Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:25:59 (3583): wrapper (7.7.26015): starting
14:25:59 (3583): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:25:59] Arguments: --nthreads 8
[2025-11-24 14:25:59] Threads: 8
[2025-11-24 14:25:59] Checking for CVMFS
[2025-11-24 14:25:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:25:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:25:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:25:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:25:59] 2.11.2.0 6491 6484 79860 153257 1 253 11401348 18432000 1690 130560 0 5879679 99.992 230749 15067 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:25:59] CVMFS is ok
[2025-11-24 14:25:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:25:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:25:59] Further information can be found at the LHC@home message board.
[2025-11-24 14:25:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:25:59] Checking for apptainer binary...
[2025-11-24 14:25:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:25:59] Running /usr/bin/apptainer --version
[2025-11-24 14:25:59] apptainer version 1.3.2-1.el7
[2025-11-24 14:25:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:26:00] c-206-29.aglt2.org
[2025-11-24 14:26:00] apptainer works
[2025-11-24 14:26:00] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:26:00] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:26:00] Starting ATLAS job with PandaID=6895371772
[2025-11-24 14:26:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:39:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:39:17] 2025-11-25 15:38:14,657 | INFO     | monitor loop #5175: job 0:6895371772 is in state 'finished'
[2025-11-25 10:39:17] 2025-11-25 15:38:14,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:39:17] 2025-11-25 15:38:15,565 | INFO     | time since job start (72724s) is within the limit (172800.0s)
[2025-11-25 10:39:17] 2025-11-25 15:38:15,924 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 10:39:17] 2025-11-25 15:38:15,929 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2500.125
[2025-11-25 10:39:17] 2025-11-25 15:38:15,932 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895371772/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:39:17] 2025-11-25 15:38:15,932 | INFO     | extracted standard info from prmon json
[2025-11-25 10:39:17] 2025-11-25 15:38:15,932 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:39:17] 2025-11-25 15:38:15,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:39:17] 2025-11-25 15:38:15,949 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:39:17] 2025-11-25 15:38:15,950 | INFO     | sum of square deviations: 525174524734.84534
[2025-11-25 10:39:17] 2025-11-25 15:38:15,978 | INFO     | sum of deviations: 2422952995365.531
[2025-11-25 10:39:17] 2025-11-25 15:38:15,979 | INFO     | mean x: 1764048721.1946309
[2025-11-25 10:39:17] 2025-11-25 15:38:15,979 | INFO     | mean y: 2866998.73909396
[2025-11-25 10:39:17] 2025-11-25 15:38:15,979 | INFO     | intersect: -8135774408.414582
[2025-11-25 10:39:17] 2025-11-25 15:38:15,981 | INFO     | chi2: 4.9114029262290595
[2025-11-25 10:39:17] 2025-11-25 15:38:15,983 | INFO     | sum of square deviations: 518593667832.4233
[2025-11-25 10:39:17] 2025-11-25 15:38:16,024 | INFO     | sum of deviations: 2756111397385.9346
[2025-11-25 10:39:17] 2025-11-25 15:38:16,024 | INFO     | mean x: 1764048568.697557
[2025-11-25 10:39:17] 2025-11-25 15:38:16,025 | INFO     | mean y: 2874715.8744734623
[2025-11-25 10:39:17] 2025-11-25 15:38:16,025 | INFO     | intersect: -9372315664.006418
[2025-11-25 10:39:17] 2025-11-25 15:38:16,026 | INFO     | chi2: 2.5390222797508177
[2025-11-25 10:39:17] 2025-11-25 15:38:16,027 | INFO     | current chi2=2.5390222797508177 (change=48.30352308927215 %)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,028 | INFO     | sum of square deviations: 512068021267.4795
[2025-11-25 10:39:17] 2025-11-25 15:38:16,077 | INFO     | sum of deviations: 2871957670876.9937
[2025-11-25 10:39:17] 2025-11-25 15:38:16,077 | INFO     | mean x: 1764048416.2005076
[2025-11-25 10:39:17] 2025-11-25 15:38:16,077 | INFO     | mean y: 2877422.0084602367
[2025-11-25 10:39:17] 2025-11-25 15:38:16,078 | INFO     | intersect: -9890871397.074862
[2025-11-25 10:39:17] 2025-11-25 15:38:16,079 | INFO     | chi2: 2.1617258517480513
[2025-11-25 10:39:17] 2025-11-25 15:38:16,079 | INFO     | current chi2=2.1617258517480513 (change=14.859910092628045 %)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,080 | INFO     | right removable region: 1181
[2025-11-25 10:39:17] 2025-11-25 15:38:16,081 | INFO     | sum of square deviations: 518593235220.81696
[2025-11-25 10:39:17] 2025-11-25 15:38:16,131 | INFO     | sum of deviations: 2140989473290.5752
[2025-11-25 10:39:17] 2025-11-25 15:38:16,132 | INFO     | mean x: 1764048873.6967144
[2025-11-25 10:39:17] 2025-11-25 15:38:16,132 | INFO     | mean y: 2873523.815501264
[2025-11-25 10:39:17] 2025-11-25 15:38:16,132 | INFO     | intersect: -7279925040.547946
[2025-11-25 10:39:17] 2025-11-25 15:38:16,134 | INFO     | chi2: 3.0731095596239837
[2025-11-25 10:39:17] 2025-11-25 15:38:16,134 | INFO     | current chi2=3.0731095596239837 (change=37.429088881870754 %)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,136 | INFO     | sum of square deviations: 512067373510.46387
[2025-11-25 10:39:17] 2025-11-25 15:38:16,184 | INFO     | sum of deviations: 2049879904682.0098
[2025-11-25 10:39:17] 2025-11-25 15:38:16,184 | INFO     | mean x: 1764049026.1962774
[2025-11-25 10:39:17] 2025-11-25 15:38:16,184 | INFO     | mean y: 2875652.5473773265
[2025-11-25 10:39:17] 2025-11-25 15:38:16,185 | INFO     | intersect: -7058868244.322327
[2025-11-25 10:39:17] 2025-11-25 15:38:16,186 | INFO     | chi2: 2.993039335571123
[2025-11-25 10:39:17] 2025-11-25 15:38:16,187 | INFO     | current chi2=2.993039335571123 (change=2.605511534794026 %)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,187 | INFO     | left removable region: 20
[2025-11-25 10:39:17] 2025-11-25 15:38:16,188 | INFO     | sum of square deviations: 485256867705.68976
[2025-11-25 10:39:17] 2025-11-25 15:38:16,235 | INFO     | sum of deviations: 2371146196564.7656
[2025-11-25 10:39:17] 2025-11-25 15:38:16,236 | INFO     | mean x: 1764048995.7002585
[2025-11-25 10:39:17] 2025-11-25 15:38:16,236 | INFO     | mean y: 2889396.783807063
[2025-11-25 10:39:17] 2025-11-25 15:38:16,236 | INFO     | intersect: -8616912495.943775
[2025-11-25 10:39:17] 2025-11-25 15:38:16,238 | INFO     | chi2: 0.18388594692589044
[2025-11-25 10:39:17] 2025-11-25 15:38:16,238 | INFO     | current memory leak: 4.89 B/s (using 1161 data points, chi2=0.18)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,240 | INFO     | could have reported an average CPU frequency of 2614 MHz (43 samples)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,240 | INFO     | ..............................
[2025-11-25 10:39:17] 2025-11-25 15:38:16,240 | INFO     | . Timing measurements:
[2025-11-25 10:39:17] 2025-11-25 15:38:16,240 | INFO     | . get job = 0 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,241 | INFO     | . initial setup = 2 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,241 | INFO     | . payload setup = 5 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,241 | INFO     | . stage-in = 0 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,241 | INFO     | . payload execution = 72691 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,241 | INFO     | . stage-out = 4 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,241 | INFO     | . log creation = 0 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,242 | INFO     | ..............................
[2025-11-25 10:39:17] 2025-11-25 15:38:16,741 | INFO     | 
[2025-11-25 10:39:17] 2025-11-25 15:38:16,742 | INFO     | job summary report
[2025-11-25 10:39:17] 2025-11-25 15:38:16,742 | INFO     | --------------------------------------------------
[2025-11-25 10:39:17] 2025-11-25 15:38:16,742 | INFO     | PanDA job id: 6895371772
[2025-11-25 10:39:17] 2025-11-25 15:38:16,742 | INFO     | task id: 47556137
[2025-11-25 10:39:17] 2025-11-25 15:38:16,742 | INFO     | errors: (none)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:39:17] 2025-11-25 15:38:16,743 | INFO     | pilot state: finished 
[2025-11-25 10:39:17] 2025-11-25 15:38:16,743 | INFO     | transexitcode: 0
[2025-11-25 10:39:17] 2025-11-25 15:38:16,743 | INFO     | exeerrorcode: 0
[2025-11-25 10:39:17] 2025-11-25 15:38:16,743 | INFO     | exeerrordiag: 
[2025-11-25 10:39:17] 2025-11-25 15:38:16,743 | INFO     | exitcode: 0
[2025-11-25 10:39:17] 2025-11-25 15:38:16,744 | INFO     | exitmsg: OK
[2025-11-25 10:39:17] 2025-11-25 15:38:16,744 | INFO     | cpuconsumptiontime: 564177 s
[2025-11-25 10:39:17] 2025-11-25 15:38:16,744 | INFO     | nevents: 1000
[2025-11-25 10:39:17] 2025-11-25 15:38:16,744 | INFO     | neventsw: 0
[2025-11-25 10:39:17] 2025-11-25 15:38:16,744 | INFO     | pid: 13821
[2025-11-25 10:39:17] 2025-11-25 15:38:16,744 | INFO     | pgrp: 13821
[2025-11-25 10:39:17] 2025-11-25 15:38:16,745 | INFO     | corecount: 8
[2025-11-25 10:39:17] 2025-11-25 15:38:16,745 | INFO     | event service: False
[2025-11-25 10:39:17] 2025-11-25 15:38:16,745 | INFO     | sizes: {0: 2284309, 3: 2284571, 11: 2284599, 72700: 2342906, 72701: 2342905, 72705: 2351960, 72706: 2352144, 72710: 2352390}
[2025-11-25 10:39:17] 2025-11-25 15:38:16,745 | INFO     | --------------------------------------------------
[2025-11-25 10:39:17] 2025-11-25 15:38:16,745 | INFO     | 
[2025-11-25 10:39:17] 2025-11-25 15:38:16,746 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 10:39:17] 2025-11-25 15:38:16,763 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,764 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,764 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,767 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:39:17] 2025-11-25 15:38:16,767 | INFO     | job 6895371772 has completed (purged errors)
[2025-11-25 10:39:17] 2025-11-25 15:38:16,767 | INFO     | overall cleanup function is called
[2025-11-25 10:39:17] 2025-11-25 15:38:17,784 | INFO     | --- collectZombieJob: --- 10, [13821]
[2025-11-25 10:39:17] 2025-11-25 15:38:17,784 | INFO     | zombie collector waiting for pid 13821
[2025-11-25 10:39:17] 2025-11-25 15:38:17,784 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:39:17] 2025-11-25 15:38:17,785 | INFO     | collected zombie processes
[2025-11-25 10:39:17] 2025-11-25 15:38:17,785 | INFO     | will attempt to kill all subprocesses of pid=13821
[2025-11-25 10:39:17] 2025-11-25 15:38:17,961 | INFO     | process IDs to be killed: [13821] (in reverse order)
[2025-11-25 10:39:17] 2025-11-25 15:38:18,024 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:39:17] 2025-11-25 15:38:18,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:39:17] 2025-11-25 15:38:18,029 | INFO     | did not find any defunct processes belonging to 13821
[2025-11-25 10:39:17] 2025-11-25 15:38:18,034 | INFO     | did not find any defunct processes belonging to 13821
[2025-11-25 10:39:17] 2025-11-25 15:38:18,036 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:39:17] 2025-11-25 15:38:18,036 | INFO     | ready for new job
[2025-11-25 10:39:17] 2025-11-25 15:38:18,036 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:39:17] 2025-11-25 15:38:18,041 | INFO     | ***************************************
[2025-11-25 10:39:17] 2025-11-25 15:38:18,042 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:39:17] 2025-11-25 15:38:18,042 | INFO     | ***************************************
[2025-11-25 10:39:17] 2025-11-25 15:38:18,042 | INFO     | 
[2025-11-25 10:39:17] 2025-11-25 15:38:18,043 | INFO     | architecture information:
[2025-11-25 10:39:17] 2025-11-25 15:38:18,044 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:39:17] 2025-11-25 15:38:18,059 | INFO     | cat /etc/os-release:
[2025-11-25 10:39:17] NAME="CentOS Linux"
[2025-11-25 10:39:17] VERSION="7 (Core)"
[2025-11-25 10:39:17] ID="centos"
[2025-11-25 10:39:17] ID_LIKE="rhel fedora"
[2025-11-25 10:39:17] VERSION_ID="7"
[2025-11-25 10:39:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:39:17] ANSI_COLOR="0;31"
[2025-11-25 10:39:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:39:17] HOME_URL="https://www.centos.org/"
[2025-11-25 10:39:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:39:17] 
[2025-11-25 10:39:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:39:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:39:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:39:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:39:17] 
[2025-11-25 10:39:17] 2025-11-25 15:38:18,059 | INFO     | ***************************************
[2025-11-25 10:39:17] 2025-11-25 15:38:18,562 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 10:39:17] 2025-11-25 15:38:18,582 | INFO     | sufficient remaining disk space (25825378304 B)
[2025-11-25 10:39:17] 2025-11-25 15:38:18,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:39:17] 2025-11-25 15:38:18,583 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:39:17] 2025-11-25 15:38:18,583 | INFO     | update_server=False
[2025-11-25 10:39:17] 2025-11-25 15:38:18,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:39:17] 2025-11-25 15:38:18,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:39:17] 2025-11-25 15:38:18,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:39:17] 2025-11-25 15:38:18,584 | INFO     | aborting loop
[2025-11-25 10:39:17] 2025-11-25 15:38:18,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:39:17] 2025-11-25 15:38:19,519 | INFO     | all job control threads have been joined
[2025-11-25 10:39:17] 2025-11-25 15:38:19,520 | INFO     | all data control threads have been joined
[2025-11-25 10:39:17] 2025-11-25 15:38:19,532 | INFO     | all payload control threads have been joined
[2025-11-25 10:39:17] 2025-11-25 15:38:19,588 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:19,589 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:19,758 | INFO     | [job] validate thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,113 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,278 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,345 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,422 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,525 | INFO     | [job] control thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,526 | INFO     | [data] control thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,537 | INFO     | [payload] control thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,786 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,918 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:20,936 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:21,044 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:21,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:39:17] 2025-11-25 15:38:22,417 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:22,590 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:39:17] 2025-11-25 15:38:48,820 | INFO     | PID=7426 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 10:39:17] 2025-11-25 15:38:48,820 | INFO     | .. there are 3 such processes running
[2025-11-25 10:39:17] 2025-11-25 15:38:48,820 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:39:17] 2025-11-25 15:38:48,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:39:17] 2025-11-25 15:38:48,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:39:17] 2025-11-25 15:39:11,821 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:39:17] 2025-11-25 15:39:12,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697863886656)>', '<ExcThread(monitor, started 140697290143488)>']
[2025-11-25 10:39:17] 2025-11-25 15:39:12,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:39:17] 2025-11-25 15:39:12,941 | INFO     | [monitor] control thread has ended
[2025-11-25 10:39:17] 2025-11-25 15:39:17,103 | INFO     | all workflow threads have been joined
[2025-11-25 10:39:17] 2025-11-25 15:39:17,104 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:39:17] 2025-11-25 15:39:17,104 | INFO     | traces error code: 0
[2025-11-25 10:39:17] 2025-11-25 15:39:17,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:39:17] 2025-11-25 15:39:17,235 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:39:17] 2025-11-25 15:39:17,238 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:39:17] 2025-11-25 15:39:17,240 [wrapper] pilotpid: 7426
[2025-11-25 10:39:17] 2025-11-25 15:39:17,243 [wrapper] Pilot exit status: 0
[2025-11-25 10:39:17] 2025-11-25 15:39:17,251 [wrapper] pandaids: 6895371772
[2025-11-25 10:39:17] 2025-11-25 15:39:17,283 [wrapper] cleanup supervisor_pilot 18151 7427
[2025-11-25 10:39:17] 2025-11-25 15:39:17,285 [wrapper] Test setup, not cleaning
[2025-11-25 10:39:17] 2025-11-25 15:39:17,287 [wrapper] apfmon messages muted
[2025-11-25 10:39:17] 2025-11-25 15:39:17,289 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:39:17] 2025-11-25 15:39:17,292 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:39:17]  *** Error codes and diagnostics ***
[2025-11-25 10:39:17]     "exeErrorCode": 0,
[2025-11-25 10:39:17]     "exeErrorDiag": "",
[2025-11-25 10:39:17]     "pilotErrorCode": 0,
[2025-11-25 10:39:17]     "pilotErrorDiag": "",
[2025-11-25 10:39:17]  *** Listing of results directory ***
[2025-11-25 10:39:17] total 1330072
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 16:23 pilot3.tar.gz
[2025-11-25 10:39:17] -rwx------ 1 boincer umatlas     36292 Nov 23 16:43 runpilot2-wrapper.sh
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 16:43 queuedata.json
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas       100 Nov 24 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:39:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 14:25 run_atlas
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas       105 Nov 24 14:25 job.xml
[2025-11-25 10:39:17] -rw-r--r-- 2 boincer umatlas 409539514 Nov 24 14:25 EVNT.47483658._000903.pool.root.1
[2025-11-25 10:39:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:25 start_atlas.sh
[2025-11-25 10:39:17] drwxrwx--x 2 boincer umatlas      4096 Nov 24 14:25 shared
[2025-11-25 10:39:17] -rw-r--r-- 2 boincer umatlas    590100 Nov 24 14:25 input.tar.gz
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas         0 Nov 24 14:25 boinc_lockfile
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 14:26 pandaJob.out
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas        57 Nov 24 14:26 setup.sh.local
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas    991801 Nov 24 14:26 agis_schedconf.cvmfs.json
[2025-11-25 10:39:17] drwx------ 5 boincer umatlas      4096 Nov 24 14:26 pilot3
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas       533 Nov 25 10:26 boinc_task_state.xml
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 10:36 init_data.xml
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas 923762989 Nov 25 10:37 HITS.47556137._008896.pool.root.1
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas        95 Nov 25 10:37 pilot_heartbeat.json
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas      1078 Nov 25 10:38 memory_monitor_summary.json
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas   1516240 Nov 25 10:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas   2341097 Nov 25 10:38 log.47556137._008896.job.log.tgz.1
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas      8677 Nov 25 10:38 heartbeat.json
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas        29 Nov 25 10:39 wrapper_checkpoint.txt
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 10:39 boinc_mmap_file
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas      4820 Nov 25 10:39 pilotlog.txt
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas  10040774 Nov 25 10:39 log.47556137._008896.job.log.1
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas       353 Nov 25 10:39 output.list
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas       620 Nov 25 10:39 runtime_log
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas  12400640 Nov 25 10:39 result.tar.gz
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 10:39 runtime_log.err
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas       668 Nov 25 10:39 HgQLDmo2Wh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnlIKDm1X8UBn.diag
[2025-11-25 10:39:17] -rw-r--r-- 1 boincer umatlas     21301 Nov 25 10:39 stderr.txt
[2025-11-25 10:39:17] HITS file was successfully produced:
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas 923762989 Nov 25 10:37 shared/HITS.pool.root.1
[2025-11-25 10:39:17]  *** Contents of shared directory: ***
[2025-11-25 10:39:17] total 1314776
[2025-11-25 10:39:17] -rw-r--r-- 2 boincer umatlas 409539514 Nov 24 14:25 ATLAS.root_0
[2025-11-25 10:39:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:25 start_atlas.sh
[2025-11-25 10:39:17] -rw-r--r-- 2 boincer umatlas    590100 Nov 24 14:25 input.tar.gz
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas 923762989 Nov 25 10:37 HITS.pool.root.1
[2025-11-25 10:39:17] -rw------- 1 boincer umatlas  12400640 Nov 25 10:39 result.tar.gz
10:39:18 (3583): run_atlas exited; CPU time 563184.145111
10:39:18 (3583): called boinc_finish(0)

</stderr_txt>
]]>

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