Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:39:42 (827416): wrapper (7.7.26015): starting
14:39:42 (827416): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:39:42] Arguments: --nthreads 8
[2025-11-24 14:39:42] Threads: 8
[2025-11-24 14:39:42] Checking for CVMFS
[2025-11-24 14:39:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:39:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:39:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:39:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:39:43] 2.13.3.0 12468 27604 358608 153257 2 344 21218157 32947200 31491 16776704 0 108117065 99.415 158219940 33906 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 14:39:43] CVMFS is ok
[2025-11-24 14:39:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:39:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:39:43] Further information can be found at the LHC@home message board.
[2025-11-24 14:39:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:39:43] Checking for apptainer binary...
[2025-11-24 14:39:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:39:43] Running /usr/bin/apptainer --version
[2025-11-24 14:39:43] apptainer version 1.4.4-1.el9
[2025-11-24 14:39:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:39:44] c6-6-8-1.aglt2.org
[2025-11-24 14:39:44] apptainer works
[2025-11-24 14:39:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:39:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:39:44] Starting ATLAS job with PandaID=6895355714
[2025-11-24 14:39:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:12:22 (561800): wrapper (7.7.26015): starting
11:12:22 (561800): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:12:22] Arguments: --nthreads 8
[2025-11-25 11:12:22] Threads: 8
[2025-11-25 11:12:22] This job has been restarted, cleaning up previous attempt
[2025-11-25 11:12:22] Checking for CVMFS
[2025-11-25 11:12:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:12:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:12:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:12:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:12:23] 2.13.3.0 12468 28837 367436 153287 0 371 29475494 32947200 29744 16776704 0 112068734 99.426 160171585 33851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 11:12:23] CVMFS is ok
[2025-11-25 11:12:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:12:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:12:23] Further information can be found at the LHC@home message board.
[2025-11-25 11:12:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:12:23] Checking for apptainer binary...
[2025-11-25 11:12:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:12:23] Running /usr/bin/apptainer --version
[2025-11-25 11:12:23] apptainer version 1.4.4-1.el9
[2025-11-25 11:12:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:12:23] c6-6-8-1.aglt2.org
[2025-11-25 11:12:23] apptainer works
[2025-11-25 11:12:23] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:12:23] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:12:23] Starting ATLAS job with PandaID=6895355714
[2025-11-25 11:12:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:07:48]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:07:48] 2025-11-26 11:06:27,292 | INFO     | time since job start (68028s) is within the limit (172800.0s)
[2025-11-26 06:07:48] 2025-11-26 11:06:29,467 | INFO     | monitor loop #3889: job 0:6895355714 is in state 'finished'
[2025-11-26 06:07:48] 2025-11-26 11:06:29,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:48] 2025-11-26 11:06:29,868 | INFO     | PID=580672 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 06:07:48] 2025-11-26 11:06:29,868 | INFO     | .. there are 41 such processes running
[2025-11-26 06:07:48] 2025-11-26 11:06:30,872 | INFO     | time since job start (68031s) is within the limit (172800.0s)
[2025-11-26 06:07:48] 2025-11-26 11:06:31,973 | INFO     | monitor loop #3890: job 0:6895355714 is in state 'finished'
[2025-11-26 06:07:48] 2025-11-26 11:06:31,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:48] 2025-11-26 11:06:32,901 | INFO     | time since job start (68033s) is within the limit (172800.0s)
[2025-11-26 06:07:48] 2025-11-26 11:06:34,529 | INFO     | monitor loop #3891: job 0:6895355714 is in state 'finished'
[2025-11-26 06:07:48] 2025-11-26 11:06:34,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:48] 2025-11-26 11:06:34,942 | INFO     | time since job start (68035s) is within the limit (172800.0s)
[2025-11-26 06:07:48] 2025-11-26 11:06:35,812 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 06:07:48] 2025-11-26 11:06:35,864 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2621.5075208333333
[2025-11-26 06:07:48] 2025-11-26 11:06:36,024 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895355714/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:07:48] 2025-11-26 11:06:36,025 | INFO     | extracted standard info from prmon json
[2025-11-26 06:07:48] 2025-11-26 11:06:36,025 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:07:48] 2025-11-26 11:06:36,025 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:07:48] 2025-11-26 11:06:36,189 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:07:48] 2025-11-26 11:06:36,191 | INFO     | sum of square deviations: 428706637313.5377
[2025-11-26 06:07:48] 2025-11-26 11:06:36,413 | INFO     | sum of deviations: 810620448013.5999
[2025-11-26 06:07:48] 2025-11-26 11:06:36,413 | INFO     | mean x: 1764121145.8985636
[2025-11-26 06:07:48] 2025-11-26 11:06:36,413 | INFO     | mean y: 2868798.6247755834
[2025-11-26 06:07:48] 2025-11-26 11:06:36,413 | INFO     | intersect: -3332821739.3145614
[2025-11-26 06:07:48] 2025-11-26 11:06:36,415 | INFO     | chi2: 25.99269333581604
[2025-11-26 06:07:48] 2025-11-26 11:06:36,445 | INFO     | sum of square deviations: 422961139852.14246
[2025-11-26 06:07:48] 2025-11-26 11:06:36,644 | INFO     | sum of deviations: 1219322594857.1416
[2025-11-26 06:07:48] 2025-11-26 11:06:36,644 | INFO     | mean x: 1764120993.4093778
[2025-11-26 06:07:48] 2025-11-26 11:06:36,644 | INFO     | mean y: 2879642.8322813343
[2025-11-26 06:07:48] 2025-11-26 11:06:36,644 | INFO     | intersect: -5082770987.099898
[2025-11-26 06:07:48] 2025-11-26 11:06:36,676 | INFO     | chi2: 21.817663920705673
[2025-11-26 06:07:48] 2025-11-26 11:06:36,676 | INFO     | current chi2=21.817663920705673 (change=16.062319364794256 %)
[2025-11-26 06:07:48] 2025-11-26 11:06:36,677 | INFO     | right removable region: 1108
[2025-11-26 06:07:48] 2025-11-26 11:06:36,678 | INFO     | sum of square deviations: 422959780775.40314
[2025-11-26 06:07:48] 2025-11-26 11:06:36,926 | INFO     | sum of deviations: 486414876285.4139
[2025-11-26 06:07:48] 2025-11-26 11:06:36,926 | INFO     | mean x: 1764121298.405771
[2025-11-26 06:07:48] 2025-11-26 11:06:36,926 | INFO     | mean y: 2877393.31018936
[2025-11-26 06:07:48] 2025-11-26 11:06:36,926 | INFO     | intersect: -2025908515.2302868
[2025-11-26 06:07:48] 2025-11-26 11:06:36,928 | INFO     | chi2: 23.626413865923432
[2025-11-26 06:07:48] 2025-11-26 11:06:36,956 | INFO     | current chi2=23.626413865923432 (change=9.103633237699329 %)
[2025-11-26 06:07:48] 2025-11-26 11:06:36,956 | INFO     | left removable region: 10
[2025-11-26 06:07:48] 2025-11-26 11:06:36,957 | INFO     | sum of square deviations: 410499769667.5739
[2025-11-26 06:07:48] 2025-11-26 11:06:36,955 | INFO     | time since job start (68037s) is within the limit (172800.0s)
[2025-11-26 06:07:48] 2025-11-26 11:06:37,066 | INFO     | monitor loop #3892: job 0:6895355714 is in state 'finished'
[2025-11-26 06:07:48] 2025-11-26 11:06:37,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:07:48] 2025-11-26 11:06:37,146 | INFO     | sum of deviations: 858989950757.3944
[2025-11-26 06:07:48] 2025-11-26 11:06:37,147 | INFO     | mean x: 1764121267.9234972
[2025-11-26 06:07:48] 2025-11-26 11:06:37,147 | INFO     | mean y: 2892931.302367942
[2025-11-26 06:07:48] 2025-11-26 11:06:37,147 | INFO     | intersect: -3688613259.5313807
[2025-11-26 06:07:48] 2025-11-26 11:06:37,148 | INFO     | chi2: 18.718017708640946
[2025-11-26 06:07:48] 2025-11-26 11:06:37,149 | INFO     | current memory leak: 2.09 B/s (using 1098 data points, chi2=18.72)
[2025-11-26 06:07:48] 2025-11-26 11:06:37,194 | INFO     | could have reported an average CPU frequency of 2650 MHz (40 samples)
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | ..............................
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . Timing measurements:
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . get job = 0 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . initial setup = 2 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . payload setup = 9 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . stage-in = 0 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . payload execution = 67955 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . stage-out = 9 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,195 | INFO     | . log creation = 2 s
[2025-11-26 06:07:48] 2025-11-26 11:06:37,196 | INFO     | ..............................
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | 
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | job summary report
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | --------------------------------------------------
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | PanDA job id: 6895355714
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | task id: 47556137
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | errors: (none)
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:07:48] 2025-11-26 11:06:38,098 | INFO     | pilot state: finished 
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | transexitcode: 0
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | exeerrorcode: 0
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | exeerrordiag: 
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | exitcode: 0
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | exitmsg: OK
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | cpuconsumptiontime: 276222 s
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | nevents: 1000
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | neventsw: 0
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | pid: 612159
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | pgrp: 612159
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | corecount: 8
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | event service: False
[2025-11-26 06:07:48] 2025-11-26 11:06:38,099 | INFO     | sizes: {0: 2283486, 1: 2284342, 7: 2284604, 12: 2284632, 67969: 2340489, 67980: 2349483, 67981: 2349667, 68022: 2349913}
[2025-11-26 06:07:48] 2025-11-26 11:06:38,100 | INFO     | --------------------------------------------------
[2025-11-26 06:07:48] 2025-11-26 11:06:38,100 | INFO     | 
[2025-11-26 06:07:48] 2025-11-26 11:06:38,100 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,237 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:07:48] 2025-11-26 11:06:38,238 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,239 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:07:48] 2025-11-26 11:06:38,239 | INFO     | job 6895355714 has completed (purged errors)
[2025-11-26 06:07:48] 2025-11-26 11:06:38,239 | INFO     | overall cleanup function is called
[2025-11-26 06:07:48] 2025-11-26 11:06:39,341 | INFO     | --- collectZombieJob: --- 10, [612159]
[2025-11-26 06:07:48] 2025-11-26 11:06:39,341 | INFO     | zombie collector waiting for pid 612159
[2025-11-26 06:07:48] 2025-11-26 11:06:39,341 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:07:48] 2025-11-26 11:06:39,342 | INFO     | collected zombie processes
[2025-11-26 06:07:48] 2025-11-26 11:06:39,342 | INFO     | will attempt to kill all subprocesses of pid=612159
[2025-11-26 06:07:48] 2025-11-26 11:06:40,530 | INFO     | process IDs to be killed: [612159] (in reverse order)
[2025-11-26 06:07:48] 2025-11-26 11:06:40,921 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:07:48] 2025-11-26 11:06:40,925 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:07:48] 2025-11-26 11:06:40,966 | INFO     | did not find any defunct processes belonging to 612159
[2025-11-26 06:07:48] 2025-11-26 11:06:41,015 | INFO     | did not find any defunct processes belonging to 612159
[2025-11-26 06:07:48] 2025-11-26 11:06:41,018 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:07:48] 2025-11-26 11:06:41,019 | INFO     | ready for new job
[2025-11-26 06:07:48] 2025-11-26 11:06:41,019 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:07:48] 2025-11-26 11:06:41,027 | INFO     | ***************************************
[2025-11-26 06:07:48] 2025-11-26 11:06:41,027 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:07:48] 2025-11-26 11:06:41,027 | INFO     | ***************************************
[2025-11-26 06:07:48] 2025-11-26 11:06:41,027 | INFO     | 
[2025-11-26 06:07:48] 2025-11-26 11:06:41,041 | INFO     | architecture information:
[2025-11-26 06:07:48] 2025-11-26 11:06:41,045 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:07:48] 2025-11-26 11:06:41,089 | INFO     | cat /etc/os-release:
[2025-11-26 06:07:48] NAME="CentOS Linux"
[2025-11-26 06:07:48] VERSION="7 (Core)"
[2025-11-26 06:07:48] ID="centos"
[2025-11-26 06:07:48] ID_LIKE="rhel fedora"
[2025-11-26 06:07:48] VERSION_ID="7"
[2025-11-26 06:07:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:07:48] ANSI_COLOR="0;31"
[2025-11-26 06:07:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:07:48] HOME_URL="https://www.centos.org/"
[2025-11-26 06:07:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:07:48] 
[2025-11-26 06:07:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:07:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:07:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:07:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:07:48] 
[2025-11-26 06:07:48] 2025-11-26 11:06:41,089 | INFO     | ***************************************
[2025-11-26 06:07:48] 2025-11-26 11:06:41,592 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 06:07:48] 2025-11-26 11:06:41,690 | INFO     | sufficient remaining disk space (67492642816 B)
[2025-11-26 06:07:48] 2025-11-26 11:06:41,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:07:48] 2025-11-26 11:06:41,690 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:07:48] 2025-11-26 11:06:41,690 | INFO     | update_server=False
[2025-11-26 06:07:48] 2025-11-26 11:06:41,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:07:48] 2025-11-26 11:06:41,827 | INFO     | all job control threads have been joined
[2025-11-26 06:07:48] 2025-11-26 11:06:42,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:07:48] 2025-11-26 11:06:42,081 | INFO     | all payload control threads have been joined
[2025-11-26 06:07:48] 2025-11-26 11:06:42,191 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 06:07:48] 2025-11-26 11:06:42,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 06:07:48] 2025-11-26 11:06:42,192 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:07:48] 2025-11-26 11:06:42,192 | INFO     | will abort loop
[2025-11-26 06:07:48] 2025-11-26 11:06:42,696 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:42,749 | INFO     | all data control threads have been joined
[2025-11-26 06:07:48] 2025-11-26 11:06:42,833 | INFO     | [job] control thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:42,923 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:43,016 | INFO     | [job] validate thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:43,087 | INFO     | [payload] control thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:43,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:07:48] 2025-11-26 11:06:43,168 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:43,200 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:43,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:07:48] 2025-11-26 11:06:43,515 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:43,755 | INFO     | [data] control thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:44,025 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:44,026 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:44,026 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:44,027 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:44,130 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:44,249 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:06:47,444 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:07:48] 2025-11-26 11:07:12,014 | INFO     | PID=580672 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 06:07:48] 2025-11-26 11:07:12,014 | INFO     | .. there are 41 such processes running
[2025-11-26 06:07:48] 2025-11-26 11:07:12,015 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:07:48] 2025-11-26 11:07:12,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:07:48] 2025-11-26 11:07:12,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:07:48] 2025-11-26 11:07:41,187 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:07:48] 2025-11-26 11:07:41,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930599929664)>', '<ExcThread(monitor, started 139929824782080)>']
[2025-11-26 06:07:48] 2025-11-26 11:07:42,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:07:48] 2025-11-26 11:07:42,314 | INFO     | [monitor] control thread has ended
[2025-11-26 06:07:48] 2025-11-26 11:07:46,365 | INFO     | all workflow threads have been joined
[2025-11-26 06:07:48] 2025-11-26 11:07:46,365 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:07:48] 2025-11-26 11:07:46,366 | INFO     | traces error code: 0
[2025-11-26 06:07:48] 2025-11-26 11:07:46,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:07:48] 2025-11-26 11:07:46,710 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:07:48] 2025-11-26 11:07:46,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:07:48] 2025-11-26 11:07:46,747 [wrapper] pilotpid: 580672
[2025-11-26 06:07:48] 2025-11-26 11:07:46,786 [wrapper] Pilot exit status: 0
[2025-11-26 06:07:48] 2025-11-26 11:07:46,943 [wrapper] pandaids: 6895355714 6895355714
[2025-11-26 06:07:48] 2025-11-26 11:07:47,208 [wrapper] cleanup supervisor_pilot  234076 580673
[2025-11-26 06:07:48] 2025-11-26 11:07:47,246 [wrapper] Test setup, not cleaning
[2025-11-26 06:07:48] 2025-11-26 11:07:47,261 [wrapper] apfmon messages muted
[2025-11-26 06:07:48] 2025-11-26 11:07:47,281 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:07:48] 2025-11-26 11:07:47,307 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:07:48]  *** Error codes and diagnostics ***
[2025-11-26 06:07:48]     "exeErrorCode": 0,
[2025-11-26 06:07:48]     "exeErrorDiag": "",
[2025-11-26 06:07:48]     "pilotErrorCode": 0,
[2025-11-26 06:07:48]     "pilotErrorDiag": "",
[2025-11-26 06:07:48]  *** Listing of results directory ***
[2025-11-26 06:07:48] total 1732084
[2025-11-26 06:07:48] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-26 06:07:48] -rwx------ 1 boincer umatlas     36292 Nov 23 03:28 runpilot2-wrapper.sh
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 03:28 queuedata.json
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas       100 Nov 24 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:07:48] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 14:39 run_atlas
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas       105 Nov 24 14:39 job.xml
[2025-11-26 06:07:48] -rw-r--r-- 3 boincer umatlas 411829867 Nov 24 14:39 EVNT.47483658._000672.pool.root.1
[2025-11-26 06:07:48] -rw-r--r-- 3 boincer umatlas 411829867 Nov 24 14:39 ATLAS.root_0
[2025-11-26 06:07:48] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:39 start_atlas.sh
[2025-11-26 06:07:48] drwxrwx--x 2 boincer umatlas      4096 Nov 24 14:39 shared
[2025-11-26 06:07:48] -rw-r--r-- 2 boincer umatlas    590099 Nov 24 14:39 input.tar.gz
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas         0 Nov 24 14:39 boinc_lockfile
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 11:12 pandaJob.out
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas        57 Nov 25 11:12 setup.sh.local
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas    991909 Nov 25 11:12 agis_schedconf.cvmfs.json
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas       534 Nov 26 05:10 boinc_task_state.xml
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas      6878 Nov 26 06:00 init_data.xml
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas 924986713 Nov 26 06:01 HITS.47556137._006677.pool.root.1
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas      1070 Nov 26 06:05 memory_monitor_summary.json
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas   1516240 Nov 26 06:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas   2206467 Nov 26 06:05 log.47556137._006677.job.log.tgz.1
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas      8643 Nov 26 06:06 heartbeat.json
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas        96 Nov 26 06:07 pilot_heartbeat.json
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 06:07 boinc_mmap_file
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas        30 Nov 26 06:07 wrapper_checkpoint.txt
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas      5009 Nov 26 06:07 pilotlog.txt
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas   8333507 Nov 26 06:07 log.47556137._006677.job.log.1
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas       353 Nov 26 06:07 output.list
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas       620 Nov 26 06:07 runtime_log
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas  10557440 Nov 26 06:07 result.tar.gz
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 06:07 runtime_log.err
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas       789 Nov 26 06:07 023MDmCdKh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhkKKDmWMea4m.diag
[2025-11-26 06:07:48] -rw-r--r-- 1 boincer umatlas     23982 Nov 26 06:07 stderr.txt
[2025-11-26 06:07:48] HITS file was successfully produced:
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas 924986713 Nov 26 06:01 shared/HITS.pool.root.1
[2025-11-26 06:07:48]  *** Contents of shared directory: ***
[2025-11-26 06:07:48] total 1316404
[2025-11-26 06:07:48] -rw-r--r-- 3 boincer umatlas 411829867 Nov 24 14:39 ATLAS.root_0
[2025-11-26 06:07:48] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:39 start_atlas.sh
[2025-11-26 06:07:48] -rw-r--r-- 2 boincer umatlas    590099 Nov 24 14:39 input.tar.gz
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas 924986713 Nov 26 06:01 HITS.pool.root.1
[2025-11-26 06:07:48] -rw------- 1 boincer umatlas  10557440 Nov 26 06:07 result.tar.gz
06:07:49 (561800): run_atlas exited; CPU time 278835.738300
06:07:49 (561800): called boinc_finish(0)

</stderr_txt>
]]>

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