172800.0s)
[2025-11-26 09:14:54] 2025-11-26 14:13:57,109 | INFO     | monitor loop #6868: job 0:6895372794 is in state 'finished'
[2025-11-26 09:14:54] 2025-11-26 14:13:57,110 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:14:54] 2025-11-26 14:13:57,542 | INFO     | time since job start (119490s) is within the limit (172800.0s)
[2025-11-26 09:14:54] 2025-11-26 14:13:59,551 | INFO     | time since job start (119492s) is within the limit (172800.0s)
[2025-11-26 09:14:54] 2025-11-26 14:13:59,614 | INFO     | monitor loop #6869: job 0:6895372794 is in state 'finished'
[2025-11-26 09:14:54] 2025-11-26 14:13:59,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:14:54] 2025-11-26 14:14:00,706 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 09:14:54] 2025-11-26 14:14:00,717 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2890.5004642857143
[2025-11-26 09:14:54] 2025-11-26 14:14:00,752 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895372794/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:14:54] 2025-11-26 14:14:00,753 | INFO     | extracted standard info from prmon json
[2025-11-26 09:14:54] 2025-11-26 14:14:00,753 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:14:54] 2025-11-26 14:14:00,753 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:14:54] 2025-11-26 14:14:00,810 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:14:54] 2025-11-26 14:14:00,817 | INFO     | sum of square deviations: 2320247365800.956
[2025-11-26 09:14:54] 2025-11-26 14:14:01,068 | INFO     | sum of deviations: 12929354062919.65
[2025-11-26 09:14:54] 2025-11-26 14:14:01,069 | INFO     | mean x: 1764106765.2157464
[2025-11-26 09:14:54] 2025-11-26 14:14:01,069 | INFO     | mean y: 3444276.972392638
[2025-11-26 09:14:54] 2025-11-26 14:14:01,069 | INFO     | intersect: -9826870071.598196
[2025-11-26 09:14:54] 2025-11-26 14:14:01,071 | INFO     | chi2: 25.46341412172555
[2025-11-26 09:14:54] 2025-11-26 14:14:01,086 | INFO     | sum of square deviations: 2302502274716.578
[2025-11-26 09:14:54] 2025-11-26 14:14:01,316 | INFO     | sum of deviations: 13728514454000.266
[2025-11-26 09:14:54] 2025-11-26 14:14:01,317 | INFO     | mean x: 1764106612.7365453
[2025-11-26 09:14:54] 2025-11-26 14:14:01,317 | INFO     | mean y: 3451143.303946694
[2025-11-26 09:14:54] 2025-11-26 14:14:01,317 | INFO     | intersect: -10514915503.839647
[2025-11-26 09:14:54] 2025-11-26 14:14:01,323 | INFO     | chi2: 22.01486196621274
[2025-11-26 09:14:54] 2025-11-26 14:14:01,323 | INFO     | current chi2=22.01486196621274 (change=13.543164867944713 %)
[2025-11-26 09:14:54] 2025-11-26 14:14:01,323 | INFO     | right removable region: 1950
[2025-11-26 09:14:54] 2025-11-26 14:14:01,330 | INFO     | sum of square deviations: 2302492232975.1567
[2025-11-26 09:14:54] 2025-11-26 14:14:01,482 | INFO     | sum of deviations: 12010588283844.305
[2025-11-26 09:14:54] 2025-11-26 14:14:01,482 | INFO     | mean x: 1764106917.7380831
[2025-11-26 09:14:54] 2025-11-26 14:14:01,482 | INFO     | mean y: 3452168.411583803
[2025-11-26 09:14:54] 2025-11-26 14:14:01,482 | INFO     | intersect: -9198733869.043911
[2025-11-26 09:14:54] 2025-11-26 14:14:01,484 | INFO     | chi2: 21.596769320876607
[2025-11-26 09:14:54] 2025-11-26 14:14:01,485 | INFO     | current chi2=21.596769320876607 (change=15.185099619260779 %)
[2025-11-26 09:14:54] 2025-11-26 14:14:01,485 | INFO     | left removable region: 10
[2025-11-26 09:14:54] 2025-11-26 14:14:01,487 | INFO     | sum of square deviations: 2263762280489.7954
[2025-11-26 09:14:54] 2025-11-26 14:14:01,598 | INFO     | sum of deviations: 12196295414692.557
[2025-11-26 09:14:54] 2025-11-26 14:14:01,598 | INFO     | mean x: 1764106887.285567
[2025-11-26 09:14:54] 2025-11-26 14:14:01,598 | INFO     | mean y: 3467047.923195876
[2025-11-26 09:14:54] 2025-11-26 14:14:01,598 | INFO     | intersect: -9500873989.057655
[2025-11-26 09:14:54] 2025-11-26 14:14:01,610 | INFO     | chi2: 14.925146762093107
[2025-11-26 09:14:54] 2025-11-26 14:14:01,610 | INFO     | current memory leak: 5.39 B/s (using 1940 data points, chi2=14.93)
[2025-11-26 09:14:54] 2025-11-26 14:14:01,611 | INFO     | could have reported an average CPU frequency of 2782 MHz (68 samples)
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | ..............................
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . Timing measurements:
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . get job = 0 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . initial setup = 6 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . payload setup = 56 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . stage-in = 0 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . payload execution = 119307 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . stage-out = 6 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | . log creation = 1 s
[2025-11-26 09:14:54] 2025-11-26 14:14:01,612 | INFO     | ..............................
[2025-11-26 09:14:54] 2025-11-26 14:14:01,687 | INFO     | PID=1636929 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:14:54] 2025-11-26 14:14:01,688 | INFO     | .. there are 12 such processes running
[2025-11-26 09:14:54] 2025-11-26 14:14:02,006 | INFO     | 
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | job summary report
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | --------------------------------------------------
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | PanDA job id: 6895372794
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | task id: 47556137
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | errors: (none)
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | pilot state: finished 
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | transexitcode: 0
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | exeerrorcode: 0
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | exeerrordiag: 
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | exitcode: 0
[2025-11-26 09:14:54] 2025-11-26 14:14:02,007 | INFO     | exitmsg: OK
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | cpuconsumptiontime: 262571 s
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | nevents: 1000
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | neventsw: 0
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | pid: 1644815
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | pgrp: 1644815
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | corecount: 12
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | event service: False
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 3: 2284394, 15: 2284394, 27: 2284422, 38: 2284578, 41: 2284868, 49: 2284896, 119367: 2364761, 119373: 2373760, 119377: 
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | --------------------------------------------------
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | 
[2025-11-26 09:14:54] 2025-11-26 14:14:02,008 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 09:14:54] 2025-11-26 14:14:02,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,060 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | job 6895372794 has completed (purged errors)
[2025-11-26 09:14:54] 2025-11-26 14:14:02,061 | INFO     | overall cleanup function is called
[2025-11-26 09:14:54] 2025-11-26 14:14:03,091 | INFO     | --- collectZombieJob: --- 10, [1644815]
[2025-11-26 09:14:54] 2025-11-26 14:14:03,092 | INFO     | zombie collector waiting for pid 1644815
[2025-11-26 09:14:54] 2025-11-26 14:14:03,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:14:54] 2025-11-26 14:14:03,092 | INFO     | collected zombie processes
[2025-11-26 09:14:54] 2025-11-26 14:14:03,092 | INFO     | will attempt to kill all subprocesses of pid=1644815
[2025-11-26 09:14:54] 2025-11-26 14:14:03,860 | INFO     | process IDs to be killed: [1644815] (in reverse order)
[2025-11-26 09:14:54] 2025-11-26 14:14:03,987 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:14:54] 2025-11-26 14:14:03,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:14:54] 2025-11-26 14:14:04,004 | INFO     | did not find any defunct processes belonging to 1644815
[2025-11-26 09:14:54] 2025-11-26 14:14:04,019 | INFO     | did not find any defunct processes belonging to 1644815
[2025-11-26 09:14:54] 2025-11-26 14:14:04,028 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:14:54] 2025-11-26 14:14:04,028 | INFO     | ready for new job
[2025-11-26 09:14:54] 2025-11-26 14:14:04,028 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:14:54] 2025-11-26 14:14:04,039 | INFO     | ***************************************
[2025-11-26 09:14:54] 2025-11-26 14:14:04,043 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:14:54] 2025-11-26 14:14:04,044 | INFO     | ***************************************
[2025-11-26 09:14:54] 2025-11-26 14:14:04,044 | INFO     | 
[2025-11-26 09:14:54] 2025-11-26 14:14:04,047 | INFO     | architecture information:
[2025-11-26 09:14:54] 2025-11-26 14:14:04,055 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:14:54] 2025-11-26 14:14:04,139 | INFO     | cat /etc/os-release:
[2025-11-26 09:14:54] NAME="CentOS Linux"
[2025-11-26 09:14:54] VERSION="7 (Core)"
[2025-11-26 09:14:54] ID="centos"
[2025-11-26 09:14:54] ID_LIKE="rhel fedora"
[2025-11-26 09:14:54] VERSION_ID="7"
[2025-11-26 09:14:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:14:54] ANSI_COLOR="0;31"
[2025-11-26 09:14:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:14:54] HOME_URL="https://www.centos.org/"
[2025-11-26 09:14:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:14:54] 
[2025-11-26 09:14:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:14:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:14:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:14:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:14:54] 
[2025-11-26 09:14:54] 2025-11-26 14:14:04,139 | INFO     | ***************************************
[2025-11-26 09:14:54] 2025-11-26 14:14:04,643 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 09:14:54] 2025-11-26 14:14:04,708 | INFO     | sufficient remaining disk space (67883761664 B)
[2025-11-26 09:14:54] 2025-11-26 14:14:04,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:14:54] 2025-11-26 14:14:04,708 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:14:54] 2025-11-26 14:14:04,709 | INFO     | update_server=False
[2025-11-26 09:14:54] 2025-11-26 14:14:04,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:14:54] 2025-11-26 14:14:04,791 | INFO     | all job control threads have been joined
[2025-11-26 09:14:54] 2025-11-26 14:14:05,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:14:54] 2025-11-26 14:14:05,682 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:14:54] 2025-11-26 14:14:05,683 | INFO     | aborting loop
[2025-11-26 09:14:54] 2025-11-26 14:14:05,714 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:05,797 | INFO     | [job] control thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:05,800 | INFO     | all data control threads have been joined
[2025-11-26 09:14:54] 2025-11-26 14:14:05,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:14:54] 2025-11-26 14:14:05,896 | INFO     | all payload control threads have been joined
[2025-11-26 09:14:54] 2025-11-26 14:14:06,026 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,069 | INFO     | [job] validate thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,257 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,718 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:14:54] 2025-11-26 14:14:06,762 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,806 | INFO     | [data] control thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,848 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:06,902 | INFO     | [payload] control thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:07,076 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:07,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:07,083 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:07,131 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:07,747 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:09,861 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:14:54] 2025-11-26 14:14:11,677 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:14:54] 2025-11-26 14:14:11,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294094604096)>', '<ExcThread(monitor, started 140293588363008)>']
[2025-11-26 09:14:54] 2025-11-26 14:14:16,977 | INFO     | all workflow threads have been joined
[2025-11-26 09:14:54] 2025-11-26 14:14:16,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:14:54] 2025-11-26 14:14:16,978 | INFO     | traces error code: 0
[2025-11-26 09:14:54] 2025-11-26 14:14:16,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:14:54] 2025-11-26 14:14:34,161 | INFO     | PID=1636929 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:14:54] 2025-11-26 14:14:34,161 | INFO     | .. there are 12 such processes running
[2025-11-26 09:14:54] 2025-11-26 14:14:34,162 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:14:54] 2025-11-26 14:14:34,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:14:54] 2025-11-26 14:14:34,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:14:54] 2025-11-26 14:14:34,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:14:54] 2025-11-26 14:14:34,163 | INFO     | [monitor] control thread has ended
[2025-11-26 09:14:54] 2025-11-26 14:14:34,361 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:14:54] 2025-11-26 14:14:34,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:14:54] 2025-11-26 14:14:34,401 [wrapper] pilotpid: 1636929
[2025-11-26 09:14:54] 2025-11-26 14:14:34,419 [wrapper] Pilot exit status: 0
[2025-11-26 09:14:54] 2025-11-26 14:14:34,511 [wrapper] pandaids: 6895372794
[2025-11-26 09:14:54] 2025-11-26 14:14:34,572 [wrapper] cleanup supervisor_pilot  343508 1636930
[2025-11-26 09:14:54] 2025-11-26 14:14:34,575 [wrapper] Test setup, not cleaning
[2025-11-26 09:14:54] 2025-11-26 14:14:34,578 [wrapper] apfmon messages muted
[2025-11-26 09:14:54] 2025-11-26 14:14:34,580 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:14:54] 2025-11-26 14:14:34,582 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:14:54]  *** Error codes and diagnostics ***
[2025-11-26 09:14:54]     "exeErrorCode": 0,
[2025-11-26 09:14:54]     "exeErrorDiag": "",
[2025-11-26 09:14:54]     "pilotErrorCode": 0,
[2025-11-26 09:14:54]     "pilotErrorDiag": "",
[2025-11-26 09:14:54]  *** Listing of results directory ***
[2025-11-26 09:14:55] total 1350676
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 17:10 pilot3.tar.gz
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 17:18 queuedata.json
[2025-11-26 09:14:55] -rwx------. 1 boincer umatlas     36292 Nov 23 17:19 runpilot2-wrapper.sh
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:14:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-26 09:14:55] -rw-r--r--. 2 boincer umatlas 411516567 Nov 25 00:00 EVNT.47483658._000914.pool.root.1
[2025-11-26 09:14:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 09:14:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-26 09:14:55] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:00 input.tar.gz
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:00 pandaJob.out
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas        57 Nov 25 00:00 setup.sh.local
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-26 09:14:55] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:31 boinc_task_state.xml
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 09:11 init_data.xml
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas 931736050 Nov 26 09:12 HITS.47556137._009009.pool.root.1
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas      1072 Nov 26 09:13 memory_monitor_summary.json
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas   3250492 Nov 26 09:13 log.47556137._009009.job.log.tgz.1
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas      8673 Nov 26 09:14 heartbeat.json
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas        95 Nov 26 09:14 pilot_heartbeat.json
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas       823 Nov 26 09:14 pilotlog.txt
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas  14712517 Nov 26 09:14 log.47556137._009009.job.log.1
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas       353 Nov 26 09:14 output.list
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:14 runtime_log
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas  17981440 Nov 26 09:14 result.tar.gz
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas       670 Nov 26 09:14 slhMDmwbXh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1DLKDm0xaKon.diag
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas      9356 Nov 26 09:14 runtime_log.err
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:14 boinc_mmap_file
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:14 wrapper_checkpoint.txt
[2025-11-26 09:14:55] -rw-r--r--. 1 boincer umatlas     21910 Nov 26 09:14 stderr.txt
[2025-11-26 09:14:55] HITS file was successfully produced:
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas 931736050 Nov 26 09:12 shared/HITS.pool.root.1
[2025-11-26 09:14:55]  *** Contents of shared directory: ***
[2025-11-26 09:14:55] total 1329936
[2025-11-26 09:14:55] -rw-r--r--. 2 boincer umatlas 411516567 Nov 25 00:00 ATLAS.root_0
[2025-11-26 09:14:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 09:14:55] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:00 input.tar.gz
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas 931736050 Nov 26 09:12 HITS.pool.root.1
[2025-11-26 09:14:55] -rw-------. 1 boincer umatlas  17981440 Nov 26 09:14 result.tar.gz
09:14:56 (1631806): run_atlas exited; CPU time 263714.086091
09:14:56 (1631806): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN