Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:57:23 (2382507): wrapper (7.7.26015): starting
11:57:23 (2382507): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 11:57:23] Arguments: --nthreads 12
[2025-11-24 11:57:23] Threads: 12
[2025-11-24 11:57:23] Checking for CVMFS
[2025-11-24 11:57:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:57:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:57:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:57:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:57:24] 2.11.5.0 2104101 25934 201624 153257 0 774 26412410 45568001 22675 130560 0 275423800 99.776 183853736 24896 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-24 11:57:24] CVMFS is ok
[2025-11-24 11:57:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:57:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:57:24] Further information can be found at the LHC@home message board.
[2025-11-24 11:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:57:24] Checking for apptainer binary...
[2025-11-24 11:57:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:57:24] Running /usr/bin/apptainer --version
[2025-11-24 11:57:24] apptainer version 1.4.1-1.el9
[2025-11-24 11:57:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:57:25] wns0090.triumf.lcg
[2025-11-24 11:57:25] apptainer works
[2025-11-24 11:57:25] Set ATHENA_PROC_NUMBER=12
[2025-11-24 11:57:25] Set ATHENA_CORE_NUMBER=12
[2025-11-24 11:57:25] Starting ATLAS job with PandaID=6895418012
[2025-11-24 11:57:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:07:09]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:07:09] 2025-11-24 20:06:02,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | WARNING  | wrong length of table data, x=[1764014398.0, 1764014459.0, 1764014520.0, 1764014581.0], y=[1621.0, 335425.0, 855899.0, 580726.0] (must be same and length>=4)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | could have reported an average CPU frequency of 2735 MHz (4 samples)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | ..............................
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | . Timing measurements:
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . get job = 0 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . initial setup = 3 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . payload setup = 27 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . stage-in = 0 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . payload execution = 243 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | . stage-out = 2 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | . log creation = 1 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | ..............................
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895418012/pilotlog.txt
[2025-11-24 12:07:09] 2025-11-24 20:06:02,498 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 12:07:09] - Log from pilotlog.txt -
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895418012/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | INFO     | extracted standard info from prmon json
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:07:09] 2025-11-24 20:06:02,346 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 12:07:09] 2025-11-24 20:06:02,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | WARNING  | wrong length of table data, x=[1764014398.0, 1764014459.0, 1764014520.0, 1764014581.0], y=[1621.0, 335425.0, 855899.0, 580726.0] (must be same and length>=4)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | could have reported an average CPU frequency of 2735 MHz (4 samples)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | ..............................
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | . Timing measurements:
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . get job = 0 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . initial setup = 3 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . payload setup = 27 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . stage-in = 0 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . payload execution = 243 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | . stage-out = 2 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | . log creation = 1 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | ..............................
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895418012/pilotlog.txt
[2025-11-24 12:07:09] 2025-11-24 20:06:02,499 | WARNING  | 
[2025-11-24 12:07:09] [begin log extracts]
[2025-11-24 12:07:09] - Log from pilotlog.txt -
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895418012/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | INFO     | extracted standard info from prmon json
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:07:09] 2025-11-24 20:06:02,345 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:07:09] 2025-11-24 20:06:02,346 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 12:07:09] 2025-11-24 20:06:02,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | WARNING  | wrong length of table data, x=[1764014398.0, 1764014459.0, 1764014520.0, 1764014581.0], y=[1621.0, 335425.0, 855899.0, 580726.0] (must be same and length>=4)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | could have reported an average CPU frequency of 2735 MHz (4 samples)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | ..............................
[2025-11-24 12:07:09] 2025-11-24 20:06:02,358 | INFO     | . Timing measurements:
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . get job = 0 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . initial setup = 3 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . payload setup = 27 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . stage-in = 0 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,392 | INFO     | . payload execution = 243 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | . stage-out = 2 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | . log creation = 1 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | ..............................
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 12:07:09] 2025-11-24 20:06:02,393 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895418012/pilotlog.txt
[2025-11-24 12:07:09] [end log extracts]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,499 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,499 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 12:07:09] 2025-11-24 20:06:02,827 | INFO     | 
[2025-11-24 12:07:09] 2025-11-24 20:06:02,827 | INFO     | job summary report
[2025-11-24 12:07:09] 2025-11-24 20:06:02,827 | INFO     | --------------------------------------------------
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | PanDA job id: 6895418012
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | task id: 47556149
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 12:03:24,179 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | pilot state: failed 
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | transexitcode: 65
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | exeerrorcode: 65
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | exitcode: 65
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | cpuconsumptiontime: 49 s
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | nevents: 0
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | neventsw: 0
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | pid: 2393547
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | pgrp: 2393547
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | corecount: 12
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | event service: False
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | sizes: {0: 2284136, 1: 2284307, 2: 2284363, 13: 2284363, 23: 2284419, 27: 2284709, 34: 2284865, 272: 2310402, 276: 2314692, 280: 2314748, 425: 2314942}
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | --------------------------------------------------
[2025-11-24 12:07:09] 2025-11-24 20:06:02,828 | INFO     | 
[2025-11-24 12:07:09] 2025-11-24 20:06:02,829 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 12:07:09] 2025-11-24 20:06:02,877 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,879 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,879 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,879 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,879 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:07:09] 2025-11-24 20:06:02,879 | INFO     | job 6895418012 has completed (purged errors)
[2025-11-24 12:07:09] 2025-11-24 20:06:02,879 | INFO     | overall cleanup function is called
[2025-11-24 12:07:09] 2025-11-24 20:06:03,899 | INFO     | --- collectZombieJob: --- 10, [2393547]
[2025-11-24 12:07:09] 2025-11-24 20:06:03,899 | INFO     | zombie collector waiting for pid 2393547
[2025-11-24 12:07:09] 2025-11-24 20:06:03,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:07:09] 2025-11-24 20:06:03,900 | INFO     | collected zombie processes
[2025-11-24 12:07:09] 2025-11-24 20:06:03,900 | INFO     | will attempt to kill all subprocesses of pid=2393547
[2025-11-24 12:07:09] 2025-11-24 20:06:04,912 | INFO     | process IDs to be killed: [2393547] (in reverse order)
[2025-11-24 12:07:09] 2025-11-24 20:06:05,350 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:07:09] 2025-11-24 20:06:05,351 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:07:09] 2025-11-24 20:06:05,376 | INFO     | did not find any defunct processes belonging to 2393547
[2025-11-24 12:07:09] 2025-11-24 20:06:05,431 | INFO     | did not find any defunct processes belonging to 2393547
[2025-11-24 12:07:09] 2025-11-24 20:06:05,432 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:07:09] 2025-11-24 20:06:05,432 | INFO     | ready for new job
[2025-11-24 12:07:09] 2025-11-24 20:06:05,432 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:07:09] 2025-11-24 20:06:05,433 | INFO     | ***************************************
[2025-11-24 12:07:09] 2025-11-24 20:06:05,433 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:07:09] 2025-11-24 20:06:05,433 | INFO     | ***************************************
[2025-11-24 12:07:09] 2025-11-24 20:06:05,433 | INFO     | 
[2025-11-24 12:07:09] 2025-11-24 20:06:05,456 | INFO     | architecture information:
[2025-11-24 12:07:09] 2025-11-24 20:06:05,464 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:07:09] 2025-11-24 20:06:05,559 | INFO     | cat /etc/os-release:
[2025-11-24 12:07:09] NAME="CentOS Linux"
[2025-11-24 12:07:09] VERSION="7 (Core)"
[2025-11-24 12:07:09] ID="centos"
[2025-11-24 12:07:09] ID_LIKE="rhel fedora"
[2025-11-24 12:07:09] VERSION_ID="7"
[2025-11-24 12:07:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:07:09] ANSI_COLOR="0;31"
[2025-11-24 12:07:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:07:09] HOME_URL="https://www.centos.org/"
[2025-11-24 12:07:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:07:09] 
[2025-11-24 12:07:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:07:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:07:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:07:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:07:09] 
[2025-11-24 12:07:09] 2025-11-24 20:06:05,560 | INFO     | ***************************************
[2025-11-24 12:07:09] 2025-11-24 20:06:06,063 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 12:07:09] 2025-11-24 20:06:06,121 | INFO     | sufficient remaining disk space (1712935927808 B)
[2025-11-24 12:07:09] 2025-11-24 20:06:06,122 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:07:09] 2025-11-24 20:06:06,122 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:07:09] 2025-11-24 20:06:06,122 | INFO     | update_server=False
[2025-11-24 12:07:09] 2025-11-24 20:06:06,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:07:09] 2025-11-24 20:06:06,123 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:07:09] 2025-11-24 20:06:06,197 | INFO     | all job control threads have been joined
[2025-11-24 12:07:09] 2025-11-24 20:06:06,296 | INFO     | all data control threads have been joined
[2025-11-24 12:07:09] 2025-11-24 20:06:06,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:07:09] 2025-11-24 20:06:06,857 | INFO     | aborting loop
[2025-11-24 12:07:09] 2025-11-24 20:06:07,128 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,176 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,203 | INFO     | [job] control thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,302 | INFO     | [data] control thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,407 | INFO     | all payload control threads have been joined
[2025-11-24 12:07:09] 2025-11-24 20:06:07,477 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,503 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,657 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,715 | INFO     | [job] validate thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:07:09] 2025-11-24 20:06:07,866 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:07,947 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:08,130 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:08,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:07:09] 2025-11-24 20:06:08,413 | INFO     | [payload] control thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:08,697 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:08,835 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:12,328 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:07:09] 2025-11-24 20:06:35,258 | INFO     | PID=2386306 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:07:09] 2025-11-24 20:06:35,258 | INFO     | .. there are 42 such processes running
[2025-11-24 12:07:09] 2025-11-24 20:06:35,259 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:07:09] 2025-11-24 20:06:35,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:07:09] 2025-11-24 20:06:35,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:07:09] 2025-11-24 20:07:01,503 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:07:09] 2025-11-24 20:07:02,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911986968384)>', '<ExcThread(monitor, started 139911667619584)>']
[2025-11-24 12:07:09] 2025-11-24 20:07:02,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:07:09] 2025-11-24 20:07:02,422 | INFO     | [monitor] control thread has ended
[2025-11-24 12:07:09] 2025-11-24 20:07:07,319 | INFO     | all workflow threads have been joined
[2025-11-24 12:07:09] 2025-11-24 20:07:07,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:07:09] 2025-11-24 20:07:07,320 | INFO     | traces error code: 0
[2025-11-24 12:07:09] 2025-11-24 20:07:07,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:07:09] 2025-11-24 20:07:07,956 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:07:09] 2025-11-24 20:07:07,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:07:09] 2025-11-24 20:07:08,010 [wrapper] pilotpid: 2386306
[2025-11-24 12:07:09] 2025-11-24 20:07:08,044 [wrapper] Pilot exit status: 0
[2025-11-24 12:07:09] 2025-11-24 20:07:08,226 [wrapper] pandaids: 6895418012
[2025-11-24 12:07:09] 2025-11-24 20:07:08,752 [wrapper] cleanup supervisor_pilot 2386315 2386307
[2025-11-24 12:07:09] 2025-11-24 20:07:08,765 [wrapper] Test setup, not cleaning
[2025-11-24 12:07:09] 2025-11-24 20:07:08,776 [wrapper] apfmon messages muted
[2025-11-24 12:07:09] 2025-11-24 20:07:08,803 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:07:09] 2025-11-24 20:07:08,813 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:07:09]  *** Error codes and diagnostics ***
[2025-11-24 12:07:09]     "exeErrorCode": 65,
[2025-11-24 12:07:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 12:07:09]     "pilotErrorCode": 1305,
[2025-11-24 12:07:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 12:07:09]  *** Listing of results directory ***
[2025-11-24 12:07:09] total 403692
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc    576529 Nov 24 00:46 pilot3.tar.gz
[2025-11-24 12:07:09] -rwx------. 1 boinc boinc     36292 Nov 24 00:52 runpilot2-wrapper.sh
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc      5112 Nov 24 00:52 queuedata.json
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc       100 Nov 24 11:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:07:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 11:57 run_atlas
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc       105 Nov 24 11:57 job.xml
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc      6595 Nov 24 11:57 init_data.xml
[2025-11-24 12:07:09] -rw-r--r--. 2 boinc boinc 409114799 Nov 24 11:57 EVNT.47483658._001280.pool.root.1
[2025-11-24 12:07:09] -rw-r--r--. 2 boinc boinc    590104 Nov 24 11:57 input.tar.gz
[2025-11-24 12:07:09] drwxrwx--x. 2 boinc boinc      4096 Nov 24 11:57 shared
[2025-11-24 12:07:09] -rw-r--r--. 2 boinc boinc     15847 Nov 24 11:57 start_atlas.sh
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc         0 Nov 24 11:57 boinc_lockfile
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc      2786 Nov 24 11:57 pandaJob.out
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc    991801 Nov 24 11:57 agis_schedconf.cvmfs.json
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc   1516227 Nov 24 11:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:07:09] drwx------. 5 boinc boinc      4096 Nov 24 11:58 pilot3
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc       524 Nov 24 12:03 boinc_task_state.xml
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc      1009 Nov 24 12:03 memory_monitor_summary.json
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc     51343 Nov 24 12:03 log.47556149._002665.job.log.tgz.1
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc     10362 Nov 24 12:06 heartbeat.json
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc        95 Nov 24 12:06 pilot_heartbeat.json
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc      4823 Nov 24 12:07 pilotlog.txt
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc        23 Nov 24 12:07 wrapper_checkpoint.txt
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc    123006 Nov 24 12:07 log.47556149._002665.job.log.1
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc       186 Nov 24 12:07 output.list
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc      8192 Nov 24 12:07 boinc_mmap_file
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc       620 Nov 24 12:07 runtime_log
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc    194560 Nov 24 12:07 result.tar.gz
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc      8636 Nov 24 12:07 runtime_log.err
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc       648 Nov 24 12:07 1mHODm3Thh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7yIKDmPlArvn.diag
[2025-11-24 12:07:09] -rw-r--r--. 1 boinc boinc     22670 Nov 24 12:07 stderr.txt
[2025-11-24 12:07:09] No HITS result produced
[2025-11-24 12:07:09]  *** Contents of shared directory: ***
[2025-11-24 12:07:09] total 400320
[2025-11-24 12:07:09] -rw-r--r--. 2 boinc boinc 409114799 Nov 24 11:57 ATLAS.root_0
[2025-11-24 12:07:09] -rw-r--r--. 2 boinc boinc    590104 Nov 24 11:57 input.tar.gz
[2025-11-24 12:07:09] -rw-r--r--. 2 boinc boinc     15847 Nov 24 11:57 start_atlas.sh
[2025-11-24 12:07:09] -rw-------. 1 boinc boinc    194560 Nov 24 12:07 result.tar.gz
12:07:10 (2382507): run_atlas exited; CPU time 58.977639
12:07:10 (2382507): called boinc_finish(0)

</stderr_txt>
]]>

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