Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:12:43 (3016604): wrapper (7.7.26015): starting
16:12:43 (3016604): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 16:12:43] Arguments: --nthreads 8
[2025-11-24 16:12:43] Threads: 8
[2025-11-24 16:12:43] Checking for CVMFS
[2025-11-24 16:12:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:12:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:12:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:12:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:12:44] 2.13.3.0 10978 27648 342176 153258 0 186 38751745 40960000 15651 16776704 0 62837061 99.515 81591149 38865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 16:12:44] CVMFS is ok
[2025-11-24 16:12:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 16:12:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 16:12:44] Further information can be found at the LHC@home message board.
[2025-11-24 16:12:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:12:44] Checking for apptainer binary...
[2025-11-24 16:12:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:12:44] Running /usr/bin/apptainer --version
[2025-11-24 16:12:44] apptainer version 1.4.4-1.el9
[2025-11-24 16:12:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:12:44] c6-8-12-1.aglt2.org
[2025-11-24 16:12:44] apptainer works
[2025-11-24 16:12:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 16:12:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 16:12:44] Starting ATLAS job with PandaID=6895373219
[2025-11-24 16:12:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:43:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:43:32] 2025-11-25 17:42:30,243 | INFO     | time since job start (73762s) is within the limit (172800.0s)
[2025-11-25 12:43:32] 2025-11-25 17:42:32,256 | INFO     | time since job start (73764s) is within the limit (172800.0s)
[2025-11-25 12:43:32] 2025-11-25 17:42:32,612 | INFO     | monitor loop #4469: job 0:6895373219 is in state 'finished'
[2025-11-25 12:43:32] 2025-11-25 17:42:32,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:43:32] 2025-11-25 17:42:34,273 | INFO     | time since job start (73766s) is within the limit (172800.0s)
[2025-11-25 12:43:32] 2025-11-25 17:42:35,138 | INFO     | monitor loop #4470: job 0:6895373219 is in state 'finished'
[2025-11-25 12:43:32] 2025-11-25 17:42:35,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:43:32] 2025-11-25 17:42:36,280 | INFO     | time since job start (73768s) is within the limit (172800.0s)
[2025-11-25 12:43:32] 2025-11-25 17:42:37,663 | INFO     | monitor loop #4471: job 0:6895373219 is in state 'finished'
[2025-11-25 12:43:32] 2025-11-25 17:42:37,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:43:32] 2025-11-25 17:42:38,292 | INFO     | time since job start (73770s) is within the limit (172800.0s)
[2025-11-25 12:43:32] 2025-11-25 17:42:39,941 | INFO     | PID=3020281 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:43:32] 2025-11-25 17:42:39,941 | INFO     | .. there are 19 such processes running
[2025-11-25 12:43:32] 2025-11-25 17:42:40,173 | INFO     | monitor loop #4472: job 0:6895373219 is in state 'finished'
[2025-11-25 12:43:32] 2025-11-25 17:42:40,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:43:32] 2025-11-25 17:42:40,398 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:43:32] 2025-11-25 17:42:40,410 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2898.5544107142855
[2025-11-25 12:43:32] 2025-11-25 17:42:40,470 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895373219/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:43:32] 2025-11-25 17:42:40,471 | INFO     | extracted standard info from prmon json
[2025-11-25 12:43:32] 2025-11-25 17:42:40,471 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:43:32] 2025-11-25 17:42:40,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:43:32] 2025-11-25 17:42:40,490 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:43:32] 2025-11-25 17:42:40,492 | INFO     | sum of square deviations: 546648231329.8672
[2025-11-25 12:43:32] 2025-11-25 17:42:40,864 | INFO     | sum of deviations: 429353598262.23676
[2025-11-25 12:43:32] 2025-11-25 17:42:40,864 | INFO     | mean x: 1764055648.7193708
[2025-11-25 12:43:32] 2025-11-25 17:42:40,864 | INFO     | mean y: 2940295.5198675497
[2025-11-25 12:43:32] 2025-11-25 17:42:40,914 | INFO     | intersect: -1382600893.3172395
[2025-11-25 12:43:32] 2025-11-25 17:42:40,943 | INFO     | chi2: 23.97194791896406
[2025-11-25 12:43:32] 2025-11-25 17:42:40,945 | INFO     | sum of square deviations: 539890366804.95496
[2025-11-25 12:43:32] 2025-11-25 17:42:41,018 | INFO     | time since job start (73773s) is within the limit (172800.0s)
[2025-11-25 12:43:32] 2025-11-25 17:42:41,515 | INFO     | sum of deviations: 858325902519.0837
[2025-11-25 12:43:32] 2025-11-25 17:42:41,515 | INFO     | mean x: 1764055496.2360766
[2025-11-25 12:43:32] 2025-11-25 17:42:41,516 | INFO     | mean y: 2949971.975062344
[2025-11-25 12:43:32] 2025-11-25 17:42:41,516 | INFO     | intersect: -2801572240.3051
[2025-11-25 12:43:32] 2025-11-25 17:42:41,517 | INFO     | chi2: 20.32127241154136
[2025-11-25 12:43:32] 2025-11-25 17:42:41,517 | INFO     | current chi2=20.32127241154136 (change=15.228948101187347 %)
[2025-11-25 12:43:32] 2025-11-25 17:42:41,517 | INFO     | right removable region: 1202
[2025-11-25 12:43:32] 2025-11-25 17:42:41,518 | INFO     | sum of square deviations: 539887331315.4817
[2025-11-25 12:43:32] 2025-11-25 17:42:41,667 | INFO     | sum of deviations: 12572972634.83722
[2025-11-25 12:43:32] 2025-11-25 17:42:41,667 | INFO     | mean x: 1764055801.2369077
[2025-11-25 12:43:32] 2025-11-25 17:42:41,668 | INFO     | mean y: 2949693.7514546965
[2025-11-25 12:43:32] 2025-11-25 17:42:41,668 | INFO     | intersect: -38131887.58744322
[2025-11-25 12:43:32] 2025-11-25 17:42:41,674 | INFO     | chi2: 21.078184003386475
[2025-11-25 12:43:32] 2025-11-25 17:42:41,674 | INFO     | current chi2=21.078184003386475 (change=12.071459212909206 %)
[2025-11-25 12:43:32] 2025-11-25 17:42:41,674 | INFO     | left removable region: 10
[2025-11-25 12:43:32] 2025-11-25 17:42:41,675 | INFO     | sum of square deviations: 525213860505.3885
[2025-11-25 12:43:32] 2025-11-25 17:42:41,826 | INFO     | sum of deviations: 422465018695.75494
[2025-11-25 12:43:32] 2025-11-25 17:42:41,826 | INFO     | mean x: 1764055770.772651
[2025-11-25 12:43:32] 2025-11-25 17:42:41,826 | INFO     | mean y: 2963339.7961409395
[2025-11-25 12:43:32] 2025-11-25 17:42:41,826 | INFO     | intersect: -1415985987.7457898
[2025-11-25 12:43:32] 2025-11-25 17:42:41,977 | INFO     | chi2: 16.74234286122839
[2025-11-25 12:43:32] 2025-11-25 17:42:41,977 | INFO     | current memory leak: 0.80 B/s (using 1192 data points, chi2=16.74)
[2025-11-25 12:43:32] 2025-11-25 17:42:41,979 | INFO     | could have reported an average CPU frequency of 2801 MHz (44 samples)
[2025-11-25 12:43:32] 2025-11-25 17:42:41,979 | INFO     | ..............................
[2025-11-25 12:43:32] 2025-11-25 17:42:41,979 | INFO     | . Timing measurements:
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . get job = 0 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . initial setup = 4 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . payload setup = 10 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . stage-in = 0 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . payload execution = 73687 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . stage-out = 11 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | . log creation = 2 s
[2025-11-25 12:43:32] 2025-11-25 17:42:41,980 | INFO     | ..............................
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | 
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | job summary report
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | --------------------------------------------------
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | PanDA job id: 6895373219
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | task id: 47556149
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | errors: (none)
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | pilot state: finished 
[2025-11-25 12:43:32] 2025-11-25 17:42:42,406 | INFO     | transexitcode: 0
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | exeerrorcode: 0
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | exeerrordiag: 
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | exitcode: 0
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | exitmsg: OK
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | cpuconsumptiontime: 242897 s
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | nevents: 1000
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | neventsw: 0
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | pid: 3027271
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | pgrp: 3027271
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | corecount: 8
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | event service: False
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | sizes: {0: 2284303, 1: 2284303, 10: 2284593, 12: 2284621, 73703: 2343501, 73704: 2343500, 73716: 2352739, 73753: 2352929}
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | --------------------------------------------------
[2025-11-25 12:43:32] 2025-11-25 17:42:42,407 | INFO     | 
[2025-11-25 12:43:32] 2025-11-25 17:42:42,408 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:43:32] 2025-11-25 17:42:42,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,456 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,456 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | job 6895373219 has completed (purged errors)
[2025-11-25 12:43:32] 2025-11-25 17:42:42,458 | INFO     | overall cleanup function is called
[2025-11-25 12:43:32] 2025-11-25 17:42:43,499 | INFO     | --- collectZombieJob: --- 10, [3027271]
[2025-11-25 12:43:32] 2025-11-25 17:42:43,499 | INFO     | zombie collector waiting for pid 3027271
[2025-11-25 12:43:32] 2025-11-25 17:42:43,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:43:32] 2025-11-25 17:42:43,499 | INFO     | collected zombie processes
[2025-11-25 12:43:32] 2025-11-25 17:42:43,499 | INFO     | will attempt to kill all subprocesses of pid=3027271
[2025-11-25 12:43:32] 2025-11-25 17:42:44,592 | INFO     | process IDs to be killed: [3027271] (in reverse order)
[2025-11-25 12:43:32] 2025-11-25 17:42:44,813 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:43:32] 2025-11-25 17:42:44,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:43:32] 2025-11-25 17:42:44,832 | INFO     | did not find any defunct processes belonging to 3027271
[2025-11-25 12:43:32] 2025-11-25 17:42:44,862 | INFO     | did not find any defunct processes belonging to 3027271
[2025-11-25 12:43:32] 2025-11-25 17:42:44,867 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:43:32] 2025-11-25 17:42:44,867 | INFO     | ready for new job
[2025-11-25 12:43:32] 2025-11-25 17:42:44,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:43:32] 2025-11-25 17:42:44,877 | INFO     | ***************************************
[2025-11-25 12:43:32] 2025-11-25 17:42:44,877 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:43:32] 2025-11-25 17:42:44,877 | INFO     | ***************************************
[2025-11-25 12:43:32] 2025-11-25 17:42:44,877 | INFO     | 
[2025-11-25 12:43:32] 2025-11-25 17:42:44,884 | INFO     | architecture information:
[2025-11-25 12:43:32] 2025-11-25 17:42:44,897 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:43:32] 2025-11-25 17:42:44,957 | INFO     | cat /etc/os-release:
[2025-11-25 12:43:32] NAME="CentOS Linux"
[2025-11-25 12:43:32] VERSION="7 (Core)"
[2025-11-25 12:43:32] ID="centos"
[2025-11-25 12:43:32] ID_LIKE="rhel fedora"
[2025-11-25 12:43:32] VERSION_ID="7"
[2025-11-25 12:43:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:43:32] ANSI_COLOR="0;31"
[2025-11-25 12:43:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:43:32] HOME_URL="https://www.centos.org/"
[2025-11-25 12:43:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:43:32] 
[2025-11-25 12:43:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:43:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:43:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:43:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:43:32] 
[2025-11-25 12:43:32] 2025-11-25 17:42:44,957 | INFO     | ***************************************
[2025-11-25 12:43:32] 2025-11-25 17:42:45,461 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:43:32] 2025-11-25 17:42:45,510 | INFO     | sufficient remaining disk space (52461305856 B)
[2025-11-25 12:43:32] 2025-11-25 17:42:45,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:43:32] 2025-11-25 17:42:45,511 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:43:32] 2025-11-25 17:42:45,511 | INFO     | update_server=False
[2025-11-25 12:43:32] 2025-11-25 17:42:45,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:43:32] 2025-11-25 17:42:45,775 | INFO     | all job control threads have been joined
[2025-11-25 12:43:32] 2025-11-25 17:42:45,844 | INFO     | all data control threads have been joined
[2025-11-25 12:43:32] 2025-11-25 17:42:46,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:43:32] 2025-11-25 17:42:46,117 | INFO     | all payload control threads have been joined
[2025-11-25 12:43:32] 2025-11-25 17:42:46,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:43:32] 2025-11-25 17:42:46,328 | INFO     | aborting loop
[2025-11-25 12:43:32] 2025-11-25 17:42:46,516 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:46,780 | INFO     | [job] control thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:46,851 | INFO     | [data] control thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,112 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,112 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,113 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,119 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,122 | INFO     | [payload] control thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,281 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,334 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:43:32] 2025-11-25 17:42:47,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:43:32] 2025-11-25 17:42:47,814 | INFO     | [job] validate thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:47,980 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:48,049 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:48,507 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:42:51,849 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:43:32] 2025-11-25 17:43:15,781 | INFO     | PID=3020281 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:43:32] 2025-11-25 17:43:15,781 | INFO     | .. there are 19 such processes running
[2025-11-25 12:43:32] 2025-11-25 17:43:15,781 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:43:32] 2025-11-25 17:43:15,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:43:32] 2025-11-25 17:43:15,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:43:32] 2025-11-25 17:43:16,532 [wrapper] supervise_pilot (15 min periods counter: 83)
[2025-11-25 12:43:32] 2025-11-25 17:43:23,785 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:43:32] 2025-11-25 17:43:24,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276143851328)>', '<ExcThread(monitor, started 140275368322816)>']
[2025-11-25 12:43:32] 2025-11-25 17:43:24,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:43:32] 2025-11-25 17:43:24,910 | INFO     | [monitor] control thread has ended
[2025-11-25 12:43:32] 2025-11-25 17:43:29,151 | INFO     | all workflow threads have been joined
[2025-11-25 12:43:32] 2025-11-25 17:43:29,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:43:32] 2025-11-25 17:43:29,151 | INFO     | traces error code: 0
[2025-11-25 12:43:32] 2025-11-25 17:43:29,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:43:32] 2025-11-25 17:43:30,179 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:43:32] 2025-11-25 17:43:30,182 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:43:32] 2025-11-25 17:43:30,211 [wrapper] pilotpid: 3020281
[2025-11-25 12:43:32] 2025-11-25 17:43:30,214 [wrapper] Pilot exit status: 0
[2025-11-25 12:43:32] 2025-11-25 17:43:30,310 [wrapper] pandaids: 6895373219
[2025-11-25 12:43:32] 2025-11-25 17:43:31,269 [wrapper] cleanup supervisor_pilot 1844759 3020282
[2025-11-25 12:43:32] 2025-11-25 17:43:31,292 [wrapper] Test setup, not cleaning
[2025-11-25 12:43:32] 2025-11-25 17:43:31,329 [wrapper] apfmon messages muted
[2025-11-25 12:43:32] 2025-11-25 17:43:31,382 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:43:32] 2025-11-25 17:43:31,419 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:43:32]  *** Error codes and diagnostics ***
[2025-11-25 12:43:32]     "exeErrorCode": 0,
[2025-11-25 12:43:32]     "exeErrorDiag": "",
[2025-11-25 12:43:32]     "pilotErrorCode": 0,
[2025-11-25 12:43:32]     "pilotErrorDiag": "",
[2025-11-25 12:43:32]  *** Listing of results directory ***
[2025-11-25 12:43:32] total 1298676
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 17:26 queuedata.json
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 17:28 pilot3.tar.gz
[2025-11-25 12:43:32] -rwx------. 1 boincer umatlas     36292 Nov 23 17:29 runpilot2-wrapper.sh
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas       100 Nov 24 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:43:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 16:12 run_atlas
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas       105 Nov 24 16:12 job.xml
[2025-11-25 12:43:32] -rw-r--r--. 2 boincer umatlas 408506217 Nov 24 16:12 EVNT.47483658._001199.pool.root.1
[2025-11-25 12:43:32] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 16:12 input.tar.gz
[2025-11-25 12:43:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:12 start_atlas.sh
[2025-11-25 12:43:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 16:12 shared
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas         0 Nov 24 16:12 boinc_lockfile
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas      2782 Nov 24 16:12 pandaJob.out
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas        57 Nov 24 16:12 setup.sh.local
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas    991801 Nov 24 16:13 agis_schedconf.cvmfs.json
[2025-11-25 12:43:32] drwx------. 5 boincer umatlas      4096 Nov 24 16:13 pilot3
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:53 boinc_task_state.xml
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 12:37 init_data.xml
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas 894201743 Nov 25 12:39 HITS.47556149._001851.pool.root.1
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas      1057 Nov 25 12:41 memory_monitor_summary.json
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:41 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas   2283027 Nov 25 12:42 log.47556149._001851.job.log.tgz.1
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas        95 Nov 25 12:42 pilot_heartbeat.json
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas      8616 Nov 25 12:42 heartbeat.json
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:43 wrapper_checkpoint.txt
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:43 boinc_mmap_file
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas      4824 Nov 25 12:43 pilotlog.txt
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas   9325567 Nov 25 12:43 log.47556149._001851.job.log.1
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas       353 Nov 25 12:43 output.list
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:43 runtime_log
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas  11632640 Nov 25 12:43 result.tar.gz
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 12:43 runtime_log.err
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas       661 Nov 25 12:43 mhOKDmXlXh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcELKDmWb3LPm.diag
[2025-11-25 12:43:32] -rw-r--r--. 1 boincer umatlas     21820 Nov 25 12:43 stderr.txt
[2025-11-25 12:43:32] HITS file was successfully produced:
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas 894201743 Nov 25 12:39 shared/HITS.pool.root.1
[2025-11-25 12:43:32]  *** Contents of shared directory: ***
[2025-11-25 12:43:32] total 1284136
[2025-11-25 12:43:32] -rw-r--r--. 2 boincer umatlas 408506217 Nov 24 16:12 ATLAS.root_0
[2025-11-25 12:43:32] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 16:12 input.tar.gz
[2025-11-25 12:43:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:12 start_atlas.sh
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas 894201743 Nov 25 12:39 HITS.pool.root.1
[2025-11-25 12:43:32] -rw-------. 1 boincer umatlas  11632640 Nov 25 12:43 result.tar.gz
12:43:34 (3016604): run_atlas exited; CPU time 244129.214073
12:43:34 (3016604): called boinc_finish(0)

</stderr_txt>
]]>

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