Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:29:16 (24531): wrapper (7.7.26015): starting
14:29:16 (24531): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 14:29:16] Arguments: --nthreads 12
[2025-11-24 14:29:16] Threads: 12
[2025-11-24 14:29:16] Checking for CVMFS
[2025-11-24 14:29:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:29:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:29:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:29:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:29:16] 2.11.2.0 30551 115164 92208 153257 3 81 15297527 20275200 1 130560 0 51113517 99.916 6305048 28791 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:29:16] CVMFS is ok
[2025-11-24 14:29:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:29:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:29:16] Further information can be found at the LHC@home message board.
[2025-11-24 14:29:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:29:16] Checking for apptainer binary...
[2025-11-24 14:29:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:29:16] Running /usr/bin/apptainer --version
[2025-11-24 14:29:16] apptainer version 1.3.2-1.el7
[2025-11-24 14:29:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:29:18] c-205-16.aglt2.org
[2025-11-24 14:29:18] apptainer works
[2025-11-24 14:29:18] Set ATHENA_PROC_NUMBER=12
[2025-11-24 14:29:18] Set ATHENA_CORE_NUMBER=12
[2025-11-24 14:29:18] Starting ATLAS job with PandaID=6895351856
[2025-11-24 14:29:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:35:20]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:35:20] 2025-11-25 02:34:22,662 | INFO     | monitor loop #1910: job 0:6895351856 is in state 'finished'
[2025-11-24 21:35:20] 2025-11-25 02:34:22,662 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:35:20] 2025-11-25 02:34:22,856 | INFO     | time since job start (25489s) is within the limit (172800.0s)
[2025-11-24 21:35:20] 2025-11-25 02:34:23,976 | INFO     | PID=28297 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 21:35:20] 2025-11-25 02:34:24,245 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 21:35:20] 2025-11-25 02:34:24,249 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-24 21:35:20] 2025-11-25 02:34:24,252 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895351856/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,253 | INFO     | extracted standard info from prmon json
[2025-11-24 21:35:20] 2025-11-25 02:34:24,253 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:35:20] 2025-11-25 02:34:24,253 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:35:20] 2025-11-25 02:34:24,260 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:35:20] 2025-11-25 02:34:24,261 | INFO     | sum of square deviations: 22646737867.5529
[2025-11-24 21:35:20] 2025-11-25 02:34:24,264 | INFO     | sum of deviations: 308864403930.8686
[2025-11-24 21:35:20] 2025-11-25 02:34:24,264 | INFO     | mean x: 1764025321.7631578
[2025-11-24 21:35:20] 2025-11-25 02:34:24,265 | INFO     | mean y: 3412987.251196172
[2025-11-24 21:35:20] 2025-11-25 02:34:24,265 | INFO     | intersect: -24055002521.0575
[2025-11-24 21:35:20] 2025-11-25 02:34:24,265 | INFO     | chi2: 6.495185809692289
[2025-11-24 21:35:20] 2025-11-25 02:34:24,266 | INFO     | sum of square deviations: 21843770314.70209
[2025-11-24 21:35:20] 2025-11-25 02:34:24,270 | INFO     | sum of deviations: 477159195380.1846
[2025-11-24 21:35:20] 2025-11-25 02:34:24,270 | INFO     | mean x: 1764025169.2663438
[2025-11-24 21:35:20] 2025-11-25 02:34:24,271 | INFO     | mean y: 3444921.3801452783
[2025-11-24 21:35:20] 2025-11-25 02:34:24,271 | INFO     | intersect: -38530233938.582825
[2025-11-24 21:35:20] 2025-11-25 02:34:24,271 | INFO     | chi2: 3.177365277783137
[2025-11-24 21:35:20] 2025-11-25 02:34:24,271 | INFO     | current chi2=3.177365277783137 (change=51.081225835883124 %)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,272 | INFO     | sum of square deviations: 21060012424.343227
[2025-11-24 21:35:20] 2025-11-25 02:34:24,275 | INFO     | sum of deviations: 536196395901.35834
[2025-11-24 21:35:20] 2025-11-25 02:34:24,276 | INFO     | mean x: 1764025016.7696078
[2025-11-24 21:35:20] 2025-11-25 02:34:24,276 | INFO     | mean y: 3456361.1740196077
[2025-11-24 21:35:20] 2025-11-25 02:34:24,276 | INFO     | intersect: -44909330830.64999
[2025-11-24 21:35:20] 2025-11-25 02:34:24,276 | INFO     | chi2: 2.536981672858655
[2025-11-24 21:35:20] 2025-11-25 02:34:24,276 | INFO     | current chi2=2.536981672858655 (change=20.154547838808156 %)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,276 | INFO     | right removable region: 407
[2025-11-24 21:35:20] 2025-11-25 02:34:24,277 | INFO     | sum of square deviations: 21843703214.702084
[2025-11-24 21:35:20] 2025-11-25 02:34:24,281 | INFO     | sum of deviations: 167933948711.5635
[2025-11-24 21:35:20] 2025-11-25 02:34:24,281 | INFO     | mean x: 1764025474.2663438
[2025-11-24 21:35:20] 2025-11-25 02:34:24,281 | INFO     | mean y: 3439674.7312348667
[2025-11-24 21:35:20] 2025-11-25 02:34:24,281 | INFO     | intersect: -13558352509.02033
[2025-11-24 21:35:20] 2025-11-25 02:34:24,281 | INFO     | chi2: 4.108186146371912
[2025-11-24 21:35:20] 2025-11-25 02:34:24,282 | INFO     | current chi2=4.108186146371912 (change=36.75029065001394 %)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,282 | INFO     | sum of square deviations: 21059903294.87997
[2025-11-24 21:35:20] 2025-11-25 02:34:24,286 | INFO     | sum of deviations: 136144155285.52725
[2025-11-24 21:35:20] 2025-11-25 02:34:24,286 | INFO     | mean x: 1764025626.7671568
[2025-11-24 21:35:20] 2025-11-25 02:34:24,286 | INFO     | mean y: 3445853.531862745
[2025-11-24 21:35:20] 2025-11-25 02:34:24,286 | INFO     | intersect: -11400299714.313402
[2025-11-24 21:35:20] 2025-11-25 02:34:24,287 | INFO     | chi2: 4.049673098869064
[2025-11-24 21:35:20] 2025-11-25 02:34:24,287 | INFO     | current chi2=4.049673098869064 (change=1.4243037052866376 %)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,287 | INFO     | left removable region: 20
[2025-11-24 21:35:20] 2025-11-25 02:34:24,287 | INFO     | sum of square deviations: 17972554883.416042
[2025-11-24 21:35:20] 2025-11-25 02:34:24,291 | INFO     | sum of deviations: 322203554454.5218
[2025-11-24 21:35:20] 2025-11-25 02:34:24,291 | INFO     | mean x: 1764025596.2764857
[2025-11-24 21:35:20] 2025-11-25 02:34:24,291 | INFO     | mean y: 3498789.2661498706
[2025-11-24 21:35:20] 2025-11-25 02:34:24,291 | INFO     | intersect: -31621126699.762257
[2025-11-24 21:35:20] 2025-11-25 02:34:24,291 | INFO     | chi2: 0.026827487823627778
[2025-11-24 21:35:20] 2025-11-25 02:34:24,292 | INFO     | current memory leak: 17.93 B/s (using 387 data points, chi2=0.03)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,292 | INFO     | could have reported an average CPU frequency of 2378 MHz (18 samples)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,292 | INFO     | ..............................
[2025-11-24 21:35:20] 2025-11-25 02:34:24,292 | INFO     | . Timing measurements:
[2025-11-24 21:35:20] 2025-11-25 02:34:24,292 | INFO     | . get job = 0 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | . initial setup = 2 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | . payload setup = 7 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | . stage-in = 0 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | . payload execution = 25452 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | . stage-out = 3 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | . log creation = 0 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,293 | INFO     | ..............................
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | 
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | job summary report
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | --------------------------------------------------
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | PanDA job id: 6895351856
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | task id: 47556149
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | errors: (none)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | pilot state: finished 
[2025-11-24 21:35:20] 2025-11-25 02:34:24,382 | INFO     | transexitcode: 0
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | exeerrorcode: 0
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | exeerrordiag: 
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | exitcode: 0
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | exitmsg: OK
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | cpuconsumptiontime: 291450 s
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | nevents: 1000
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | neventsw: 0
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | pid: 2362
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | pgrp: 2362
[2025-11-24 21:35:20] 2025-11-25 02:34:24,383 | INFO     | corecount: 12
[2025-11-24 21:35:20] 2025-11-25 02:34:24,384 | INFO     | event service: False
[2025-11-24 21:35:20] 2025-11-25 02:34:24,384 | INFO     | sizes: {0: 2284208, 5: 2284470, 11: 2284526, 25463: 2321678, 25468: 2330672, 25469: 2330728, 25474: 2331102}
[2025-11-24 21:35:20] 2025-11-25 02:34:24,384 | INFO     | --------------------------------------------------
[2025-11-24 21:35:20] 2025-11-25 02:34:24,384 | INFO     | 
[2025-11-24 21:35:20] 2025-11-25 02:34:24,384 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 21:35:20] 2025-11-25 02:34:24,414 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,415 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,415 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,415 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,416 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,416 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,416 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,416 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,416 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,417 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,417 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,417 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:35:20] 2025-11-25 02:34:24,417 | INFO     | job 6895351856 has completed (purged errors)
[2025-11-24 21:35:20] 2025-11-25 02:34:24,418 | INFO     | overall cleanup function is called
[2025-11-24 21:35:20] 2025-11-25 02:34:25,434 | INFO     | --- collectZombieJob: --- 10, [2362]
[2025-11-24 21:35:20] 2025-11-25 02:34:25,434 | INFO     | zombie collector waiting for pid 2362
[2025-11-24 21:35:20] 2025-11-25 02:34:25,434 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:35:20] 2025-11-25 02:34:25,435 | INFO     | collected zombie processes
[2025-11-24 21:35:20] 2025-11-25 02:34:25,435 | INFO     | will attempt to kill all subprocesses of pid=2362
[2025-11-24 21:35:20] 2025-11-25 02:34:25,527 | INFO     | process IDs to be killed: [2362] (in reverse order)
[2025-11-24 21:35:20] 2025-11-25 02:34:25,577 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:35:20] 2025-11-25 02:34:25,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:35:20] 2025-11-25 02:34:25,581 | INFO     | did not find any defunct processes belonging to 2362
[2025-11-24 21:35:20] 2025-11-25 02:34:25,584 | INFO     | did not find any defunct processes belonging to 2362
[2025-11-24 21:35:20] 2025-11-25 02:34:25,586 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:35:20] 2025-11-25 02:34:25,587 | INFO     | ready for new job
[2025-11-24 21:35:20] 2025-11-25 02:34:25,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:35:20] 2025-11-25 02:34:25,589 | INFO     | ***************************************
[2025-11-24 21:35:20] 2025-11-25 02:34:25,589 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:35:20] 2025-11-25 02:34:25,589 | INFO     | ***************************************
[2025-11-24 21:35:20] 2025-11-25 02:34:25,590 | INFO     | 
[2025-11-24 21:35:20] 2025-11-25 02:34:25,590 | INFO     | architecture information:
[2025-11-24 21:35:20] 2025-11-25 02:34:25,591 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:35:20] 2025-11-25 02:34:25,607 | INFO     | cat /etc/os-release:
[2025-11-24 21:35:20] NAME="CentOS Linux"
[2025-11-24 21:35:20] VERSION="7 (Core)"
[2025-11-24 21:35:20] ID="centos"
[2025-11-24 21:35:20] ID_LIKE="rhel fedora"
[2025-11-24 21:35:20] VERSION_ID="7"
[2025-11-24 21:35:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:35:20] ANSI_COLOR="0;31"
[2025-11-24 21:35:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:35:20] HOME_URL="https://www.centos.org/"
[2025-11-24 21:35:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:35:20] 
[2025-11-24 21:35:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:35:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:35:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:35:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:35:20] 
[2025-11-24 21:35:20] 2025-11-25 02:34:25,607 | INFO     | ***************************************
[2025-11-24 21:35:20] 2025-11-25 02:34:26,110 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 21:35:20] 2025-11-25 02:34:26,127 | INFO     | sufficient remaining disk space (28401729536 B)
[2025-11-24 21:35:20] 2025-11-25 02:34:26,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:35:20] 2025-11-25 02:34:26,128 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:35:20] 2025-11-25 02:34:26,128 | INFO     | update_server=False
[2025-11-24 21:35:20] 2025-11-25 02:34:26,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:35:20] 2025-11-25 02:34:26,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:35:20] 2025-11-25 02:34:26,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:35:20] 2025-11-25 02:34:26,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:35:20] 2025-11-25 02:34:26,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:35:20] 2025-11-25 02:34:26,170 | INFO     | aborting loop
[2025-11-24 21:35:20] 2025-11-25 02:34:26,450 | INFO     | all data control threads have been joined
[2025-11-24 21:35:20] 2025-11-25 02:34:26,804 | INFO     | all payload control threads have been joined
[2025-11-24 21:35:20] 2025-11-25 02:34:27,134 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,134 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,139 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,176 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,455 | INFO     | [data] control thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,647 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,674 | INFO     | all job control threads have been joined
[2025-11-24 21:35:20] 2025-11-25 02:34:27,743 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,801 | INFO     | [job] validate thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,810 | INFO     | [payload] control thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:27,878 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:28,062 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:28,134 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:28,334 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:28,659 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:28,680 | INFO     | [job] control thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:30,134 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:35:20] 2025-11-25 02:34:56,175 | INFO     | PID=28297 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 21:35:20] 2025-11-25 02:34:56,175 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:35:20] 2025-11-25 02:34:56,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:35:20] 2025-11-25 02:34:56,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:35:20] 2025-11-25 02:35:14,696 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:35:20] 2025-11-25 02:35:14,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010069071680)>', '<ExcThread(monitor, started 140009474610944)>']
[2025-11-24 21:35:20] 2025-11-25 02:35:15,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:35:20] 2025-11-25 02:35:15,269 | INFO     | [monitor] control thread has ended
[2025-11-24 21:35:20] 2025-11-25 02:35:19,874 | INFO     | all workflow threads have been joined
[2025-11-24 21:35:20] 2025-11-25 02:35:19,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:35:20] 2025-11-25 02:35:19,882 | INFO     | traces error code: 0
[2025-11-24 21:35:20] 2025-11-25 02:35:19,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:35:20] 2025-11-25 02:35:19,985 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:35:20] 2025-11-25 02:35:19,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:35:20] 2025-11-25 02:35:19,992 [wrapper] pilotpid: 28297
[2025-11-24 21:35:20] 2025-11-25 02:35:19,995 [wrapper] Pilot exit status: 0
[2025-11-24 21:35:20] 2025-11-25 02:35:20,009 [wrapper] pandaids: 6895351856
[2025-11-24 21:35:20] 2025-11-25 02:35:20,059 [wrapper] cleanup supervisor_pilot  9345 28298
[2025-11-24 21:35:20] 2025-11-25 02:35:20,063 [wrapper] Test setup, not cleaning
[2025-11-24 21:35:20] 2025-11-25 02:35:20,067 [wrapper] apfmon messages muted
[2025-11-24 21:35:20] 2025-11-25 02:35:20,071 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:35:20] 2025-11-25 02:35:20,075 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:35:20]  *** Error codes and diagnostics ***
[2025-11-24 21:35:20]     "exeErrorCode": 0,
[2025-11-24 21:35:20]     "exeErrorDiag": "",
[2025-11-24 21:35:20]     "pilotErrorCode": 0,
[2025-11-24 21:35:20]     "pilotErrorDiag": "",
[2025-11-24 21:35:20]  *** Listing of results directory ***
[2025-11-24 21:35:20] total 1299432
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 20:20 pilot3.tar.gz
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 20:24 queuedata.json
[2025-11-24 21:35:20] -rwx------ 1 boincer umatlas     36292 Nov 22 20:25 runpilot2-wrapper.sh
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas       100 Nov 24 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:35:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 14:29 run_atlas
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas       105 Nov 24 14:29 job.xml
[2025-11-24 21:35:20] -rw-r--r-- 2 boincer umatlas 406512264 Nov 24 14:29 EVNT.47483658._001128.pool.root.1
[2025-11-24 21:35:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:29 start_atlas.sh
[2025-11-24 21:35:20] drwxrwx--x 2 boincer umatlas      4096 Nov 24 14:29 shared
[2025-11-24 21:35:20] -rw-r--r-- 2 boincer umatlas    590105 Nov 24 14:29 input.tar.gz
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas         0 Nov 24 14:29 boinc_lockfile
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas      2784 Nov 24 14:29 pandaJob.out
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas        57 Nov 24 14:29 setup.sh.local
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas    991801 Nov 24 14:29 agis_schedconf.cvmfs.json
[2025-11-24 21:35:20] drwx------ 5 boincer umatlas      4096 Nov 24 14:29 pilot3
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas       532 Nov 24 21:24 boinc_task_state.xml
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas      5956 Nov 24 21:28 init_data.xml
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas 908719660 Nov 24 21:33 HITS.47556149._001147.pool.root.1
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas      1061 Nov 24 21:34 memory_monitor_summary.json
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas   1516227 Nov 24 21:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas   2165078 Nov 24 21:34 log.47556149._001147.job.log.tgz.1
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas      8676 Nov 24 21:34 heartbeat.json
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas        95 Nov 24 21:34 pilot_heartbeat.json
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 21:35 boinc_mmap_file
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas        29 Nov 24 21:35 wrapper_checkpoint.txt
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas      4746 Nov 24 21:35 pilotlog.txt
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas   3566586 Nov 24 21:35 log.47556149._001147.job.log.1
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas       353 Nov 24 21:35 output.list
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas       620 Nov 24 21:35 runtime_log
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas   5754880 Nov 24 21:35 result.tar.gz
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 21:35 runtime_log.err
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas       670 Nov 24 21:35 jOVLDmU2Dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgWKKDmUAsjvn.diag
[2025-11-24 21:35:20] -rw-r--r-- 1 boincer umatlas     21405 Nov 24 21:35 stderr.txt
[2025-11-24 21:35:20] HITS file was successfully produced:
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas 908719660 Nov 24 21:33 shared/HITS.pool.root.1
[2025-11-24 21:35:20]  *** Contents of shared directory: ***
[2025-11-24 21:35:20] total 1290632
[2025-11-24 21:35:20] -rw-r--r-- 2 boincer umatlas 406512264 Nov 24 14:29 ATLAS.root_0
[2025-11-24 21:35:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:29 start_atlas.sh
[2025-11-24 21:35:20] -rw-r--r-- 2 boincer umatlas    590105 Nov 24 14:29 input.tar.gz
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas 908719660 Nov 24 21:33 HITS.pool.root.1
[2025-11-24 21:35:20] -rw------- 1 boincer umatlas   5754880 Nov 24 21:35 result.tar.gz
21:35:21 (24531): run_atlas exited; CPU time 284677.454493
21:35:21 (24531): called boinc_finish(0)

</stderr_txt>
]]>

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