Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
19:03:56 (515927): wrapper (7.7.26015): starting
19:03:56 (515927): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 19:03:56] Arguments: --nthreads 4
[2025-11-26 19:03:56] Threads: 4
[2025-11-26 19:03:56] Checking for CVMFS
[2025-11-26 19:03:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:03:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:03:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:03:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:03:56] 2.12.7.0 1898503 12173 58068 153330 0 81 3021704 4096000 846 130560 56 7410143 99.915 732599 427 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.210:3128 1
[2025-11-26 19:03:56] CVMFS is ok
[2025-11-26 19:03:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:03:56] Checking for apptainer binary...
[2025-11-26 19:03:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:03:56] Running /usr/bin/apptainer --version
[2025-11-26 19:03:56] apptainer version 1.4.2
[2025-11-26 19:03:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:03:57] TC-910
[2025-11-26 19:03:57] apptainer works
[2025-11-26 19:03:57] Set ATHENA_PROC_NUMBER=4
[2025-11-26 19:03:57] Set ATHENA_CORE_NUMBER=4
[2025-11-26 19:03:57] Starting ATLAS job with PandaID=6895373009
[2025-11-26 19:03:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:53:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:53:26] 2025-11-27 06:52:36,149 | INFO     | .. there are 2 such processes running
[2025-11-27 07:53:26] 2025-11-27 06:52:36,204 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 07:53:26] 2025-11-27 06:52:36,206 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 4000.0093750000005
[2025-11-27 07:53:26] 2025-11-27 06:52:36,207 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6895373009/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,207 | INFO     | extracted standard info from prmon json
[2025-11-27 07:53:26] 2025-11-27 06:52:36,207 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:53:26] 2025-11-27 06:52:36,207 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:53:26] 2025-11-27 06:52:36,211 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:53:26] 2025-11-27 06:52:36,212 | INFO     | sum of square deviations: 133980990910.9951
[2025-11-27 07:53:26] 2025-11-27 06:52:36,217 | INFO     | sum of deviations: 674540563812.6672
[2025-11-27 07:53:26] 2025-11-27 06:52:36,217 | INFO     | mean x: 1764203291.5026455
[2025-11-27 07:53:26] 2025-11-27 06:52:36,217 | INFO     | mean y: 2361963.4166666665
[2025-11-27 07:53:26] 2025-11-27 06:52:36,217 | INFO     | intersect: -8879694176.330086
[2025-11-27 07:53:26] 2025-11-27 06:52:36,218 | INFO     | chi2: 2.910227294812008
[2025-11-27 07:53:26] 2025-11-27 06:52:36,218 | INFO     | sum of square deviations: 131340179215.99472
[2025-11-27 07:53:26] 2025-11-27 06:52:36,223 | INFO     | sum of deviations: 779759710118.2108
[2025-11-27 07:53:26] 2025-11-27 06:52:36,223 | INFO     | mean x: 1764203139.0026631
[2025-11-27 07:53:26] 2025-11-27 06:52:36,223 | INFO     | mean y: 2368023.8948069243
[2025-11-27 07:53:26] 2025-11-27 06:52:36,223 | INFO     | intersect: -10471612874.182312
[2025-11-27 07:53:26] 2025-11-27 06:52:36,224 | INFO     | chi2: 1.5920285520289457
[2025-11-27 07:53:26] 2025-11-27 06:52:36,224 | INFO     | current chi2=1.5920285520289457 (change=45.295387928392515 %)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,224 | INFO     | sum of square deviations: 128734298408.49461
[2025-11-27 07:53:26] 2025-11-27 06:52:36,229 | INFO     | sum of deviations: 769771277572.3403
[2025-11-27 07:53:26] 2025-11-27 06:52:36,229 | INFO     | mean x: 1764202986.502681
[2025-11-27 07:53:26] 2025-11-27 06:52:36,229 | INFO     | mean y: 2367439.329758713
[2025-11-27 07:53:26] 2025-11-27 06:52:36,229 | INFO     | intersect: -10546746538.888002
[2025-11-27 07:53:26] 2025-11-27 06:52:36,230 | INFO     | chi2: 1.5905630729572693
[2025-11-27 07:53:26] 2025-11-27 06:52:36,230 | INFO     | current chi2=1.5905630729572693 (change=0.09205105460003923 %)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,230 | INFO     | right removable region: 745
[2025-11-27 07:53:26] 2025-11-27 06:52:36,230 | INFO     | sum of square deviations: 131340177995.99472
[2025-11-27 07:53:26] 2025-11-27 06:52:36,235 | INFO     | sum of deviations: 561059238411.7009
[2025-11-27 07:53:26] 2025-11-27 06:52:36,235 | INFO     | mean x: 1764203444.0026631
[2025-11-27 07:53:26] 2025-11-27 06:52:36,235 | INFO     | mean y: 2368497.649800266
[2025-11-27 07:53:26] 2025-11-27 06:52:36,235 | INFO     | intersect: -7533959348.088457
[2025-11-27 07:53:26] 2025-11-27 06:52:36,236 | INFO     | chi2: 1.5236260038135447
[2025-11-27 07:53:26] 2025-11-27 06:52:36,236 | INFO     | current chi2=1.5236260038135447 (change=47.64580737285792 %)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,236 | INFO     | sum of square deviations: 128734295968.49461
[2025-11-27 07:53:26] 2025-11-27 06:52:36,241 | INFO     | sum of deviations: 548254812131.21216
[2025-11-27 07:53:26] 2025-11-27 06:52:36,241 | INFO     | mean x: 1764203596.502681
[2025-11-27 07:53:26] 2025-11-27 06:52:36,241 | INFO     | mean y: 2369246.3941018768
[2025-11-27 07:53:26] 2025-11-27 06:52:36,241 | INFO     | intersect: -7511037372.13822
[2025-11-27 07:53:26] 2025-11-27 06:52:36,242 | INFO     | chi2: 1.5231135246469882
[2025-11-27 07:53:26] 2025-11-27 06:52:36,242 | INFO     | current chi2=1.5231135246469882 (change=0.033635496196166 %)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,242 | INFO     | left removable region: 20
[2025-11-27 07:53:26] 2025-11-27 06:52:36,242 | INFO     | sum of square deviations: 118165790957.99431
[2025-11-27 07:53:26] 2025-11-27 06:52:36,247 | INFO     | sum of deviations: 592336570833.7206
[2025-11-27 07:53:26] 2025-11-27 06:52:36,247 | INFO     | mean x: 1764203566.0027585
[2025-11-27 07:53:26] 2025-11-27 06:52:36,247 | INFO     | mean y: 2377847.139310345
[2025-11-27 07:53:26] 2025-11-27 06:52:36,247 | INFO     | intersect: -8841148541.22273
[2025-11-27 07:53:26] 2025-11-27 06:52:36,247 | INFO     | chi2: 0.16829511751684575
[2025-11-27 07:53:26] 2025-11-27 06:52:36,247 | INFO     | current memory leak: 5.01 B/s (using 725 data points, chi2=0.17)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | could have reported an average CPU frequency of 3999 MHz (29 samples)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | ..............................
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . Timing measurements:
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . get job = 0 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . initial setup = 1 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . payload setup = 3 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . stage-in = 0 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . payload execution = 46086 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . stage-out = 1 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | . log creation = 0 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,248 | INFO     | ..............................
[2025-11-27 07:53:26] 2025-11-27 06:52:36,412 | INFO     | 
[2025-11-27 07:53:26] 2025-11-27 06:52:36,412 | INFO     | job summary report
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | --------------------------------------------------
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | PanDA job id: 6895373009
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | task id: 47556137
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | errors: (none)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | pilot state: finished 
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | transexitcode: 0
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | exeerrorcode: 0
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | exeerrordiag: 
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | exitcode: 0
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | exitmsg: OK
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | cpuconsumptiontime: 181445 s
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | nevents: 1000
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | neventsw: 0
[2025-11-27 07:53:26] 2025-11-27 06:52:36,413 | INFO     | pid: 526058
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | pgrp: 526058
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | corecount: 4
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | event service: False
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | sizes: {0: 2284315, 2: 2284577, 11: 2284605, 46093: 2331200, 46094: 2331199, 46095: 2340435, 46099: 2340625}
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | --------------------------------------------------
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | 
[2025-11-27 07:53:26] 2025-11-27 06:52:36,414 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2025-11-27 07:53:26] 2025-11-27 06:52:36,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:53:26] 2025-11-27 06:52:36,427 | INFO     | job 6895373009 has completed (purged errors)
[2025-11-27 07:53:26] 2025-11-27 06:52:36,427 | INFO     | overall cleanup function is called
[2025-11-27 07:53:26] 2025-11-27 06:52:37,436 | INFO     | --- collectZombieJob: --- 10, [526058]
[2025-11-27 07:53:26] 2025-11-27 06:52:37,436 | INFO     | zombie collector waiting for pid 526058
[2025-11-27 07:53:26] 2025-11-27 06:52:37,437 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:53:26] 2025-11-27 06:52:37,437 | INFO     | collected zombie processes
[2025-11-27 07:53:26] 2025-11-27 06:52:37,437 | INFO     | will attempt to kill all subprocesses of pid=526058
[2025-11-27 07:53:26] 2025-11-27 06:52:37,507 | INFO     | process IDs to be killed: [526058] (in reverse order)
[2025-11-27 07:53:26] 2025-11-27 06:52:37,533 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:53:26] 2025-11-27 06:52:37,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:53:26] 2025-11-27 06:52:37,535 | INFO     | did not find any defunct processes belonging to 526058
[2025-11-27 07:53:26] 2025-11-27 06:52:37,537 | INFO     | did not find any defunct processes belonging to 526058
[2025-11-27 07:53:26] 2025-11-27 06:52:37,538 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:53:26] 2025-11-27 06:52:37,538 | INFO     | ready for new job
[2025-11-27 07:53:26] 2025-11-27 06:52:37,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:53:26] 2025-11-27 06:52:37,540 | INFO     | ***************************************
[2025-11-27 07:53:26] 2025-11-27 06:52:37,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:53:26] 2025-11-27 06:52:37,540 | INFO     | ***************************************
[2025-11-27 07:53:26] 2025-11-27 06:52:37,540 | INFO     | 
[2025-11-27 07:53:26] 2025-11-27 06:52:37,541 | INFO     | architecture information:
[2025-11-27 07:53:26] 2025-11-27 06:52:37,541 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:53:26] 2025-11-27 06:52:37,549 | INFO     | cat /etc/os-release:
[2025-11-27 07:53:26] NAME="CentOS Linux"
[2025-11-27 07:53:26] VERSION="7 (Core)"
[2025-11-27 07:53:26] ID="centos"
[2025-11-27 07:53:26] ID_LIKE="rhel fedora"
[2025-11-27 07:53:26] VERSION_ID="7"
[2025-11-27 07:53:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:53:26] ANSI_COLOR="0;31"
[2025-11-27 07:53:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:53:26] HOME_URL="https://www.centos.org/"
[2025-11-27 07:53:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:53:26] 
[2025-11-27 07:53:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:53:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:53:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:53:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:53:26] 
[2025-11-27 07:53:26] 2025-11-27 06:52:37,549 | INFO     | ***************************************
[2025-11-27 07:53:26] 2025-11-27 06:52:38,050 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2025-11-27 07:53:26] 2025-11-27 06:52:38,059 | INFO     | sufficient remaining disk space (122226212864 B)
[2025-11-27 07:53:26] 2025-11-27 06:52:38,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:53:26] 2025-11-27 06:52:38,060 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:53:26] 2025-11-27 06:52:38,060 | INFO     | update_server=False
[2025-11-27 07:53:26] 2025-11-27 06:52:38,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:53:26] 2025-11-27 06:52:38,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:53:26] 2025-11-27 06:52:38,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:53:26] 2025-11-27 06:52:38,083 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 07:53:26] 2025-11-27 06:52:38,083 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 07:53:26] 2025-11-27 06:52:38,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:53:26] 2025-11-27 06:52:38,083 | INFO     | will abort loop
[2025-11-27 07:53:26] 2025-11-27 06:52:38,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:53:26] 2025-11-27 06:52:38,556 | INFO     | all payload control threads have been joined
[2025-11-27 07:53:26] 2025-11-27 06:52:38,699 | INFO     | all data control threads have been joined
[2025-11-27 07:53:26] 2025-11-27 06:52:39,060 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,065 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,083 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,086 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,234 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,413 | INFO     | all job control threads have been joined
[2025-11-27 07:53:26] 2025-11-27 06:52:39,562 | INFO     | [payload] control thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,705 | INFO     | [data] control thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,912 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:39,995 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:40,063 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:40,153 | INFO     | [job] validate thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:40,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:40,418 | INFO     | [job] control thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:40,533 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:40,533 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:52:42,433 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:53:26] 2025-11-27 06:53:08,292 | INFO     | PID=519635 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:53:26] 2025-11-27 06:53:08,292 | INFO     | .. there are 2 such processes running
[2025-11-27 07:53:26] 2025-11-27 06:53:08,293 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:53:26] 2025-11-27 06:53:08,293 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:53:26] 2025-11-27 06:53:08,293 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:53:26] 2025-11-27 06:53:20,283 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:53:26] 2025-11-27 06:53:21,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328799962944)>', '<ExcThread(monitor, started 140328300431104)>']
[2025-11-27 07:53:26] 2025-11-27 06:53:21,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:53:26] 2025-11-27 06:53:21,352 | INFO     | [monitor] control thread has ended
[2025-11-27 07:53:26] 2025-11-27 06:53:26,053 | INFO     | all workflow threads have been joined
[2025-11-27 07:53:26] 2025-11-27 06:53:26,053 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:53:26] 2025-11-27 06:53:26,053 | INFO     | traces error code: 0
[2025-11-27 07:53:26] 2025-11-27 06:53:26,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:53:26] 2025-11-27 06:53:26,122 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:53:26] 2025-11-27 06:53:26,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:53:26] 2025-11-27 06:53:26,125 [wrapper] pilotpid: 519635
[2025-11-27 07:53:26] 2025-11-27 06:53:26,127 [wrapper] Pilot exit status: 0
[2025-11-27 07:53:26] 2025-11-27 06:53:26,132 [wrapper] pandaids: 6895373009
[2025-11-27 07:53:26] 2025-11-27 06:53:26,150 [wrapper] cleanup supervisor_pilot  681641 519636
[2025-11-27 07:53:26] 2025-11-27 06:53:26,151 [wrapper] Test setup, not cleaning
[2025-11-27 07:53:26] 2025-11-27 06:53:26,153 [wrapper] apfmon messages muted
[2025-11-27 07:53:26] 2025-11-27 06:53:26,154 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:53:26] 2025-11-27 06:53:26,156 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:53:26]  *** Error codes and diagnostics ***
[2025-11-27 07:53:26]     "exeErrorCode": 0,
[2025-11-27 07:53:26]     "exeErrorDiag": "",
[2025-11-27 07:53:26]     "pilotErrorCode": 0,
[2025-11-27 07:53:26]     "pilotErrorDiag": "",
[2025-11-27 07:53:26]  *** Listing of results directory ***
[2025-11-27 07:53:26] insgesamt 1324160
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc      5112 23. Nov 23:26 queuedata.json
[2025-11-27 07:53:26] -rwx------ 1 boinc boinc     36292 23. Nov 23:28 runpilot2-wrapper.sh
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc    576529 23. Nov 23:28 pilot3.tar.gz
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc       100 26. Nov 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:53:26] -rwxr-xr-x 1 boinc boinc      7986 26. Nov 19:03 run_atlas
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc       105 26. Nov 19:03 job.xml
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc      9854 26. Nov 19:03 init_data.xml
[2025-11-27 07:53:26] -rw-r--r-- 2 boinc boinc 412145811 26. Nov 19:03 EVNT.47483658._000920.pool.root.1
[2025-11-27 07:53:26] drwxrwx--x 2 boinc boinc      4096 26. Nov 19:03 shared
[2025-11-27 07:53:26] -rw-r--r-- 2 boinc boinc    590098 26. Nov 19:03 input.tar.gz
[2025-11-27 07:53:26] -rw-r--r-- 2 boinc boinc     15847 26. Nov 19:03 start_atlas.sh
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc         0 26. Nov 19:03 boinc_lockfile
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc      2785 26. Nov 19:03 pandaJob.out
[2025-11-27 07:53:26] -rw------- 1 boinc boinc        52 26. Nov 19:03 setup.sh.local
[2025-11-27 07:53:26] -rw------- 1 boinc boinc    991530 26. Nov 19:04 agis_schedconf.cvmfs.json
[2025-11-27 07:53:26] drwx------ 5 boinc boinc      4096 26. Nov 19:04 pilot3
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc       532 27. Nov 07:48 boinc_task_state.xml
[2025-11-27 07:53:26] -rw------- 1 boinc boinc 923701584 27. Nov 07:52 HITS.47556137._009065.pool.root.1
[2025-11-27 07:53:26] -rw------- 1 boinc boinc      1030 27. Nov 07:52 memory_monitor_summary.json
[2025-11-27 07:53:26] -rw------- 1 boinc boinc   1516240 27. Nov 07:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:53:26] -rw------- 1 boinc boinc   1513240 27. Nov 07:52 log.47556137._009065.job.log.tgz.1
[2025-11-27 07:53:26] -rw------- 1 boinc boinc      8581 27. Nov 07:52 heartbeat.json
[2025-11-27 07:53:26] -rw------- 1 boinc boinc        95 27. Nov 07:53 pilot_heartbeat.json
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc      8192 27. Nov 07:53 boinc_mmap_file
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc        29 27. Nov 07:53 wrapper_checkpoint.txt
[2025-11-27 07:53:26] -rw------- 1 boinc boinc      5010 27. Nov 07:53 pilotlog.txt
[2025-11-27 07:53:26] -rw------- 1 boinc boinc   6567621 27. Nov 07:53 log.47556137._009065.job.log.1
[2025-11-27 07:53:26] -rw------- 1 boinc boinc       353 27. Nov 07:53 output.list
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc       620 27. Nov 07:53 runtime_log
[2025-11-27 07:53:26] -rw------- 1 boinc boinc   8099840 27. Nov 07:53 result.tar.gz
[2025-11-27 07:53:26] -rw------- 1 boinc boinc       652 27. Nov 07:53 yssMDmukXh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmnIKDmQPVGJn.diag
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc      9299 27. Nov 07:53 runtime_log.err
[2025-11-27 07:53:26] -rw-r--r-- 1 boinc boinc     20941 27. Nov 07:53 stderr.txt
[2025-11-27 07:53:26] HITS file was successfully produced:
[2025-11-27 07:53:26] -rw------- 1 boinc boinc 923701584 27. Nov 07:52 shared/HITS.pool.root.1
[2025-11-27 07:53:26]  *** Contents of shared directory: ***
[2025-11-27 07:53:26] insgesamt 1313060
[2025-11-27 07:53:26] -rw-r--r-- 2 boinc boinc 412145811 26. Nov 19:03 ATLAS.root_0
[2025-11-27 07:53:26] -rw-r--r-- 2 boinc boinc    590098 26. Nov 19:03 input.tar.gz
[2025-11-27 07:53:26] -rw-r--r-- 2 boinc boinc     15847 26. Nov 19:03 start_atlas.sh
[2025-11-27 07:53:26] -rw------- 1 boinc boinc 923701584 27. Nov 07:52 HITS.pool.root.1
[2025-11-27 07:53:26] -rw------- 1 boinc boinc   8099840 27. Nov 07:53 result.tar.gz
07:53:27 (515927): run_atlas exited; CPU time 181713.025252
07:53:27 (515927): called boinc_finish(0)

</stderr_txt>
]]>

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