Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:23:02 (12670): wrapper (7.7.26015): starting
23:23:02 (12670): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:23:02] Arguments: --nthreads 8
[2025-11-26 23:23:02] Threads: 8
[2025-11-26 23:23:02] Checking for CVMFS
[2025-11-26 23:23:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:23:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:23:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:23:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:23:02] 2.11.2.0 20636 285984 133792 153337 0 94 17489767 25165825 94 130560 11 124943100 99.885 73863965 2630 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:23:02] CVMFS is ok
[2025-11-26 23:23:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:23:02] Checking for apptainer binary...
[2025-11-26 23:23:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:23:02] Running /usr/bin/apptainer --version
[2025-11-26 23:23:02] apptainer version 1.3.2-1.el7
[2025-11-26 23:23:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:23:04] cg-vwn312.simple-grid.lan
[2025-11-26 23:23:04] apptainer works
[2025-11-26 23:23:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:23:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:23:04] Starting ATLAS job with PandaID=6895372802
[2025-11-26 23:23:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:23:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:23:50] 2025-11-27 20:22:28,674 | INFO     | time since job start (79147s) is within the limit (172800.0s)
[2025-11-27 21:23:50] 2025-11-27 20:22:28,724 | INFO     | monitor loop #5309: job 0:6895372802 is in state 'finished'
[2025-11-27 21:23:50] 2025-11-27 20:22:28,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:50] 2025-11-27 20:22:29,820 | INFO     | PID=16408 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:23:50] 2025-11-27 20:22:29,820 | INFO     | .. there are 2 such processes running
[2025-11-27 21:23:50] 2025-11-27 20:22:30,825 | INFO     | time since job start (79149s) is within the limit (172800.0s)
[2025-11-27 21:23:50] 2025-11-27 20:22:31,246 | INFO     | monitor loop #5310: job 0:6895372802 is in state 'finished'
[2025-11-27 21:23:50] 2025-11-27 20:22:31,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:50] 2025-11-27 20:22:32,839 | INFO     | time since job start (79151s) is within the limit (172800.0s)
[2025-11-27 21:23:50] 2025-11-27 20:22:33,751 | INFO     | monitor loop #5311: job 0:6895372802 is in state 'finished'
[2025-11-27 21:23:50] 2025-11-27 20:22:33,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:50] 2025-11-27 20:22:34,846 | INFO     | time since job start (79153s) is within the limit (172800.0s)
[2025-11-27 21:23:50] 2025-11-27 20:22:36,256 | INFO     | monitor loop #5312: job 0:6895372802 is in state 'finished'
[2025-11-27 21:23:50] 2025-11-27 20:22:36,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:50] 2025-11-27 20:22:36,853 | INFO     | time since job start (79155s) is within the limit (172800.0s)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,280 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:23:50] 2025-11-27 20:22:38,281 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 21:23:50] 2025-11-27 20:22:38,283 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895372802/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,284 | INFO     | extracted standard info from prmon json
[2025-11-27 21:23:50] 2025-11-27 20:22:38,284 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:23:50] 2025-11-27 20:22:38,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:23:50] 2025-11-27 20:22:38,310 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:23:50] 2025-11-27 20:22:38,313 | INFO     | sum of square deviations: 674981804582.071
[2025-11-27 21:23:50] 2025-11-27 20:22:38,360 | INFO     | sum of deviations: 1109626546641.269
[2025-11-27 21:23:50] 2025-11-27 20:22:38,360 | INFO     | mean x: 1764235334.5385802
[2025-11-27 21:23:50] 2025-11-27 20:22:38,360 | INFO     | mean y: 2840029.2546296297
[2025-11-27 21:23:50] 2025-11-27 20:22:38,361 | INFO     | intersect: -2897449057.7062607
[2025-11-27 21:23:50] 2025-11-27 20:22:38,362 | INFO     | chi2: 21.650915369025743
[2025-11-27 21:23:50] 2025-11-27 20:22:38,364 | INFO     | sum of square deviations: 667200004076.6705
[2025-11-27 21:23:50] 2025-11-27 20:22:38,428 | INFO     | sum of deviations: 1542629827977.6785
[2025-11-27 21:23:50] 2025-11-27 20:22:38,429 | INFO     | mean x: 1764235182.0426025
[2025-11-27 21:23:50] 2025-11-27 20:22:38,429 | INFO     | mean y: 2848513.3694810225
[2025-11-27 21:23:50] 2025-11-27 20:22:38,429 | INFO     | intersect: -4076230921.219076
[2025-11-27 21:23:50] 2025-11-27 20:22:38,431 | INFO     | chi2: 18.219224221021324
[2025-11-27 21:23:50] 2025-11-27 20:22:38,431 | INFO     | current chi2=18.219224221021324 (change=15.850097280015552 %)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,431 | INFO     | right removable region: 1290
[2025-11-27 21:23:50] 2025-11-27 20:22:38,433 | INFO     | sum of square deviations: 667199183016.6705
[2025-11-27 21:23:50] 2025-11-27 20:22:38,478 | INFO     | sum of deviations: 716003089429.7019
[2025-11-27 21:23:50] 2025-11-27 20:22:38,478 | INFO     | mean x: 1764235487.0426025
[2025-11-27 21:23:50] 2025-11-27 20:22:38,478 | INFO     | mean y: 2847738.5871417504
[2025-11-27 21:23:50] 2025-11-27 20:22:38,478 | INFO     | intersect: -1890437042.5671186
[2025-11-27 21:23:50] 2025-11-27 20:22:38,480 | INFO     | chi2: 19.22670064626562
[2025-11-27 21:23:50] 2025-11-27 20:22:38,480 | INFO     | current chi2=19.22670064626562 (change=11.196823235604421 %)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,480 | INFO     | left removable region: 10
[2025-11-27 21:23:50] 2025-11-27 20:22:38,482 | INFO     | sum of square deviations: 650289754380.9962
[2025-11-27 21:23:50] 2025-11-27 20:22:38,539 | INFO     | sum of deviations: 1144697854119.1143
[2025-11-27 21:23:50] 2025-11-27 20:22:38,539 | INFO     | mean x: 1764235456.5484376
[2025-11-27 21:23:50] 2025-11-27 20:22:38,539 | INFO     | mean y: 2860206.2078125
[2025-11-27 21:23:50] 2025-11-27 20:22:38,540 | INFO     | intersect: -3102703932.9569025
[2025-11-27 21:23:50] 2025-11-27 20:22:38,541 | INFO     | chi2: 14.858901465721534
[2025-11-27 21:23:50] 2025-11-27 20:22:38,541 | INFO     | current memory leak: 1.76 B/s (using 1280 data points, chi2=14.86)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | ..............................
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . Timing measurements:
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . get job = 0 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . initial setup = 2 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . payload setup = 9 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . stage-in = 0 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . payload execution = 79010 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . stage-out = 5 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,543 | INFO     | . log creation = 2 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,544 | INFO     | ..............................
[2025-11-27 21:23:50] 2025-11-27 20:22:38,690 | INFO     | 
[2025-11-27 21:23:50] 2025-11-27 20:22:38,690 | INFO     | job summary report
[2025-11-27 21:23:50] 2025-11-27 20:22:38,690 | INFO     | --------------------------------------------------
[2025-11-27 21:23:50] 2025-11-27 20:22:38,690 | INFO     | PanDA job id: 6895372802
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | task id: 47556137
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | errors: (none)
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | pilot state: finished 
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | transexitcode: 0
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | exeerrorcode: 0
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | exeerrordiag: 
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | exitcode: 0
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | exitmsg: OK
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | cpuconsumptiontime: 316575 s
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | nevents: 1000
[2025-11-27 21:23:50] 2025-11-27 20:22:38,691 | INFO     | neventsw: 0
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | pid: 22850
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | pgrp: 22850
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | corecount: 8
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | event service: False
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | sizes: {0: 2284143, 1: 2284342, 6: 2284604, 11: 2284632, 79020: 2342096, 79026: 2351274, 79140: 2351464}
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | --------------------------------------------------
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | 
[2025-11-27 21:23:50] 2025-11-27 20:22:38,692 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-27 21:23:50] 2025-11-27 20:22:38,868 | INFO     | time since job start (79157s) is within the limit (172800.0s)
[2025-11-27 21:23:50] 2025-11-27 20:22:39,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:23:50] 2025-11-27 20:22:39,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:23:50] 2025-11-27 20:22:39,146 | INFO     | job 6895372802 has completed (purged errors)
[2025-11-27 21:23:50] 2025-11-27 20:22:39,146 | INFO     | overall cleanup function is called
[2025-11-27 21:23:50] 2025-11-27 20:22:40,163 | INFO     | --- collectZombieJob: --- 10, [22850]
[2025-11-27 21:23:50] 2025-11-27 20:22:40,163 | INFO     | zombie collector waiting for pid 22850
[2025-11-27 21:23:50] 2025-11-27 20:22:40,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:23:50] 2025-11-27 20:22:40,163 | INFO     | collected zombie processes
[2025-11-27 21:23:50] 2025-11-27 20:22:40,164 | INFO     | will attempt to kill all subprocesses of pid=22850
[2025-11-27 21:23:50] 2025-11-27 20:22:40,262 | INFO     | process IDs to be killed: [22850] (in reverse order)
[2025-11-27 21:23:50] 2025-11-27 20:22:41,205 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:23:50] 2025-11-27 20:22:41,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:23:50] 2025-11-27 20:22:41,208 | INFO     | did not find any defunct processes belonging to 22850
[2025-11-27 21:23:50] 2025-11-27 20:22:41,209 | INFO     | did not find any defunct processes belonging to 22850
[2025-11-27 21:23:50] 2025-11-27 20:22:41,271 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:23:50] 2025-11-27 20:22:41,271 | INFO     | ready for new job
[2025-11-27 21:23:50] 2025-11-27 20:22:41,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:23:50] 2025-11-27 20:22:41,284 | INFO     | ***************************************
[2025-11-27 21:23:50] 2025-11-27 20:22:41,285 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:23:50] 2025-11-27 20:22:41,285 | INFO     | ***************************************
[2025-11-27 21:23:50] 2025-11-27 20:22:41,285 | INFO     | 
[2025-11-27 21:23:50] 2025-11-27 20:22:41,285 | INFO     | pilot is running in a VM
[2025-11-27 21:23:50] 2025-11-27 20:22:41,285 | INFO     | architecture information:
[2025-11-27 21:23:50] 2025-11-27 20:22:41,295 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:23:50] 2025-11-27 20:22:41,501 | INFO     | cat /etc/os-release:
[2025-11-27 21:23:50] NAME="CentOS Linux"
[2025-11-27 21:23:50] VERSION="7 (Core)"
[2025-11-27 21:23:50] ID="centos"
[2025-11-27 21:23:50] ID_LIKE="rhel fedora"
[2025-11-27 21:23:50] VERSION_ID="7"
[2025-11-27 21:23:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:23:50] ANSI_COLOR="0;31"
[2025-11-27 21:23:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:23:50] HOME_URL="https://www.centos.org/"
[2025-11-27 21:23:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:23:50] 
[2025-11-27 21:23:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:23:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:23:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:23:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:23:50] 
[2025-11-27 21:23:50] 2025-11-27 20:22:41,501 | INFO     | ***************************************
[2025-11-27 21:23:50] 2025-11-27 20:22:42,005 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-27 21:23:50] 2025-11-27 20:22:42,308 | INFO     | sufficient remaining disk space (492558090240 B)
[2025-11-27 21:23:50] 2025-11-27 20:22:42,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:23:50] 2025-11-27 20:22:42,308 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:23:50] 2025-11-27 20:22:42,308 | INFO     | update_server=False
[2025-11-27 21:23:50] 2025-11-27 20:22:42,309 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:23:50] 2025-11-27 20:22:42,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:23:50] 2025-11-27 20:22:42,309 | INFO     | aborting loop
[2025-11-27 21:23:50] 2025-11-27 20:22:43,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:23:50] 2025-11-27 20:22:43,245 | INFO     | all data control threads have been joined
[2025-11-27 21:23:50] 2025-11-27 20:22:43,258 | INFO     | all payload control threads have been joined
[2025-11-27 21:23:50] 2025-11-27 20:22:43,314 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:43,315 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:43,519 | INFO     | all job control threads have been joined
[2025-11-27 21:23:50] 2025-11-27 20:22:43,534 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:43,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:43,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:23:50] 2025-11-27 20:22:43,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:23:50] 2025-11-27 20:22:43,924 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:43,928 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:43,969 | INFO     | [job] validate thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,234 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,239 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,251 | INFO     | [data] control thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,263 | INFO     | [payload] control thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,492 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,525 | INFO     | [job] control thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:44,710 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:45,197 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:22:47,786 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:23:50] 2025-11-27 20:23:12,012 | INFO     | PID=16408 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:23:50] 2025-11-27 20:23:12,012 | INFO     | .. there are 2 such processes running
[2025-11-27 21:23:50] 2025-11-27 20:23:12,012 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:23:50] 2025-11-27 20:23:12,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:23:50] 2025-11-27 20:23:12,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:23:50] 2025-11-27 20:23:39,242 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:23:50] 2025-11-27 20:23:40,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085447825216)>', '<ExcThread(monitor, started 140084611360512)>']
[2025-11-27 21:23:50] 2025-11-27 20:23:41,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:23:50] 2025-11-27 20:23:41,187 | INFO     | [monitor] control thread has ended
[2025-11-27 21:23:50] 2025-11-27 20:23:45,384 | INFO     | all workflow threads have been joined
[2025-11-27 21:23:50] 2025-11-27 20:23:45,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:23:50] 2025-11-27 20:23:45,384 | INFO     | traces error code: 0
[2025-11-27 21:23:50] 2025-11-27 20:23:45,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:23:50] 2025-11-27 20:23:45,780 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:23:50] 2025-11-27 20:23:45,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:23:50] 2025-11-27 20:23:45,939 [wrapper] pilotpid: 16408
[2025-11-27 21:23:50] 2025-11-27 20:23:46,030 [wrapper] Pilot exit status: 0
[2025-11-27 21:23:50] 2025-11-27 20:23:46,503 [wrapper] pandaids: 6895372802
[2025-11-27 21:23:50] 2025-11-27 20:23:47,626 [wrapper] cleanup supervisor_pilot  2776 16409
[2025-11-27 21:23:50] 2025-11-27 20:23:47,696 [wrapper] Test setup, not cleaning
[2025-11-27 21:23:50] 2025-11-27 20:23:47,778 [wrapper] apfmon messages muted
[2025-11-27 21:23:50] 2025-11-27 20:23:47,847 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:23:50] 2025-11-27 20:23:47,886 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:23:50]  *** Error codes and diagnostics ***
[2025-11-27 21:23:50]     "exeErrorCode": 0,
[2025-11-27 21:23:50]     "exeErrorDiag": "",
[2025-11-27 21:23:50]     "pilotErrorCode": 0,
[2025-11-27 21:23:50]     "pilotErrorDiag": "",
[2025-11-27 21:23:50]  *** Listing of results directory ***
[2025-11-27 21:23:50] total 1342688
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc    576529 Nov 23 23:10 pilot3.tar.gz
[2025-11-27 21:23:50] -rwx------. 1 boinc boinc     36292 Nov 23 23:16 runpilot2-wrapper.sh
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc      5112 Nov 23 23:16 queuedata.json
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:23:50] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:23 run_atlas
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:23 job.xml
[2025-11-27 21:23:50] -rw-r--r--. 2 boinc boinc 410941460 Nov 26 23:23 EVNT.47483658._000915.pool.root.1
[2025-11-27 21:23:50] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:23 start_atlas.sh
[2025-11-27 21:23:50] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:23 shared
[2025-11-27 21:23:50] -rw-r--r--. 2 boinc boinc    590102 Nov 26 23:23 input.tar.gz
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc      6390 Nov 26 23:23 init_data.xml
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:23 boinc_lockfile
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc      2785 Nov 26 23:23 pandaJob.out
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc    991546 Nov 26 23:23 agis_schedconf.cvmfs.json
[2025-11-27 21:23:50] drwx------. 5 boinc boinc      4096 Nov 26 23:23 pilot3
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc       533 Nov 27 20:46 boinc_task_state.xml
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc 934097513 Nov 27 21:19 HITS.47556137._009017.pool.root.1
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc      1034 Nov 27 21:20 memory_monitor_summary.json
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc   1516240 Nov 27 21:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc   2397100 Nov 27 21:20 log.47556137._009017.job.log.tgz.1
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc        95 Nov 27 21:22 pilot_heartbeat.json
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc      7949 Nov 27 21:22 heartbeat.json
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc      4884 Nov 27 21:23 pilotlog.txt
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc  10591642 Nov 27 21:23 log.47556137._009017.job.log.1
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc      8192 Nov 27 21:23 boinc_mmap_file
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc       353 Nov 27 21:23 output.list
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc       620 Nov 27 21:23 runtime_log
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc  13004800 Nov 27 21:23 result.tar.gz
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc        29 Nov 27 21:23 wrapper_checkpoint.txt
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc      8817 Nov 27 21:23 runtime_log.err
[2025-11-27 21:23:50] -rw-------. 1 boinc boinc       662 Nov 27 21:23 i0WLDm7YXh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmDLKDm2S5fXm.diag
[2025-11-27 21:23:50] -rw-r--r--. 1 boinc boinc     21444 Nov 27 21:23 stderr.txt
[2025-11-27 21:23:51] HITS file was successfully produced:
[2025-11-27 21:23:51] -rw-------. 1 boinc boinc 934097513 Nov 27 21:19 shared/HITS.pool.root.1
[2025-11-27 21:23:51]  *** Contents of shared directory: ***
[2025-11-27 21:23:51] total 1326816
[2025-11-27 21:23:51] -rw-r--r--. 2 boinc boinc 410941460 Nov 26 23:23 ATLAS.root_0
[2025-11-27 21:23:51] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:23 start_atlas.sh
[2025-11-27 21:23:51] -rw-r--r--. 2 boinc boinc    590102 Nov 26 23:23 input.tar.gz
[2025-11-27 21:23:51] -rw-------. 1 boinc boinc 934097513 Nov 27 21:19 HITS.pool.root.1
[2025-11-27 21:23:51] -rw-------. 1 boinc boinc  13004800 Nov 27 21:23 result.tar.gz
21:23:52 (12670): run_atlas exited; CPU time 316800.924419
21:23:52 (12670): called boinc_finish(0)

</stderr_txt>
]]>

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