Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:48:19 (27088): wrapper (7.7.26015): starting
05:48:19 (27088): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:48:19] Arguments: --nthreads 8
[2025-11-27 05:48:19] Threads: 8
[2025-11-27 05:48:19] Checking for CVMFS
[2025-11-27 05:48:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:48:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:48:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:48:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:48:21] 2.11.2.0 19320 79744 86728 153347 2 85 13499203 25165825 1288 130560 11 26129440 99.887 15962837 1566 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 05:48:21] CVMFS is ok
[2025-11-27 05:48:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:48:21] Checking for apptainer binary...
[2025-11-27 05:48:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:48:21] Running /usr/bin/apptainer --version
[2025-11-27 05:48:21] apptainer version 1.3.2-1.el7
[2025-11-27 05:48:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:48:32] cg-vwn360.simple-grid.lan
[2025-11-27 05:48:32] apptainer works
[2025-11-27 05:48:32] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:48:32] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:48:33] Starting ATLAS job with PandaID=6895358869
[2025-11-27 05:48:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:13:48]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:13:48] 2025-11-28 04:12:38,270 | INFO     | monitor loop #5654: job 0:6895358869 is in state 'finished'
[2025-11-28 05:13:48] 2025-11-28 04:12:38,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:13:48] 2025-11-28 04:12:38,972 | INFO     | time since job start (84027s) is within the limit (172800.0s)
[2025-11-28 05:13:48] 2025-11-28 04:12:40,775 | INFO     | monitor loop #5655: job 0:6895358869 is in state 'finished'
[2025-11-28 05:13:48] 2025-11-28 04:12:40,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:13:48] 2025-11-28 04:12:40,978 | INFO     | time since job start (84029s) is within the limit (172800.0s)
[2025-11-28 05:13:48] 2025-11-28 04:12:42,999 | INFO     | time since job start (84031s) is within the limit (172800.0s)
[2025-11-28 05:13:48] 2025-11-28 04:12:43,287 | INFO     | monitor loop #5656: job 0:6895358869 is in state 'finished'
[2025-11-28 05:13:48] 2025-11-28 04:12:43,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:13:48] 2025-11-28 04:12:45,006 | INFO     | time since job start (84034s) is within the limit (172800.0s)
[2025-11-28 05:13:48] 2025-11-28 04:12:45,801 | INFO     | monitor loop #5657: job 0:6895358869 is in state 'finished'
[2025-11-28 05:13:48] 2025-11-28 04:12:45,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:13:48] 2025-11-28 04:12:47,013 | INFO     | time since job start (84036s) is within the limit (172800.0s)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,312 | INFO     | monitor loop #5658: job 0:6895358869 is in state 'finished'
[2025-11-28 05:13:48] 2025-11-28 04:12:48,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,421 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 05:13:48] 2025-11-28 04:12:48,423 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 05:13:48] 2025-11-28 04:12:48,426 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895358869/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,427 | INFO     | extracted standard info from prmon json
[2025-11-28 05:13:48] 2025-11-28 04:12:48,427 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:13:48] 2025-11-28 04:12:48,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:13:48] 2025-11-28 04:12:48,453 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:13:48] 2025-11-28 04:12:48,455 | INFO     | sum of square deviations: 793845183135.9465
[2025-11-28 05:13:48] 2025-11-28 04:12:48,521 | INFO     | sum of deviations: 3465248016237.2646
[2025-11-28 05:13:48] 2025-11-28 04:12:48,521 | INFO     | mean x: 1764261334.5665205
[2025-11-28 05:13:48] 2025-11-28 04:12:48,521 | INFO     | mean y: 2841383.1454678364
[2025-11-28 05:13:48] 2025-11-28 04:12:48,521 | INFO     | intersect: -7698412236.080417
[2025-11-28 05:13:48] 2025-11-28 04:12:48,523 | INFO     | chi2: 20.21651587780353
[2025-11-28 05:13:48] 2025-11-28 04:12:48,525 | INFO     | sum of square deviations: 785172944585.2373
[2025-11-28 05:13:48] 2025-11-28 04:12:48,581 | INFO     | sum of deviations: 3919117609733.634
[2025-11-28 05:13:48] 2025-11-28 04:12:48,581 | INFO     | mean x: 1764261182.070433
[2025-11-28 05:13:48] 2025-11-28 04:12:48,581 | INFO     | mean y: 2849363.5766691123
[2025-11-28 05:13:48] 2025-11-28 04:12:48,581 | INFO     | intersect: -8803295976.128292
[2025-11-28 05:13:48] 2025-11-28 04:12:48,583 | INFO     | chi2: 17.02112818653634
[2025-11-28 05:13:48] 2025-11-28 04:12:48,583 | INFO     | current chi2=17.02112818653634 (change=15.805827822070592 %)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,583 | INFO     | right removable region: 1362
[2025-11-28 05:13:48] 2025-11-28 04:12:48,585 | INFO     | sum of square deviations: 785172054595.2369
[2025-11-28 05:13:48] 2025-11-28 04:12:48,647 | INFO     | sum of deviations: 2895776940707.798
[2025-11-28 05:13:48] 2025-11-28 04:12:48,648 | INFO     | mean x: 1764261487.070433
[2025-11-28 05:13:48] 2025-11-28 04:12:48,648 | INFO     | mean y: 2851395.533382245
[2025-11-28 05:13:48] 2025-11-28 04:12:48,648 | INFO     | intersect: -6503885187.53451
[2025-11-28 05:13:48] 2025-11-28 04:12:48,650 | INFO     | chi2: 15.562226644085042
[2025-11-28 05:13:48] 2025-11-28 04:12:48,650 | INFO     | current chi2=15.562226644085042 (change=23.02221244180164 %)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,650 | INFO     | left removable region: 10
[2025-11-28 05:13:48] 2025-11-28 04:12:48,652 | INFO     | sum of square deviations: 766315068157.5326
[2025-11-28 05:13:48] 2025-11-28 04:12:48,717 | INFO     | sum of deviations: 2965444296455.4263
[2025-11-28 05:13:48] 2025-11-28 04:12:48,718 | INFO     | mean x: 1764261456.579142
[2025-11-28 05:13:48] 2025-11-28 04:12:48,718 | INFO     | mean y: 2869893.3698224854
[2025-11-28 05:13:48] 2025-11-28 04:12:48,718 | INFO     | intersect: -6824372961.7755575
[2025-11-28 05:13:48] 2025-11-28 04:12:48,720 | INFO     | chi2: 8.29657188202596
[2025-11-28 05:13:48] 2025-11-28 04:12:48,720 | INFO     | current memory leak: 3.87 B/s (using 1352 data points, chi2=8.30)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,721 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | ..............................
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . Timing measurements:
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . get job = 0 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . initial setup = 6 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . payload setup = 122 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . stage-in = 0 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . payload execution = 83598 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,722 | INFO     | . stage-out = 3 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,723 | INFO     | . log creation = 0 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,723 | INFO     | ..............................
[2025-11-28 05:13:48] 2025-11-28 04:12:48,856 | INFO     | 
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | job summary report
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | --------------------------------------------------
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | PanDA job id: 6895358869
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | task id: 47556137
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | errors: (none)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | pilot state: finished 
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | transexitcode: 0
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | exeerrorcode: 0
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | exeerrordiag: 
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | exitcode: 0
[2025-11-28 05:13:48] 2025-11-28 04:12:48,857 | INFO     | exitmsg: OK
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | cpuconsumptiontime: 316264 s
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | nevents: 1000
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | neventsw: 0
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | pid: 5025
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | pgrp: 5025
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | corecount: 8
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | event service: False
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 44: 2284427, 55: 2284583, 66: 2284611, 76: 2284639, 87: 2284695, 98: 2284723, 100: 2285293, 
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | --------------------------------------------------
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | 
[2025-11-28 05:13:48] 2025-11-28 04:12:48,858 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,958 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:13:48] 2025-11-28 04:12:48,959 | INFO     | job 6895358869 has completed (purged errors)
[2025-11-28 05:13:48] 2025-11-28 04:12:48,959 | INFO     | overall cleanup function is called
[2025-11-28 05:13:48] 2025-11-28 04:12:49,974 | INFO     | --- collectZombieJob: --- 10, [5025]
[2025-11-28 05:13:48] 2025-11-28 04:12:49,975 | INFO     | zombie collector waiting for pid 5025
[2025-11-28 05:13:48] 2025-11-28 04:12:49,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:13:48] 2025-11-28 04:12:49,975 | INFO     | collected zombie processes
[2025-11-28 05:13:48] 2025-11-28 04:12:49,975 | INFO     | will attempt to kill all subprocesses of pid=5025
[2025-11-28 05:13:48] 2025-11-28 04:12:50,069 | INFO     | process IDs to be killed: [5025] (in reverse order)
[2025-11-28 05:13:48] 2025-11-28 04:12:50,718 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:13:48] 2025-11-28 04:12:50,718 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:13:48] 2025-11-28 04:12:50,721 | INFO     | did not find any defunct processes belonging to 5025
[2025-11-28 05:13:48] 2025-11-28 04:12:50,724 | INFO     | did not find any defunct processes belonging to 5025
[2025-11-28 05:13:48] 2025-11-28 04:12:50,726 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:13:48] 2025-11-28 04:12:50,726 | INFO     | ready for new job
[2025-11-28 05:13:48] 2025-11-28 04:12:50,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:13:48] 2025-11-28 04:12:50,731 | INFO     | ***************************************
[2025-11-28 05:13:48] 2025-11-28 04:12:50,731 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:13:48] 2025-11-28 04:12:50,731 | INFO     | ***************************************
[2025-11-28 05:13:48] 2025-11-28 04:12:50,731 | INFO     | 
[2025-11-28 05:13:48] 2025-11-28 04:12:50,731 | INFO     | pilot is running in a VM
[2025-11-28 05:13:48] 2025-11-28 04:12:50,732 | INFO     | architecture information:
[2025-11-28 05:13:48] 2025-11-28 04:12:50,732 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:13:48] 2025-11-28 04:12:50,924 | INFO     | cat /etc/os-release:
[2025-11-28 05:13:48] NAME="CentOS Linux"
[2025-11-28 05:13:48] VERSION="7 (Core)"
[2025-11-28 05:13:48] ID="centos"
[2025-11-28 05:13:48] ID_LIKE="rhel fedora"
[2025-11-28 05:13:48] VERSION_ID="7"
[2025-11-28 05:13:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:13:48] ANSI_COLOR="0;31"
[2025-11-28 05:13:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:13:48] HOME_URL="https://www.centos.org/"
[2025-11-28 05:13:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:13:48] 
[2025-11-28 05:13:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:13:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:13:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:13:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:13:48] 
[2025-11-28 05:13:48] 2025-11-28 04:12:50,924 | INFO     | ***************************************
[2025-11-28 05:13:48] 2025-11-28 04:12:51,428 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 05:13:48] 2025-11-28 04:12:51,503 | INFO     | sufficient remaining disk space (495503540224 B)
[2025-11-28 05:13:48] 2025-11-28 04:12:51,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:13:48] 2025-11-28 04:12:51,504 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:13:48] 2025-11-28 04:12:51,504 | INFO     | update_server=False
[2025-11-28 05:13:48] 2025-11-28 04:12:51,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:13:48] 2025-11-28 04:12:51,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:13:48] 2025-11-28 04:12:51,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:13:48] 2025-11-28 04:12:51,828 | INFO     | aborting loop
[2025-11-28 05:13:48] 2025-11-28 04:12:51,866 | INFO     | all data control threads have been joined
[2025-11-28 05:13:48] 2025-11-28 04:12:52,141 | INFO     | all payload control threads have been joined
[2025-11-28 05:13:48] 2025-11-28 04:12:52,509 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:52,635 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:52,761 | INFO     | all job control threads have been joined
[2025-11-28 05:13:48] 2025-11-28 04:12:52,833 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:52,872 | INFO     | [data] control thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:52,945 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,147 | INFO     | [payload] control thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,273 | INFO     | [job] validate thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:13:48] 2025-11-28 04:12:53,512 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,572 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,629 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,767 | INFO     | [job] control thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:13:48] 2025-11-28 04:12:53,915 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:53,956 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:54,878 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:12:57,365 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:13:01,562 | INFO     | job.realtimelogging is not enabled
[2025-11-28 05:13:48] 2025-11-28 04:13:02,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:13:48] 2025-11-28 04:13:20,147 | INFO     | PID=30861 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:13:48] 2025-11-28 04:13:20,148 | INFO     | .. there are 9 such processes running
[2025-11-28 05:13:48] 2025-11-28 04:13:20,149 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:13:48] 2025-11-28 04:13:20,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:13:48] 2025-11-28 04:13:20,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:13:48] 2025-11-28 04:13:37,609 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:13:48] 2025-11-28 04:13:39,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140599704041280)>', '<ExcThread(monitor, started 140598967265024)>']
[2025-11-28 05:13:48] 2025-11-28 04:13:39,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:13:48] 2025-11-28 04:13:39,264 | INFO     | [monitor] control thread has ended
[2025-11-28 05:13:48] 2025-11-28 04:13:44,177 | INFO     | all workflow threads have been joined
[2025-11-28 05:13:48] 2025-11-28 04:13:44,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:13:48] 2025-11-28 04:13:44,178 | INFO     | traces error code: 0
[2025-11-28 05:13:48] 2025-11-28 04:13:44,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:13:48] 2025-11-28 04:13:44,380 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:13:48] 2025-11-28 04:13:44,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:13:48] 2025-11-28 04:13:44,404 [wrapper] pilotpid: 30861
[2025-11-28 05:13:48] 2025-11-28 04:13:44,409 [wrapper] Pilot exit status: 0
[2025-11-28 05:13:48] 2025-11-28 04:13:44,525 [wrapper] pandaids: 6895358869
[2025-11-28 05:13:48] 2025-11-28 04:13:45,555 [wrapper] cleanup supervisor_pilot  8200 30862
[2025-11-28 05:13:48] 2025-11-28 04:13:45,703 [wrapper] Test setup, not cleaning
[2025-11-28 05:13:48] 2025-11-28 04:13:45,762 [wrapper] apfmon messages muted
[2025-11-28 05:13:48] 2025-11-28 04:13:45,876 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:13:48] 2025-11-28 04:13:45,987 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:13:48]  *** Error codes and diagnostics ***
[2025-11-28 05:13:48]     "exeErrorCode": 0,
[2025-11-28 05:13:48]     "exeErrorDiag": "",
[2025-11-28 05:13:48]     "pilotErrorCode": 0,
[2025-11-28 05:13:48]     "pilotErrorDiag": "",
[2025-11-28 05:13:48]  *** Listing of results directory ***
[2025-11-28 05:13:48] total 1330296
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc      5112 Nov 23 14:09 queuedata.json
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc    576529 Nov 23 14:09 pilot3.tar.gz
[2025-11-28 05:13:48] -rwx------. 1 boinc boinc     36292 Nov 23 14:09 runpilot2-wrapper.sh
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc       100 Nov 27 05:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:13:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 05:48 run_atlas
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc       105 Nov 27 05:48 job.xml
[2025-11-28 05:13:48] -rw-r--r--. 2 boinc boinc 409272853 Nov 27 05:48 EVNT.47483658._000741.pool.root.1
[2025-11-28 05:13:48] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:48 start_atlas.sh
[2025-11-28 05:13:48] drwxrwx--x. 2 boinc boinc        68 Nov 27 05:48 shared
[2025-11-28 05:13:48] -rw-r--r--. 2 boinc boinc    590102 Nov 27 05:48 input.tar.gz
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc      6391 Nov 27 05:48 init_data.xml
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc         0 Nov 27 05:48 boinc_lockfile
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc      2786 Nov 27 05:48 pandaJob.out
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc    991570 Nov 27 05:52 agis_schedconf.cvmfs.json
[2025-11-28 05:13:48] drwx------. 5 boinc boinc      4096 Nov 27 05:52 pilot3
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc       533 Nov 28 04:49 boinc_task_state.xml
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc 921703891 Nov 28 05:09 HITS.47556137._007370.pool.root.1
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc      1028 Nov 28 05:11 memory_monitor_summary.json
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc   1516240 Nov 28 05:11 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc   2455896 Nov 28 05:11 log.47556137._007370.job.log.tgz.1
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc      8622 Nov 28 05:12 heartbeat.json
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc      8192 Nov 28 05:13 boinc_mmap_file
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc        29 Nov 28 05:13 wrapper_checkpoint.txt
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc        95 Nov 28 05:13 pilot_heartbeat.json
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc      4956 Nov 28 05:13 pilotlog.txt
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc  11214081 Nov 28 05:13 log.47556137._007370.job.log.1
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc       353 Nov 28 05:13 output.list
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc       620 Nov 28 05:13 runtime_log
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc  13690880 Nov 28 05:13 result.tar.gz
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc      8817 Nov 28 05:13 runtime_log.err
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc       662 Nov 28 05:13 foFNDml1Oh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1uKKDmUbmmpm.diag
[2025-11-28 05:13:48] -rw-r--r--. 1 boinc boinc     21399 Nov 28 05:13 stderr.txt
[2025-11-28 05:13:48] HITS file was successfully produced:
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc 921703891 Nov 28 05:09 shared/HITS.pool.root.1
[2025-11-28 05:13:48]  *** Contents of shared directory: ***
[2025-11-28 05:13:48] total 1313756
[2025-11-28 05:13:48] -rw-r--r--. 2 boinc boinc 409272853 Nov 27 05:48 ATLAS.root_0
[2025-11-28 05:13:48] -rw-r--r--. 2 boinc boinc     15847 Nov 27 05:48 start_atlas.sh
[2025-11-28 05:13:48] -rw-r--r--. 2 boinc boinc    590102 Nov 27 05:48 input.tar.gz
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc 921703891 Nov 28 05:09 HITS.pool.root.1
[2025-11-28 05:13:48] -rw-------. 1 boinc boinc  13690880 Nov 28 05:13 result.tar.gz
05:13:50 (27088): run_atlas exited; CPU time 316831.475916
05:13:50 (27088): called boinc_finish(0)

</stderr_txt>
]]>

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