Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:10:59 (594371): wrapper (7.7.26015): starting
21:10:59 (594371): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:10:59] Arguments: --nthreads 8
[2025-11-24 21:10:59] Threads: 8
[2025-11-24 21:10:59] Checking for CVMFS
[2025-11-24 21:11:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:11:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:11:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:11:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:11:01] 2.13.2.0 11666 32347 286884 153265 1 373 38335024 40960000 20199 16776704 0 53684046 99.794 25371997 35607 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 21:11:01] CVMFS is ok
[2025-11-24 21:11:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:11:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 21:11:01] Further information can be found at the LHC@home message board.
[2025-11-24 21:11:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:11:01] Checking for apptainer binary...
[2025-11-24 21:11:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:11:01] Running /usr/bin/apptainer --version
[2025-11-24 21:11:01] apptainer version 1.4.4-1.el9
[2025-11-24 21:11:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:11:02] c-211-33-2.aglt2.org
[2025-11-24 21:11:02] apptainer works
[2025-11-24 21:11:02] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:11:02] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:11:02] Starting ATLAS job with PandaID=6895372559
[2025-11-24 21:11:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 01:10:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 01:10:06] 2025-11-26 06:09:10,561 | INFO     | monitor loop #5934: job 0:6895372559 is in state 'finished'
[2025-11-26 01:10:06] 2025-11-26 06:09:10,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:10:06] 2025-11-26 06:09:11,593 | INFO     | time since job start (100642s) is within the limit (172800.0s)
[2025-11-26 01:10:06] 2025-11-26 06:09:13,078 | INFO     | monitor loop #5935: job 0:6895372559 is in state 'finished'
[2025-11-26 01:10:06] 2025-11-26 06:09:13,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:10:06] 2025-11-26 06:09:13,618 | INFO     | time since job start (100644s) is within the limit (172800.0s)
[2025-11-26 01:10:06] 2025-11-26 06:09:15,603 | INFO     | monitor loop #5936: job 0:6895372559 is in state 'finished'
[2025-11-26 01:10:06] 2025-11-26 06:09:15,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:10:06] 2025-11-26 06:09:15,636 | INFO     | time since job start (100646s) is within the limit (172800.0s)
[2025-11-26 01:10:06] 2025-11-26 06:09:17,663 | INFO     | time since job start (100648s) is within the limit (172800.0s)
[2025-11-26 01:10:06] 2025-11-26 06:09:18,127 | INFO     | monitor loop #5937: job 0:6895372559 is in state 'finished'
[2025-11-26 01:10:06] 2025-11-26 06:09:18,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 01:10:06] 2025-11-26 06:09:18,378 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 01:10:06] 2025-11-26 06:09:18,445 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2676.483604166667
[2025-11-26 01:10:06] 2025-11-26 06:09:18,477 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895372559/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 01:10:06] 2025-11-26 06:09:18,478 | INFO     | extracted standard info from prmon json
[2025-11-26 01:10:06] 2025-11-26 06:09:18,482 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 01:10:06] 2025-11-26 06:09:18,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 01:10:06] 2025-11-26 06:09:18,537 | INFO     | fitting pss+swap vs Time
[2025-11-26 01:10:06] 2025-11-26 06:09:18,543 | INFO     | sum of square deviations: 1387730017920.45
[2025-11-26 01:10:06] 2025-11-26 06:09:18,738 | INFO     | sum of deviations: 2382457701160.8306
[2025-11-26 01:10:06] 2025-11-26 06:09:18,738 | INFO     | mean x: 1764087055.6195388
[2025-11-26 01:10:06] 2025-11-26 06:09:18,738 | INFO     | mean y: 2882050.675970874
[2025-11-26 01:10:06] 2025-11-26 06:09:18,738 | INFO     | intersect: -3025706173.9103975
[2025-11-26 01:10:06] 2025-11-26 06:09:18,752 | INFO     | chi2: 35.62572887990896
[2025-11-26 01:10:06] 2025-11-26 06:09:18,755 | INFO     | sum of square deviations: 1375138531684.0034
[2025-11-26 01:10:06] 2025-11-26 06:09:18,980 | INFO     | sum of deviations: 2993477926199.268
[2025-11-26 01:10:06] 2025-11-26 06:09:18,980 | INFO     | mean x: 1764086903.1351187
[2025-11-26 01:10:06] 2025-11-26 06:09:18,980 | INFO     | mean y: 2889448.88618381
[2025-11-26 01:10:06] 2025-11-26 06:09:18,980 | INFO     | intersect: -3837272893.1328115
[2025-11-26 01:10:06] 2025-11-26 06:09:18,994 | INFO     | chi2: 31.47363645420182
[2025-11-26 01:10:06] 2025-11-26 06:09:18,994 | INFO     | current chi2=31.47363645420182 (change=11.654757828824954 %)
[2025-11-26 01:10:06] 2025-11-26 06:09:18,995 | INFO     | right removable region: 1642
[2025-11-26 01:10:06] 2025-11-26 06:09:18,997 | INFO     | sum of square deviations: 1375133385114.0032
[2025-11-26 01:10:06] 2025-11-26 06:09:19,217 | INFO     | sum of deviations: 1780467420699.6785
[2025-11-26 01:10:06] 2025-11-26 06:09:19,217 | INFO     | mean x: 1764087208.1351187
[2025-11-26 01:10:06] 2025-11-26 06:09:19,217 | INFO     | mean y: 2889337.83931832
[2025-11-26 01:10:06] 2025-11-26 06:09:19,218 | INFO     | intersect: -2281179855.2718945
[2025-11-26 01:10:06] 2025-11-26 06:09:19,219 | INFO     | chi2: 32.33242114485845
[2025-11-26 01:10:06] 2025-11-26 06:09:19,220 | INFO     | current chi2=32.33242114485845 (change=9.244183455591736 %)
[2025-11-26 01:10:06] 2025-11-26 06:09:19,220 | INFO     | left removable region: 10
[2025-11-26 01:10:06] 2025-11-26 06:09:19,234 | INFO     | sum of square deviations: 1347695739649.3235
[2025-11-26 01:10:06] 2025-11-26 06:09:19,732 | INFO     | time since job start (100650s) is within the limit (172800.0s)
[2025-11-26 01:10:06] 2025-11-26 06:09:20,021 | INFO     | sum of deviations: 2031400381116.6902
[2025-11-26 01:10:06] 2025-11-26 06:09:20,021 | INFO     | mean x: 1764087177.6691177
[2025-11-26 01:10:06] 2025-11-26 06:09:20,021 | INFO     | mean y: 2903748.7420343137
[2025-11-26 01:10:06] 2025-11-26 06:09:20,021 | INFO     | intersect: -2656129191.4174204
[2025-11-26 01:10:06] 2025-11-26 06:09:20,023 | INFO     | chi2: 25.63691732991319
[2025-11-26 01:10:06] 2025-11-26 06:09:20,024 | INFO     | current memory leak: 1.51 B/s (using 1632 data points, chi2=25.64)
[2025-11-26 01:10:06] 2025-11-26 06:09:20,123 | INFO     | could have reported an average CPU frequency of 2631 MHz (58 samples)
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | ..............................
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . Timing measurements:
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . get job = 0 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . initial setup = 4 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . payload setup = 35 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . stage-in = 0 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . payload execution = 100512 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . stage-out = 12 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | . log creation = 5 s
[2025-11-26 01:10:06] 2025-11-26 06:09:20,124 | INFO     | ..............................
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | 
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | job summary report
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | --------------------------------------------------
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | PanDA job id: 6895372559
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | task id: 47556137
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | errors: (none)
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | pilot state: finished 
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | transexitcode: 0
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | exeerrorcode: 0
[2025-11-26 01:10:06] 2025-11-26 06:09:22,410 | INFO     | exeerrordiag: 
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | exitcode: 0
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | exitmsg: OK
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | cpuconsumptiontime: 284402 s
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | nevents: 1000
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | neventsw: 0
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | pid: 614068
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | pgrp: 614068
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | corecount: 8
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | event service: False
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | sizes: {0: 2284088, 1: 2284287, 12: 2284287, 21: 2284577, 23: 2284605, 100550: 2355072, 100563: 2364071, 100567: 2364127, 100607: 2364373}
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | --------------------------------------------------
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | 
[2025-11-26 01:10:06] 2025-11-26 06:09:22,411 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 01:10:06] 2025-11-26 06:09:22,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | job 6895372559 has completed (purged errors)
[2025-11-26 01:10:06] 2025-11-26 06:09:22,645 | INFO     | overall cleanup function is called
[2025-11-26 01:10:06] 2025-11-26 06:09:23,808 | INFO     | --- collectZombieJob: --- 10, [614068]
[2025-11-26 01:10:06] 2025-11-26 06:09:23,808 | INFO     | zombie collector waiting for pid 614068
[2025-11-26 01:10:06] 2025-11-26 06:09:23,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 01:10:06] 2025-11-26 06:09:23,808 | INFO     | collected zombie processes
[2025-11-26 01:10:06] 2025-11-26 06:09:23,808 | INFO     | will attempt to kill all subprocesses of pid=614068
[2025-11-26 01:10:06] 2025-11-26 06:09:26,229 | INFO     | PID=605427 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 01:10:06] 2025-11-26 06:09:26,230 | INFO     | .. there are 19 such processes running
[2025-11-26 01:10:06] 2025-11-26 06:09:27,150 | INFO     | process IDs to be killed: [614068] (in reverse order)
[2025-11-26 01:10:06] 2025-11-26 06:09:27,523 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 01:10:06] 2025-11-26 06:09:27,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 01:10:06] 2025-11-26 06:09:27,565 | INFO     | did not find any defunct processes belonging to 614068
[2025-11-26 01:10:06] 2025-11-26 06:09:27,638 | INFO     | did not find any defunct processes belonging to 614068
[2025-11-26 01:10:06] 2025-11-26 06:09:27,669 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 01:10:06] 2025-11-26 06:09:27,670 | INFO     | ready for new job
[2025-11-26 01:10:06] 2025-11-26 06:09:27,670 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 01:10:06] 2025-11-26 06:09:27,692 | INFO     | ***************************************
[2025-11-26 01:10:06] 2025-11-26 06:09:27,692 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 01:10:06] 2025-11-26 06:09:27,692 | INFO     | ***************************************
[2025-11-26 01:10:06] 2025-11-26 06:09:27,692 | INFO     | 
[2025-11-26 01:10:06] 2025-11-26 06:09:27,739 | INFO     | architecture information:
[2025-11-26 01:10:06] 2025-11-26 06:09:27,748 | INFO     | executing command: cat /etc/os-release
[2025-11-26 01:10:06] 2025-11-26 06:09:27,798 | INFO     | cat /etc/os-release:
[2025-11-26 01:10:06] NAME="CentOS Linux"
[2025-11-26 01:10:06] VERSION="7 (Core)"
[2025-11-26 01:10:06] ID="centos"
[2025-11-26 01:10:06] ID_LIKE="rhel fedora"
[2025-11-26 01:10:06] VERSION_ID="7"
[2025-11-26 01:10:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 01:10:06] ANSI_COLOR="0;31"
[2025-11-26 01:10:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 01:10:06] HOME_URL="https://www.centos.org/"
[2025-11-26 01:10:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 01:10:06] 
[2025-11-26 01:10:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 01:10:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 01:10:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 01:10:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 01:10:06] 
[2025-11-26 01:10:06] 2025-11-26 06:09:27,799 | INFO     | ***************************************
[2025-11-26 01:10:06] 2025-11-26 06:09:28,302 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 01:10:06] 2025-11-26 06:09:28,372 | INFO     | sufficient remaining disk space (122324779008 B)
[2025-11-26 01:10:06] 2025-11-26 06:09:28,373 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 01:10:06] 2025-11-26 06:09:28,373 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 01:10:06] 2025-11-26 06:09:28,373 | INFO     | update_server=False
[2025-11-26 01:10:06] 2025-11-26 06:09:28,373 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 01:10:06] 2025-11-26 06:09:28,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:10:06] 2025-11-26 06:09:28,606 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 01:10:06] 2025-11-26 06:09:28,606 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 01:10:06] 2025-11-26 06:09:28,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 01:10:06] 2025-11-26 06:09:28,607 | INFO     | will abort loop
[2025-11-26 01:10:06] 2025-11-26 06:09:28,730 | INFO     | all job control threads have been joined
[2025-11-26 01:10:06] 2025-11-26 06:09:28,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 01:10:06] 2025-11-26 06:09:29,131 | INFO     | all payload control threads have been joined
[2025-11-26 01:10:06] 2025-11-26 06:09:29,343 | INFO     | all data control threads have been joined
[2025-11-26 01:10:06] 2025-11-26 06:09:29,379 | INFO     | [job] retrieve thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:29,380 | INFO     | [job] queue monitor thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:29,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:29,612 | INFO     | [job] job monitor thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:29,736 | INFO     | [job] control thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:29,793 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 01:10:06] 2025-11-26 06:09:30,137 | INFO     | [payload] control thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,197 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,198 | INFO     | [data] copytool_in thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,350 | INFO     | [data] control thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,356 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,517 | INFO     | [job] validate thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,517 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,723 | INFO     | [payload] validate_post thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:30,723 | INFO     | [payload] failed_post thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:31,800 | INFO     | [data] copytool_out thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:32,879 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 01:10:06] 2025-11-26 06:09:49,377 | INFO     | [monitor] cgroup control has ended
[2025-11-26 01:10:06] 2025-11-26 06:09:49,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672184940352)>', '<ExcThread(monitor, started 139671816345344)>']
[2025-11-26 01:10:06] 2025-11-26 06:09:54,786 | INFO     | all workflow threads have been joined
[2025-11-26 01:10:06] 2025-11-26 06:09:54,786 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 01:10:06] 2025-11-26 06:09:54,786 | INFO     | traces error code: 0
[2025-11-26 01:10:06] 2025-11-26 06:09:54,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 01:10:06] 2025-11-26 06:10:04,371 | INFO     | PID=605427 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 01:10:06] 2025-11-26 06:10:04,371 | INFO     | .. there are 19 such processes running
[2025-11-26 01:10:06] 2025-11-26 06:10:04,372 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 01:10:06] 2025-11-26 06:10:04,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 01:10:06] 2025-11-26 06:10:04,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 01:10:06] 2025-11-26 06:10:04,372 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 01:10:06] 2025-11-26 06:10:04,494 | INFO     | [monitor] control thread has ended
[2025-11-26 01:10:06] 2025-11-26 06:10:05,489 [wrapper] ==== pilot stdout END ====
[2025-11-26 01:10:06] 2025-11-26 06:10:05,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 01:10:06] 2025-11-26 06:10:05,543 [wrapper] pilotpid: 605427
[2025-11-26 01:10:06] 2025-11-26 06:10:05,583 [wrapper] Pilot exit status: 0
[2025-11-26 01:10:06] 2025-11-26 06:10:05,693 [wrapper] pandaids: 6895372559
[2025-11-26 01:10:06] 2025-11-26 06:10:05,945 [wrapper] cleanup supervisor_pilot 3781383 605428
[2025-11-26 01:10:06] 2025-11-26 06:10:05,985 [wrapper] Test setup, not cleaning
[2025-11-26 01:10:06] 2025-11-26 06:10:05,999 [wrapper] apfmon messages muted
[2025-11-26 01:10:06] 2025-11-26 06:10:06,030 [wrapper] ==== wrapper stdout END ====
[2025-11-26 01:10:06] 2025-11-26 06:10:06,064 [wrapper] ==== wrapper stderr END ====
[2025-11-26 01:10:06]  *** Error codes and diagnostics ***
[2025-11-26 01:10:06]     "exeErrorCode": 0,
[2025-11-26 01:10:06]     "exeErrorDiag": "",
[2025-11-26 01:10:06]     "pilotErrorCode": 0,
[2025-11-26 01:10:06]     "pilotErrorDiag": "",
[2025-11-26 01:10:06]  *** Listing of results directory ***
[2025-11-26 01:10:06] total 1339404
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 16:55 queuedata.json
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 16:55 pilot3.tar.gz
[2025-11-26 01:10:06] -rwx------. 1 boincer umatlas     36292 Nov 23 16:55 runpilot2-wrapper.sh
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas       100 Nov 24 21:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 01:10:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 21:10 run_atlas
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas       105 Nov 24 21:10 job.xml
[2025-11-26 01:10:06] -rw-r--r--. 2 boincer umatlas 410649951 Nov 24 21:10 EVNT.47483658._000908.pool.root.1
[2025-11-26 01:10:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 21:10 start_atlas.sh
[2025-11-26 01:10:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 21:10 shared
[2025-11-26 01:10:06] -rw-r--r--. 2 boincer umatlas    590095 Nov 24 21:10 input.tar.gz
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas         0 Nov 24 21:10 boinc_lockfile
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 21:11 pandaJob.out
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas        57 Nov 24 21:11 setup.sh.local
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas    991801 Nov 24 21:11 agis_schedconf.cvmfs.json
[2025-11-26 01:10:06] drwx------. 5 boincer umatlas      4096 Nov 24 21:11 pilot3
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas       533 Nov 26 00:10 boinc_task_state.xml
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 01:04 init_data.xml
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas 926765208 Nov 26 01:05 HITS.47556137._008947.pool.root.1
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas      1062 Nov 26 01:08 memory_monitor_summary.json
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas   1516240 Nov 26 01:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas   2607434 Nov 26 01:08 log.47556137._008947.job.log.tgz.1
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas        95 Nov 26 01:09 pilot_heartbeat.json
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas      8638 Nov 26 01:09 heartbeat.json
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas       822 Nov 26 01:10 pilotlog.txt
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 01:10 boinc_mmap_file
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas  12500985 Nov 26 01:10 log.47556137._008947.job.log.1
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas        29 Nov 26 01:10 wrapper_checkpoint.txt
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas       353 Nov 26 01:10 output.list
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas       620 Nov 26 01:10 runtime_log
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas  15124480 Nov 26 01:10 result.tar.gz
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 01:10 runtime_log.err
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas       664 Nov 26 01:10 KcNLDmxEXh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQmIKDmYiGTcm.diag
[2025-11-26 01:10:06] -rw-r--r--. 1 boincer umatlas     21840 Nov 26 01:10 stderr.txt
[2025-11-26 01:10:06] HITS file was successfully produced:
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas 926765208 Nov 26 01:05 shared/HITS.pool.root.1
[2025-11-26 01:10:06]  *** Contents of shared directory: ***
[2025-11-26 01:10:06] total 1321452
[2025-11-26 01:10:06] -rw-r--r--. 2 boincer umatlas 410649951 Nov 24 21:10 ATLAS.root_0
[2025-11-26 01:10:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 21:10 start_atlas.sh
[2025-11-26 01:10:06] -rw-r--r--. 2 boincer umatlas    590095 Nov 24 21:10 input.tar.gz
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas 926765208 Nov 26 01:05 HITS.pool.root.1
[2025-11-26 01:10:06] -rw-------. 1 boincer umatlas  15124480 Nov 26 01:10 result.tar.gz
01:10:08 (594371): run_atlas exited; CPU time 286842.218960
01:10:08 (594371): called boinc_finish(0)

</stderr_txt>
]]>

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