Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:00:06 (1799812): wrapper (7.7.26015): starting
11:00:06 (1799812): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 11:00:06] Arguments: --nthreads 3
[2025-11-27 11:00:06] Threads: 3
[2025-11-27 11:00:06] Checking for CVMFS
[2025-11-27 11:00:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:00:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:00:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:00:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:00:06] 2.9.2.0 52203 13133 102316 153358 1 81 28242059 36864001 0 130560 0 4875424 99.943 633180 3677 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 11:00:06] CVMFS is ok
[2025-11-27 11:00:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:00:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:00:06] Further information can be found at the LHC@home message board.
[2025-11-27 11:00:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:00:06] Checking for apptainer binary...
[2025-11-27 11:00:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:00:06] Running /usr/bin/apptainer --version
[2025-11-27 11:00:06] apptainer version 1.4.1-1.1
[2025-11-27 11:00:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:00:06] thA371b
[2025-11-27 11:00:06] apptainer works
[2025-11-27 11:00:06] Set ATHENA_PROC_NUMBER=3
[2025-11-27 11:00:06] Set ATHENA_CORE_NUMBER=3
[2025-11-27 11:00:06] Starting ATLAS job with PandaID=6894052275
[2025-11-27 11:00:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:40:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:40:43] 2025-11-27 13:40:12,717 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 14:40:43] 2025-11-27 13:40:12,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:40:43] 2025-11-27 13:40:12,717 | INFO     | will abort loop
[2025-11-27 14:40:43] 2025-11-27 13:40:13,025 | INFO     | all data control threads have been joined
[2025-11-27 14:40:43] 2025-11-27 13:40:13,107 | INFO     | all payload control threads have been joined
[2025-11-27 14:40:43] 2025-11-27 13:40:13,144 | INFO     | all job control threads have been joined
[2025-11-27 14:40:43] 2025-11-27 13:40:13,634 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:13,634 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:13,663 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:13,663 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:13,723 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:13,769 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:40:43] 2025-11-27 13:40:14,031 | INFO     | [data] control thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:14,112 | INFO     | [payload] control thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:14,149 | INFO     | [job] control thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:14,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:40:43] 2025-11-27 13:40:14,375 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:14,506 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:14,516 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:14,943 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:15,068 | INFO     | [job] validate thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:15,775 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:18,299 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:23,186 | INFO     | job.realtimelogging is not enabled
[2025-11-27 14:40:43] 2025-11-27 13:40:24,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:40:43] 2025-11-27 13:40:27,154 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:40:43] 2025-11-27 13:40:28,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956057851712)>', '<ExcThread(monitor, started 139955569407744)>']
[2025-11-27 14:40:43] 2025-11-27 13:40:33,080 | INFO     | all workflow threads have been joined
[2025-11-27 14:40:43] 2025-11-27 13:40:33,080 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:40:43] 2025-11-27 13:40:33,080 | INFO     | traces error code: 0
[2025-11-27 14:40:43] 2025-11-27 13:40:33,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:40:43] 2025-11-27 13:40:42,888 | INFO     | PID=1803530 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:40:43] 2025-11-27 13:40:42,888 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:40:43] 2025-11-27 13:40:42,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:40:43] 2025-11-27 13:40:42,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:40:43] 2025-11-27 13:40:42,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:40:43] 2025-11-27 13:40:42,889 | INFO     | [monitor] control thread has ended
[2025-11-27 14:40:43] 2025-11-27 13:40:42,939 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:40:43] 2025-11-27 13:40:42,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:40:43] 2025-11-27 13:40:42,944 [wrapper] pilotpid: 1803530
[2025-11-27 14:40:43] 2025-11-27 13:40:42,946 [wrapper] Pilot exit status: 0
[2025-11-27 14:40:43] 2025-11-27 13:40:42,953 [wrapper] pandaids: 6894052275
[2025-11-27 14:40:43] 2025-11-27 13:40:42,969 [wrapper] cleanup supervisor_pilot 1833224 1803531
[2025-11-27 14:40:43] 2025-11-27 13:40:42,971 [wrapper] Test setup, not cleaning
[2025-11-27 14:40:43] 2025-11-27 13:40:42,973 [wrapper] apfmon messages muted
[2025-11-27 14:40:43] 2025-11-27 13:40:42,975 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:40:43] 2025-11-27 13:40:42,978 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:40:43]  *** Error codes and diagnostics ***
[2025-11-27 14:40:43]     "exeErrorCode": 0,
[2025-11-27 14:40:43]     "exeErrorDiag": "",
[2025-11-27 14:40:43]     "pilotErrorCode": 0,
[2025-11-27 14:40:43]     "pilotErrorDiag": "",
[2025-11-27 14:40:43]  *** Listing of results directory ***
[2025-11-27 14:40:43] total 619260
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc    576529 Nov 23 12:59 pilot3.tar.gz
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc      5112 Nov 23 13:07 queuedata.json
[2025-11-27 14:40:43] -rwx------ 1 boinc boinc     36292 Nov 23 13:09 runpilot2-wrapper.sh
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc       100 Nov 27 11:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:40:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 11:00 run_atlas
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc       105 Nov 27 11:00 job.xml
[2025-11-27 14:40:43] -rw-r--r-- 2 boinc boinc 294329666 Nov 27 11:00 EVNT.47523648._000005.pool.root.1
[2025-11-27 14:40:43] -rw-r--r-- 2 boinc boinc    589954 Nov 27 11:00 input.tar.gz
[2025-11-27 14:40:43] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:00 start_atlas.sh
[2025-11-27 14:40:43] drwxrwx--x 2 boinc boinc      4096 Nov 27 11:00 shared
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:00 boinc_setup_complete
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc      6441 Nov 27 11:00 init_data.xml
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:00 boinc_lockfile
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc      2625 Nov 27 11:00 pandaJob.out
[2025-11-27 14:40:43] -rw------- 1 boinc boinc    991551 Nov 27 11:00 agis_schedconf.cvmfs.json
[2025-11-27 14:40:43] drwx------ 5 boinc boinc      4096 Nov 27 11:00 pilot3
[2025-11-27 14:40:43] -rw------- 1 boinc boinc 331389009 Nov 27 14:39 HITS.47523650._000123.pool.root.1
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc       530 Nov 27 14:39 boinc_task_state.xml
[2025-11-27 14:40:43] -rw------- 1 boinc boinc      1023 Nov 27 14:40 memory_monitor_summary.json
[2025-11-27 14:40:43] -rw------- 1 boinc boinc   1516240 Nov 27 14:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:40:43] -rw------- 1 boinc boinc    386494 Nov 27 14:40 log.47523650._000123.job.log.tgz.1
[2025-11-27 14:40:43] -rw------- 1 boinc boinc      7757 Nov 27 14:40 heartbeat.json
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc      8192 Nov 27 14:40 boinc_mmap_file
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc        28 Nov 27 14:40 wrapper_checkpoint.txt
[2025-11-27 14:40:43] -rw------- 1 boinc boinc       747 Nov 27 14:40 pilotlog.txt
[2025-11-27 14:40:43] -rw------- 1 boinc boinc        95 Nov 27 14:40 pilot_heartbeat.json
[2025-11-27 14:40:43] -rw------- 1 boinc boinc   1871572 Nov 27 14:40 log.47523650._000123.job.log.1
[2025-11-27 14:40:43] -rw------- 1 boinc boinc       357 Nov 27 14:40 output.list
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc       620 Nov 27 14:40 runtime_log
[2025-11-27 14:40:43] -rw------- 1 boinc boinc   2273280 Nov 27 14:40 result.tar.gz
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc      8903 Nov 27 14:40 runtime_log.err
[2025-11-27 14:40:43] -rw------- 1 boinc boinc       662 Nov 27 14:40 SIpNDmB5Nh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnsKKDmPC9DPn.diag
[2025-11-27 14:40:43] -rw-r--r-- 1 boinc boinc      7269 Nov 27 14:40 stderr.txt
[2025-11-27 14:40:43] HITS file was successfully produced:
[2025-11-27 14:40:43] -rw------- 1 boinc boinc 331389009 Nov 27 14:39 shared/HITS.pool.root.1
[2025-11-27 14:40:43]  *** Contents of shared directory: ***
[2025-11-27 14:40:43] total 613880
[2025-11-27 14:40:43] -rw-r--r-- 2 boinc boinc 294329666 Nov 27 11:00 ATLAS.root_0
[2025-11-27 14:40:43] -rw-r--r-- 2 boinc boinc    589954 Nov 27 11:00 input.tar.gz
[2025-11-27 14:40:43] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:00 start_atlas.sh
[2025-11-27 14:40:43] -rw------- 1 boinc boinc 331389009 Nov 27 14:39 HITS.pool.root.1
[2025-11-27 14:40:43] -rw------- 1 boinc boinc   2273280 Nov 27 14:40 result.tar.gz
14:40:44 (1799812): run_atlas exited; CPU time 38771.638320
14:40:44 (1799812): called boinc_finish(0)

</stderr_txt>
]]>

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