Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:37 (3727): wrapper (7.7.26015): starting
01:38:37 (3727): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:38:37] Arguments: --nthreads 8
[2025-11-27 01:38:37] Threads: 8
[2025-11-27 01:38:37] Checking for CVMFS
[2025-11-27 01:38:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:38:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:38:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:38:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:38:40] 2.11.2.0 27053 172906 134760 153341 3 85 17272721 25165824 1288 130560 12 59466255 99.898 31937678 2225 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:38:40] CVMFS is ok
[2025-11-27 01:38:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:38:40] Checking for apptainer binary...
[2025-11-27 01:38:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:38:40] Running /usr/bin/apptainer --version
[2025-11-27 01:38:40] apptainer version 1.3.2-1.el7
[2025-11-27 01:38:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:38:51] cg-vwn373.simple-grid.lan
[2025-11-27 01:38:51] apptainer works
[2025-11-27 01:38:51] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:38:51] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:38:52] Starting ATLAS job with PandaID=6895372682
[2025-11-27 01:38:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:00:48]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:00:48] 2025-11-28 00:00:00,894 | INFO     | time since job start (83821s) is within the limit (172800.0s)
[2025-11-28 01:00:48] 2025-11-28 00:00:01,488 | INFO     | monitor loop #5654: job 0:6895372682 is in state 'finished'
[2025-11-28 01:00:48] 2025-11-28 00:00:01,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:00:48] 2025-11-28 00:00:02,902 | INFO     | time since job start (83823s) is within the limit (172800.0s)
[2025-11-28 01:00:48] 2025-11-28 00:00:03,993 | INFO     | monitor loop #5655: job 0:6895372682 is in state 'finished'
[2025-11-28 01:00:48] 2025-11-28 00:00:03,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:00:48] 2025-11-28 00:00:04,910 | INFO     | time since job start (83825s) is within the limit (172800.0s)
[2025-11-28 01:00:48] 2025-11-28 00:00:06,137 | INFO     | PID=7503 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 01:00:48] 2025-11-28 00:00:06,137 | INFO     | .. there are 9 such processes running
[2025-11-28 01:00:48] 2025-11-28 00:00:06,499 | INFO     | monitor loop #5656: job 0:6895372682 is in state 'finished'
[2025-11-28 01:00:48] 2025-11-28 00:00:06,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:00:48] 2025-11-28 00:00:07,138 | INFO     | time since job start (83828s) is within the limit (172800.0s)
[2025-11-28 01:00:48] 2025-11-28 00:00:09,006 | INFO     | monitor loop #5657: job 0:6895372682 is in state 'finished'
[2025-11-28 01:00:48] 2025-11-28 00:00:09,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:00:48] 2025-11-28 00:00:09,145 | INFO     | time since job start (83830s) is within the limit (172800.0s)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 01:00:48] 2025-11-28 00:00:10,314 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 01:00:48] 2025-11-28 00:00:10,317 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6895372682/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,318 | INFO     | extracted standard info from prmon json
[2025-11-28 01:00:48] 2025-11-28 00:00:10,318 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:00:48] 2025-11-28 00:00:10,318 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:00:48] 2025-11-28 00:00:10,359 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:00:48] 2025-11-28 00:00:10,361 | INFO     | sum of square deviations: 788633742366.1072
[2025-11-28 01:00:48] 2025-11-28 00:00:10,441 | INFO     | sum of deviations: 2944218499581.428
[2025-11-28 01:00:48] 2025-11-28 00:00:10,441 | INFO     | mean x: 1764246300.0710623
[2025-11-28 01:00:48] 2025-11-28 00:00:10,441 | INFO     | mean y: 2840610.4285714286
[2025-11-28 01:00:48] 2025-11-28 00:00:10,441 | INFO     | intersect: -6583647280.519352
[2025-11-28 01:00:48] 2025-11-28 00:00:10,446 | INFO     | chi2: 20.095594698964558
[2025-11-28 01:00:48] 2025-11-28 00:00:10,448 | INFO     | sum of square deviations: 779999570560.3503
[2025-11-28 01:00:48] 2025-11-28 00:00:10,523 | INFO     | sum of deviations: 3395523744603.3228
[2025-11-28 01:00:48] 2025-11-28 00:00:10,523 | INFO     | mean x: 1764246147.575
[2025-11-28 01:00:48] 2025-11-28 00:00:10,523 | INFO     | mean y: 2848580.433088235
[2025-11-28 01:00:48] 2025-11-28 00:00:10,523 | INFO     | intersect: -7677334731.86317
[2025-11-28 01:00:48] 2025-11-28 00:00:10,525 | INFO     | chi2: 16.874051222050994
[2025-11-28 01:00:48] 2025-11-28 00:00:10,525 | INFO     | current chi2=16.874051222050994 (change=16.03109300905415 %)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,525 | INFO     | right removable region: 1359
[2025-11-28 01:00:48] 2025-11-28 00:00:10,527 | INFO     | sum of square deviations: 779998678740.3497
[2025-11-28 01:00:48] 2025-11-28 00:00:10,583 | INFO     | sum of deviations: 2387692310471.098
[2025-11-28 01:00:48] 2025-11-28 00:00:10,583 | INFO     | mean x: 1764246452.575
[2025-11-28 01:00:48] 2025-11-28 00:00:10,583 | INFO     | mean y: 2850438.244117647
[2025-11-28 01:00:48] 2025-11-28 00:00:10,583 | INFO     | intersect: -5397771131.259224
[2025-11-28 01:00:48] 2025-11-28 00:00:10,585 | INFO     | chi2: 15.69333207450595
[2025-11-28 01:00:48] 2025-11-28 00:00:10,585 | INFO     | current chi2=15.69333207450595 (change=21.906605355080323 %)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,585 | INFO     | left removable region: 10
[2025-11-28 01:00:48] 2025-11-28 00:00:10,587 | INFO     | sum of square deviations: 761224946139.5352
[2025-11-28 01:00:48] 2025-11-28 00:00:10,650 | INFO     | sum of deviations: 2490366291793.187
[2025-11-28 01:00:48] 2025-11-28 00:00:10,650 | INFO     | mean x: 1764246422.0837657
[2025-11-28 01:00:48] 2025-11-28 00:00:10,651 | INFO     | mean y: 2868650.679762787
[2025-11-28 01:00:48] 2025-11-28 00:00:10,651 | INFO     | intersect: -5768907277.389705
[2025-11-28 01:00:48] 2025-11-28 00:00:10,652 | INFO     | chi2: 8.647996523823236
[2025-11-28 01:00:48] 2025-11-28 00:00:10,653 | INFO     | current memory leak: 3.27 B/s (using 1349 data points, chi2=8.65)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,654 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | ..............................
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . Timing measurements:
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . get job = 0 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . initial setup = 13 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . payload setup = 162 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . stage-in = 0 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . payload execution = 83371 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,655 | INFO     | . stage-out = 5 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,656 | INFO     | . log creation = 2 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,656 | INFO     | ..............................
[2025-11-28 01:00:48] 2025-11-28 00:00:10,928 | INFO     | 
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | job summary report
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | --------------------------------------------------
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | PanDA job id: 6895372682
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | task id: 47556137
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | errors: (none)
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | pilot state: finished 
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | transexitcode: 0
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | exeerrorcode: 0
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | exeerrordiag: 
[2025-11-28 01:00:48] 2025-11-28 00:00:10,929 | INFO     | exitcode: 0
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | exitmsg: OK
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | cpuconsumptiontime: 313843 s
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | nevents: 1000
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | neventsw: 0
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | pid: 14076
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | pgrp: 14076
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | corecount: 8
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | event service: False
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 24: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 77: 2284645, 88: 2284701, 90: 2285271, 99
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | --------------------------------------------------
[2025-11-28 01:00:48] 2025-11-28 00:00:10,930 | INFO     | 
[2025-11-28 01:00:48] 2025-11-28 00:00:10,931 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-11-28 01:00:48] 2025-11-28 00:00:11,156 | INFO     | time since job start (83832s) is within the limit (172800.0s)
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,652 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:00:48] 2025-11-28 00:00:11,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:00:48] 2025-11-28 00:00:11,653 | INFO     | job 6895372682 has completed (purged errors)
[2025-11-28 01:00:48] 2025-11-28 00:00:11,653 | INFO     | overall cleanup function is called
[2025-11-28 01:00:48] 2025-11-28 00:00:12,670 | INFO     | --- collectZombieJob: --- 10, [14076]
[2025-11-28 01:00:48] 2025-11-28 00:00:12,671 | INFO     | zombie collector waiting for pid 14076
[2025-11-28 01:00:48] 2025-11-28 00:00:12,671 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:00:48] 2025-11-28 00:00:12,671 | INFO     | collected zombie processes
[2025-11-28 01:00:48] 2025-11-28 00:00:12,671 | INFO     | will attempt to kill all subprocesses of pid=14076
[2025-11-28 01:00:48] 2025-11-28 00:00:12,792 | INFO     | process IDs to be killed: [14076] (in reverse order)
[2025-11-28 01:00:48] 2025-11-28 00:00:13,409 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:00:48] 2025-11-28 00:00:13,409 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:00:48] 2025-11-28 00:00:13,413 | INFO     | did not find any defunct processes belonging to 14076
[2025-11-28 01:00:48] 2025-11-28 00:00:13,415 | INFO     | did not find any defunct processes belonging to 14076
[2025-11-28 01:00:48] 2025-11-28 00:00:13,471 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:00:48] 2025-11-28 00:00:13,471 | INFO     | ready for new job
[2025-11-28 01:00:48] 2025-11-28 00:00:13,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:00:48] 2025-11-28 00:00:13,481 | INFO     | ***************************************
[2025-11-28 01:00:48] 2025-11-28 00:00:13,481 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:00:48] 2025-11-28 00:00:13,481 | INFO     | ***************************************
[2025-11-28 01:00:48] 2025-11-28 00:00:13,481 | INFO     | 
[2025-11-28 01:00:48] 2025-11-28 00:00:13,482 | INFO     | pilot is running in a VM
[2025-11-28 01:00:48] 2025-11-28 00:00:13,482 | INFO     | architecture information:
[2025-11-28 01:00:48] 2025-11-28 00:00:13,488 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:00:48] 2025-11-28 00:00:13,712 | INFO     | cat /etc/os-release:
[2025-11-28 01:00:48] NAME="CentOS Linux"
[2025-11-28 01:00:48] VERSION="7 (Core)"
[2025-11-28 01:00:48] ID="centos"
[2025-11-28 01:00:48] ID_LIKE="rhel fedora"
[2025-11-28 01:00:48] VERSION_ID="7"
[2025-11-28 01:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:00:48] ANSI_COLOR="0;31"
[2025-11-28 01:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:00:48] HOME_URL="https://www.centos.org/"
[2025-11-28 01:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:00:48] 
[2025-11-28 01:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:00:48] 
[2025-11-28 01:00:48] 2025-11-28 00:00:13,712 | INFO     | ***************************************
[2025-11-28 01:00:48] 2025-11-28 00:00:14,216 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-11-28 01:00:48] 2025-11-28 00:00:14,464 | INFO     | sufficient remaining disk space (495249784832 B)
[2025-11-28 01:00:48] 2025-11-28 00:00:14,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:00:48] 2025-11-28 00:00:14,464 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:00:48] 2025-11-28 00:00:14,465 | INFO     | update_server=False
[2025-11-28 01:00:48] 2025-11-28 00:00:14,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:00:48] 2025-11-28 00:00:14,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:00:48] 2025-11-28 00:00:14,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:00:48] 2025-11-28 00:00:14,809 | INFO     | all payload control threads have been joined
[2025-11-28 01:00:48] 2025-11-28 00:00:14,939 | INFO     | all data control threads have been joined
[2025-11-28 01:00:48] 2025-11-28 00:00:15,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:00:48] 2025-11-28 00:00:15,025 | INFO     | aborting loop
[2025-11-28 01:00:48] 2025-11-28 00:00:15,471 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:15,506 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:15,579 | INFO     | all job control threads have been joined
[2025-11-28 01:00:48] 2025-11-28 00:00:15,614 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:15,685 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:15,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:00:48] 2025-11-28 00:00:15,816 | INFO     | [payload] control thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:15,945 | INFO     | [data] control thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,031 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,261 | INFO     | [job] validate thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,340 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,427 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,447 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,477 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,585 | INFO     | [job] control thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,631 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:16,812 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:18,480 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:00:48] 2025-11-28 00:00:25,327 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:00:48] 2025-11-28 00:00:27,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140021983012672)>', '<ExcThread(monitor, started 140021529028352)>']
[2025-11-28 01:00:48] 2025-11-28 00:00:32,156 | INFO     | all workflow threads have been joined
[2025-11-28 01:00:48] 2025-11-28 00:00:32,157 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:00:48] 2025-11-28 00:00:32,157 | INFO     | traces error code: 0
[2025-11-28 01:00:48] 2025-11-28 00:00:32,157 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:00:48] 2025-11-28 00:00:44,330 | INFO     | PID=7503 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 01:00:48] 2025-11-28 00:00:44,330 | INFO     | .. there are 9 such processes running
[2025-11-28 01:00:48] 2025-11-28 00:00:44,330 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:00:48] 2025-11-28 00:00:44,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:00:48] 2025-11-28 00:00:44,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:00:48] 2025-11-28 00:00:44,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:00:48] 2025-11-28 00:00:44,331 | INFO     | [monitor] control thread has ended
[2025-11-28 01:00:48] 2025-11-28 00:00:44,594 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:00:48] 2025-11-28 00:00:44,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:00:48] 2025-11-28 00:00:44,824 [wrapper] pilotpid: 7503
[2025-11-28 01:00:48] 2025-11-28 00:00:44,910 [wrapper] Pilot exit status: 0
[2025-11-28 01:00:48] 2025-11-28 00:00:45,210 [wrapper] pandaids: 6895372682
[2025-11-28 01:00:48] 2025-11-28 00:00:46,078 [wrapper] cleanup supervisor_pilot 15986 7504
[2025-11-28 01:00:48] 2025-11-28 00:00:46,167 [wrapper] Test setup, not cleaning
[2025-11-28 01:00:48] 2025-11-28 00:00:46,286 [wrapper] apfmon messages muted
[2025-11-28 01:00:48] 2025-11-28 00:00:46,370 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:00:48] 2025-11-28 00:00:46,408 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:00:48]  *** Error codes and diagnostics ***
[2025-11-28 01:00:48]     "exeErrorCode": 0,
[2025-11-28 01:00:48]     "exeErrorDiag": "",
[2025-11-28 01:00:48]     "pilotErrorCode": 0,
[2025-11-28 01:00:48]     "pilotErrorDiag": "",
[2025-11-28 01:00:48]  *** Listing of results directory ***
[2025-11-28 01:00:48] total 1334760
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc      5112 Nov 23 23:10 queuedata.json
[2025-11-28 01:00:48] -rwx------. 1 boinc boinc     36292 Nov 23 23:10 runpilot2-wrapper.sh
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc    576529 Nov 23 23:10 pilot3.tar.gz
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:00:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:38 run_atlas
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:38 job.xml
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc      6393 Nov 27 01:38 init_data.xml
[2025-11-28 01:00:48] -rw-r--r--. 2 boinc boinc 413204155 Nov 27 01:38 EVNT.47483658._000912.pool.root.1
[2025-11-28 01:00:48] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:38 start_atlas.sh
[2025-11-28 01:00:48] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:38 shared
[2025-11-28 01:00:48] -rw-r--r--. 2 boinc boinc    590093 Nov 27 01:38 input.tar.gz
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:38 boinc_lockfile
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc      2785 Nov 27 01:38 pandaJob.out
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc    991546 Nov 27 01:42 agis_schedconf.cvmfs.json
[2025-11-28 01:00:48] drwx------. 5 boinc boinc      4096 Nov 27 01:43 pilot3
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:36 boinc_task_state.xml
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc 922487101 Nov 28 00:57 HITS.47556137._008982.pool.root.1
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc      1031 Nov 28 00:58 memory_monitor_summary.json
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc   1516240 Nov 28 00:58 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc   2443067 Nov 28 00:58 log.47556137._008982.job.log.tgz.1
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc        95 Nov 28 01:00 pilot_heartbeat.json
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc      8629 Nov 28 01:00 heartbeat.json
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc        29 Nov 28 01:00 wrapper_checkpoint.txt
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc      8192 Nov 28 01:00 boinc_mmap_file
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc       819 Nov 28 01:00 pilotlog.txt
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc  11160146 Nov 28 01:00 log.47556137._008982.job.log.1
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc       353 Nov 28 01:00 output.list
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc       620 Nov 28 01:00 runtime_log
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc  13619200 Nov 28 01:00 result.tar.gz
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc      8833 Nov 28 01:00 runtime_log.err
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc       662 Nov 28 01:00 pUaLDmySXh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtmIKDms7G0Fm.diag
[2025-11-28 01:00:48] -rw-r--r--. 1 boinc boinc     21492 Nov 28 01:00 stderr.txt
[2025-11-28 01:00:48] HITS file was successfully produced:
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc 922487101 Nov 28 00:57 shared/HITS.pool.root.1
[2025-11-28 01:00:48]  *** Contents of shared directory: ***
[2025-11-28 01:00:48] total 1318284
[2025-11-28 01:00:48] -rw-r--r--. 2 boinc boinc 413204155 Nov 27 01:38 ATLAS.root_0
[2025-11-28 01:00:48] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:38 start_atlas.sh
[2025-11-28 01:00:48] -rw-r--r--. 2 boinc boinc    590093 Nov 27 01:38 input.tar.gz
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc 922487101 Nov 28 00:57 HITS.pool.root.1
[2025-11-28 01:00:48] -rw-------. 1 boinc boinc  13619200 Nov 28 01:00 result.tar.gz
01:00:50 (3727): run_atlas exited; CPU time 314415.413216
01:00:50 (3727): called boinc_finish(0)

</stderr_txt>
]]>

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