Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:58:59 (2367236): wrapper (7.7.26015): starting
20:58:59 (2367236): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 20:58:59] Arguments: --nthreads 3
[2025-11-24 20:58:59] Threads: 3
[2025-11-24 20:58:59] Checking for CVMFS
[2025-11-24 20:58:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:58:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:58:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:59:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:59:00] 2.9.2.0 2262833 23 53028 153257 0 88 35065130 36864000 0 130560 0 313074 100.000 3 230 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 20:59:00] CVMFS is ok
[2025-11-24 20:59:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:59:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:59:00] Further information can be found at the LHC@home message board.
[2025-11-24 20:59:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:59:00] Checking for apptainer binary...
[2025-11-24 20:59:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:59:00] Running /usr/bin/apptainer --version
[2025-11-24 20:59:00] apptainer version 1.4.1-1.1
[2025-11-24 20:59:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:59:00] thA335
[2025-11-24 20:59:00] apptainer works
[2025-11-24 20:59:00] Set ATHENA_PROC_NUMBER=3
[2025-11-24 20:59:00] Set ATHENA_CORE_NUMBER=3
[2025-11-24 20:59:00] Starting ATLAS job with PandaID=6895351813
[2025-11-24 20:59:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:03:19]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:03:19] 2025-11-24 20:02:32,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:03:19] 2025-11-24 20:02:32,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:03:19] 2025-11-24 20:02:32,580 | INFO     | aborting loop
[2025-11-24 21:03:19] 2025-11-24 20:02:32,609 | INFO     | all job control threads have been joined
[2025-11-24 21:03:19] 2025-11-24 20:02:32,723 | INFO     | all data control threads have been joined
[2025-11-24 21:03:19] 2025-11-24 20:02:33,129 | INFO     | all payload control threads have been joined
[2025-11-24 21:03:19] 2025-11-24 20:02:33,585 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:33,586 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:33,587 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:33,615 | INFO     | [job] control thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:33,729 | INFO     | [data] control thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,037 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,098 | INFO     | [job] validate thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,135 | INFO     | [payload] control thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,186 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,247 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,586 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,609 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,719 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:03:19] 2025-11-24 20:02:34,884 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:34,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:02:38,798 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:03:19] 2025-11-24 20:03:12,856 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:03:19] 2025-11-24 20:03:14,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303831603008)>', '<ExcThread(monitor, started 140303210108672)>']
[2025-11-24 21:03:19] 2025-11-24 20:03:14,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:03:19] 2025-11-24 20:03:14,801 | INFO     | [monitor] control thread has ended
[2025-11-24 21:03:19] 2025-11-24 20:03:19,670 | INFO     | all workflow threads have been joined
[2025-11-24 21:03:19] 2025-11-24 20:03:19,671 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:03:19] 2025-11-24 20:03:19,671 | INFO     | traces error code: 0
[2025-11-24 21:03:19] 2025-11-24 20:03:19,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:03:19] 2025-11-24 20:03:19,718 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:03:19] 2025-11-24 20:03:19,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:03:19] 2025-11-24 20:03:19,725 [wrapper] pilotpid: 2370966
[2025-11-24 21:03:19] 2025-11-24 20:03:19,728 [wrapper] Pilot exit status: 0
[2025-11-24 21:03:19] 2025-11-24 20:03:19,735 [wrapper] pandaids: 6895351813
[2025-11-24 21:03:19] 2025-11-24 20:03:19,751 [wrapper] cleanup supervisor_pilot 2370972 2370967
[2025-11-24 21:03:19] 2025-11-24 20:03:19,755 [wrapper] Test setup, not cleaning
[2025-11-24 21:03:19] 2025-11-24 20:03:19,758 [wrapper] apfmon messages muted
[2025-11-24 21:03:19] 2025-11-24 20:03:19,761 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:03:19] 2025-11-24 20:03:19,764 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:03:19]  *** Error codes and diagnostics ***
[2025-11-24 21:03:19]     "exeErrorCode": 65,
[2025-11-24 21:03:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 21:03:19]     "pilotErrorCode": 1305,
[2025-11-24 21:03:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 21:03:19]  *** Listing of results directory ***
[2025-11-24 21:03:19] total 405092
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc    576529 Nov 23 02:11 pilot3.tar.gz
[2025-11-24 21:03:19] -rwx------ 1 boinc boinc     36292 Nov 23 02:17 runpilot2-wrapper.sh
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc      5112 Nov 23 02:17 queuedata.json
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc       100 Nov 24 20:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:03:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 20:58 run_atlas
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc       105 Nov 24 20:58 job.xml
[2025-11-24 21:03:19] -rw-r--r-- 2 boinc boinc 410609032 Nov 24 20:58 EVNT.47483658._000566.pool.root.1
[2025-11-24 21:03:19] -rw-r--r-- 2 boinc boinc    590103 Nov 24 20:58 input.tar.gz
[2025-11-24 21:03:19] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:58 start_atlas.sh
[2025-11-24 21:03:19] drwxrwx--x 2 boinc boinc      4096 Nov 24 20:58 shared
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:58 boinc_setup_complete
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc      6196 Nov 24 20:58 init_data.xml
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc         0 Nov 24 20:58 boinc_lockfile
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc      2786 Nov 24 20:59 pandaJob.out
[2025-11-24 21:03:19] -rw------- 1 boinc boinc    991801 Nov 24 20:59 agis_schedconf.cvmfs.json
[2025-11-24 21:03:19] -rw------- 1 boinc boinc   1516227 Nov 24 20:59 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:03:19] drwx------ 5 boinc boinc      4096 Nov 24 20:59 pilot3
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc       523 Nov 24 21:00 boinc_task_state.xml
[2025-11-24 21:03:19] -rw------- 1 boinc boinc       954 Nov 24 21:00 memory_monitor_summary.json
[2025-11-24 21:03:19] -rw------- 1 boinc boinc     55597 Nov 24 21:00 log.47556137._005620.job.log.tgz.1
[2025-11-24 21:03:19] -rw------- 1 boinc boinc        95 Nov 24 21:02 pilot_heartbeat.json
[2025-11-24 21:03:19] -rw------- 1 boinc boinc      8404 Nov 24 21:02 heartbeat.json
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc        23 Nov 24 21:03 wrapper_checkpoint.txt
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc      8192 Nov 24 21:03 boinc_mmap_file
[2025-11-24 21:03:19] -rw------- 1 boinc boinc      4556 Nov 24 21:03 pilotlog.txt
[2025-11-24 21:03:19] -rw------- 1 boinc boinc     94293 Nov 24 21:03 log.47556137._005620.job.log.1
[2025-11-24 21:03:19] -rw------- 1 boinc boinc       186 Nov 24 21:03 output.list
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc       620 Nov 24 21:03 runtime_log
[2025-11-24 21:03:19] -rw------- 1 boinc boinc    174080 Nov 24 21:03 result.tar.gz
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc      8744 Nov 24 21:03 runtime_log.err
[2025-11-24 21:03:19] -rw------- 1 boinc boinc       649 Nov 24 21:03 nWoKDmZuDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKWKKDmTQgjZm.diag
[2025-11-24 21:03:19] -rw-r--r-- 1 boinc boinc      6879 Nov 24 21:03 stderr.txt
[2025-11-24 21:03:19] No HITS result produced
[2025-11-24 21:03:19]  *** Contents of shared directory: ***
[2025-11-24 21:03:19] total 401760
[2025-11-24 21:03:19] -rw-r--r-- 2 boinc boinc 410609032 Nov 24 20:58 ATLAS.root_0
[2025-11-24 21:03:19] -rw-r--r-- 2 boinc boinc    590103 Nov 24 20:58 input.tar.gz
[2025-11-24 21:03:19] -rw-r--r-- 2 boinc boinc     15847 Nov 24 20:58 start_atlas.sh
[2025-11-24 21:03:19] -rw------- 1 boinc boinc    174080 Nov 24 21:03 result.tar.gz
21:03:21 (2367236): run_atlas exited; CPU time 32.211749
21:03:21 (2367236): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN