Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:54:37 (2346438): wrapper (7.7.26015): starting
20:54:37 (2346438): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 20:54:37] Arguments: --nthreads 3
[2025-11-24 20:54:37] Threads: 3
[2025-11-24 20:54:37] Checking for CVMFS
[2025-11-24 20:54:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:54:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:54:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:54:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:54:38] 2.9.2.0 2262833 18 52356 153257 1 88 35065130 36864000 0 130560 0 250447 100.000 2 200 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 20:54:38] CVMFS is ok
[2025-11-24 20:54:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:54:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:54:38] Further information can be found at the LHC@home message board.
[2025-11-24 20:54:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:54:38] Checking for apptainer binary...
[2025-11-24 20:54:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:54:38] Running /usr/bin/apptainer --version
[2025-11-24 20:54:38] apptainer version 1.4.1-1.1
[2025-11-24 20:54:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:54:38] thA335
[2025-11-24 20:54:38] apptainer works
[2025-11-24 20:54:38] Set ATHENA_PROC_NUMBER=3
[2025-11-24 20:54:38] Set ATHENA_CORE_NUMBER=3
[2025-11-24 20:54:38] Starting ATLAS job with PandaID=6895358571
[2025-11-24 20:54:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:58:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:58:55] 2025-11-24 19:58:07,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:58:55] 2025-11-24 19:58:07,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:58:55] 2025-11-24 19:58:07,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:58:55] 2025-11-24 19:58:07,313 | INFO     | aborting loop
[2025-11-24 20:58:55] 2025-11-24 19:58:08,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:58:55] 2025-11-24 19:58:08,258 | INFO     | all job control threads have been joined
[2025-11-24 20:58:55] 2025-11-24 19:58:08,318 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,319 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,320 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,323 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,357 | INFO     | all data control threads have been joined
[2025-11-24 20:58:55] 2025-11-24 19:58:08,374 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,424 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,671 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:08,796 | INFO     | all payload control threads have been joined
[2025-11-24 20:58:55] 2025-11-24 19:58:09,264 | INFO     | [job] control thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:09,346 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:09,363 | INFO     | [data] control thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:09,559 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:09,666 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:09,741 | INFO     | [job] validate thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:09,802 | INFO     | [payload] control thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:10,119 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:10,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:58:55] 2025-11-24 19:58:14,424 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:58:55] 2025-11-24 19:58:37,552 | INFO     | PID=2350169 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 20:58:55] 2025-11-24 19:58:37,552 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:58:55] 2025-11-24 19:58:37,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:58:55] 2025-11-24 19:58:37,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:58:55] 2025-11-24 19:58:48,570 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:58:55] 2025-11-24 19:58:50,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258436765504)>', '<ExcThread(monitor, started 140257701906176)>']
[2025-11-24 20:58:55] 2025-11-24 19:58:50,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:58:55] 2025-11-24 19:58:50,621 | INFO     | [monitor] control thread has ended
[2025-11-24 20:58:55] 2025-11-24 19:58:55,305 | INFO     | all workflow threads have been joined
[2025-11-24 20:58:55] 2025-11-24 19:58:55,305 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:58:55] 2025-11-24 19:58:55,306 | INFO     | traces error code: 0
[2025-11-24 20:58:55] 2025-11-24 19:58:55,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:58:55] 2025-11-24 19:58:55,351 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:58:55] 2025-11-24 19:58:55,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:58:55] 2025-11-24 19:58:55,357 [wrapper] pilotpid: 2350169
[2025-11-24 20:58:55] 2025-11-24 19:58:55,360 [wrapper] Pilot exit status: 0
[2025-11-24 20:58:55] 2025-11-24 19:58:55,367 [wrapper] pandaids: 6895358571
[2025-11-24 20:58:55] 2025-11-24 19:58:55,383 [wrapper] cleanup supervisor_pilot 2350175 2350170
[2025-11-24 20:58:55] 2025-11-24 19:58:55,385 [wrapper] Test setup, not cleaning
[2025-11-24 20:58:55] 2025-11-24 19:58:55,388 [wrapper] apfmon messages muted
[2025-11-24 20:58:55] 2025-11-24 19:58:55,390 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:58:55] 2025-11-24 19:58:55,393 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:58:55]  *** Error codes and diagnostics ***
[2025-11-24 20:58:55]     "exeErrorCode": 65,
[2025-11-24 20:58:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 20:58:55]     "pilotErrorCode": 1305,
[2025-11-24 20:58:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 20:58:55]  *** Listing of results directory ***
[2025-11-24 20:58:55] total 404112
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc    576529 Nov 23 13:50 pilot3.tar.gz
[2025-11-24 20:58:55] -rwx------ 1 boinc boinc     36292 Nov 23 13:53 runpilot2-wrapper.sh
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc      5112 Nov 23 13:53 queuedata.json
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc       100 Nov 24 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:58:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 20:54 run_atlas
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc       105 Nov 24 20:54 job.xml
[2025-11-24 20:58:55] -rw-r--r-- 2 boinc boinc 409615635 Nov 24 20:54 EVNT.47483658._000734.pool.root.1
[2025-11-24 20:58:55] -rw-r--r-- 2 boinc boinc    590098 Nov 24 20:54 input.tar.gz
[2025-11-24 20:58:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:54 start_atlas.sh
[2025-11-24 20:58:55] drwxrwx--x 2 boinc boinc      4096 Nov 24 20:54 shared
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:54 boinc_setup_complete
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc      6196 Nov 24 20:54 init_data.xml
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:54 boinc_lockfile
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc      2785 Nov 24 20:54 pandaJob.out
[2025-11-24 20:58:55] -rw------- 1 boinc boinc    991801 Nov 24 20:54 agis_schedconf.cvmfs.json
[2025-11-24 20:58:55] -rw------- 1 boinc boinc   1516227 Nov 24 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:58:55] drwx------ 5 boinc boinc      4096 Nov 24 20:54 pilot3
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc       522 Nov 24 20:55 boinc_task_state.xml
[2025-11-24 20:58:55] -rw------- 1 boinc boinc       954 Nov 24 20:55 memory_monitor_summary.json
[2025-11-24 20:58:55] -rw------- 1 boinc boinc     56282 Nov 24 20:55 log.47556137._007294.job.log.tgz.1
[2025-11-24 20:58:55] -rw------- 1 boinc boinc        95 Nov 24 20:57 pilot_heartbeat.json
[2025-11-24 20:58:55] -rw------- 1 boinc boinc      8415 Nov 24 20:58 heartbeat.json
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc      8192 Nov 24 20:58 boinc_mmap_file
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc        22 Nov 24 20:58 wrapper_checkpoint.txt
[2025-11-24 20:58:55] -rw------- 1 boinc boinc      4752 Nov 24 20:58 pilotlog.txt
[2025-11-24 20:58:55] -rw------- 1 boinc boinc     93891 Nov 24 20:58 log.47556137._007294.job.log.1
[2025-11-24 20:58:55] -rw------- 1 boinc boinc       186 Nov 24 20:58 output.list
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc       620 Nov 24 20:58 runtime_log
[2025-11-24 20:58:55] -rw------- 1 boinc boinc    174080 Nov 24 20:58 result.tar.gz
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc      8744 Nov 24 20:58 runtime_log.err
[2025-11-24 20:58:55] -rw------- 1 boinc boinc       649 Nov 24 20:58 7W0KDmylOh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeXIKDm2Oistn.diag
[2025-11-24 20:58:55] -rw-r--r-- 1 boinc boinc      7704 Nov 24 20:58 stderr.txt
[2025-11-24 20:58:55] No HITS result produced
[2025-11-24 20:58:55]  *** Contents of shared directory: ***
[2025-11-24 20:58:55] total 400788
[2025-11-24 20:58:55] -rw-r--r-- 2 boinc boinc 409615635 Nov 24 20:54 ATLAS.root_0
[2025-11-24 20:58:55] -rw-r--r-- 2 boinc boinc    590098 Nov 24 20:54 input.tar.gz
[2025-11-24 20:58:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:54 start_atlas.sh
[2025-11-24 20:58:55] -rw------- 1 boinc boinc    174080 Nov 24 20:58 result.tar.gz
20:58:57 (2346438): run_atlas exited; CPU time 31.464868
20:58:57 (2346438): called boinc_finish(0)

</stderr_txt>
]]>

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