Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:04:31 (16752): wrapper (7.7.26015): starting
15:04:31 (16752): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 15:04:31] Arguments: --nthreads 12
[2025-11-24 15:04:31] Threads: 12
[2025-11-24 15:04:31] Checking for CVMFS
[2025-11-24 15:04:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 15:04:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 15:04:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 15:04:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 15:04:31] 2.11.2.0 14820 140602 92248 153257 0 82 14554952 20275201 1 130560 0 68495880 99.962 5653872 35918 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 15:04:31] CVMFS is ok
[2025-11-24 15:04:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 15:04:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 15:04:31] Further information can be found at the LHC@home message board.
[2025-11-24 15:04:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 15:04:31] Checking for apptainer binary...
[2025-11-24 15:04:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 15:04:31] Running /usr/bin/apptainer --version
[2025-11-24 15:04:31] apptainer version 1.3.2-1.el7
[2025-11-24 15:04:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 15:04:32] c-205-27.aglt2.org
[2025-11-24 15:04:32] apptainer works
[2025-11-24 15:04:33] Set ATHENA_PROC_NUMBER=12
[2025-11-24 15:04:33] Set ATHENA_CORE_NUMBER=12
[2025-11-24 15:04:33] Starting ATLAS job with PandaID=6895371466
[2025-11-24 15:04:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:23:37]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:23:37] 2025-11-25 03:22:59,561 | INFO     | time since job start (26291s) is within the limit (172800.0s)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,703 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 22:23:37] 2025-11-25 03:23:00,707 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-24 22:23:37] 2025-11-25 03:23:00,709 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895371466/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,709 | INFO     | extracted standard info from prmon json
[2025-11-24 22:23:37] 2025-11-25 03:23:00,709 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:23:37] 2025-11-25 03:23:00,709 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:23:37] 2025-11-25 03:23:00,716 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:23:37] 2025-11-25 03:23:00,716 | INFO     | sum of square deviations: 24826121199.89791
[2025-11-24 22:23:37] 2025-11-25 03:23:00,720 | INFO     | sum of deviations: 415360887949.8495
[2025-11-24 22:23:37] 2025-11-25 03:23:00,721 | INFO     | mean x: 1764027832.2853827
[2025-11-24 22:23:37] 2025-11-25 03:23:00,721 | INFO     | mean y: 3421079.9443155453
[2025-11-24 22:23:37] 2025-11-25 03:23:00,721 | INFO     | intersect: -29510177153.40829
[2025-11-24 22:23:37] 2025-11-25 03:23:00,721 | INFO     | chi2: 6.316470755289401
[2025-11-24 22:23:37] 2025-11-25 03:23:00,722 | INFO     | sum of square deviations: 23972124096.985935
[2025-11-24 22:23:37] 2025-11-25 03:23:00,726 | INFO     | sum of deviations: 590432666404.4229
[2025-11-24 22:23:37] 2025-11-25 03:23:00,726 | INFO     | mean x: 1764027679.7887323
[2025-11-24 22:23:37] 2025-11-25 03:23:00,726 | INFO     | mean y: 3452315.1713615023
[2025-11-24 22:23:37] 2025-11-25 03:23:00,726 | INFO     | intersect: -43444494240.37911
[2025-11-24 22:23:37] 2025-11-25 03:23:00,727 | INFO     | chi2: 2.957076105474626
[2025-11-24 22:23:37] 2025-11-25 03:23:00,727 | INFO     | current chi2=2.957076105474626 (change=53.184678279427224 %)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,727 | INFO     | sum of square deviations: 23137941319.0641
[2025-11-24 22:23:37] 2025-11-25 03:23:00,731 | INFO     | sum of deviations: 621818560071.9408
[2025-11-24 22:23:37] 2025-11-25 03:23:00,731 | INFO     | mean x: 1764027527.2921615
[2025-11-24 22:23:37] 2025-11-25 03:23:00,731 | INFO     | mean y: 3458004.2850356293
[2025-11-24 22:23:37] 2025-11-25 03:23:00,731 | INFO     | intersect: -47403743951.24515
[2025-11-24 22:23:37] 2025-11-25 03:23:00,732 | INFO     | chi2: 2.596700151816744
[2025-11-24 22:23:37] 2025-11-25 03:23:00,732 | INFO     | current chi2=2.596700151816744 (change=12.186901547467615 %)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,732 | INFO     | right removable region: 420
[2025-11-24 22:23:37] 2025-11-25 03:23:00,733 | INFO     | sum of square deviations: 23972049066.98594
[2025-11-24 22:23:37] 2025-11-25 03:23:00,736 | INFO     | sum of deviations: 268866748530.83096
[2025-11-24 22:23:37] 2025-11-25 03:23:00,737 | INFO     | mean x: 1764027984.7887323
[2025-11-24 22:23:37] 2025-11-25 03:23:00,737 | INFO     | mean y: 3447164.9647887326
[2025-11-24 22:23:37] 2025-11-25 03:23:00,737 | INFO     | intersect: -19781614481.714626
[2025-11-24 22:23:37] 2025-11-25 03:23:00,737 | INFO     | chi2: 3.9099768010277898
[2025-11-24 22:23:37] 2025-11-25 03:23:00,737 | INFO     | current chi2=3.9099768010277898 (change=38.09871125020911 %)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,738 | INFO     | sum of square deviations: 23137843108.2233
[2025-11-24 22:23:37] 2025-11-25 03:23:00,742 | INFO     | sum of deviations: 235304294319.10425
[2025-11-24 22:23:37] 2025-11-25 03:23:00,742 | INFO     | mean x: 1764028137.287411
[2025-11-24 22:23:37] 2025-11-25 03:23:00,742 | INFO     | mean y: 3453294.45368171
[2025-11-24 22:23:37] 2025-11-25 03:23:00,742 | INFO     | intersect: -17936135718.31543
[2025-11-24 22:23:37] 2025-11-25 03:23:00,743 | INFO     | chi2: 3.8599559491300677
[2025-11-24 22:23:37] 2025-11-25 03:23:00,743 | INFO     | current chi2=3.8599559491300677 (change=1.2793132656074442 %)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,743 | INFO     | left removable region: 20
[2025-11-24 22:23:37] 2025-11-25 03:23:00,743 | INFO     | sum of square deviations: 19845299480.597507
[2025-11-24 22:23:37] 2025-11-25 03:23:00,747 | INFO     | sum of deviations: 384783174160.9073
[2025-11-24 22:23:37] 2025-11-25 03:23:00,747 | INFO     | mean x: 1764028106.7975
[2025-11-24 22:23:37] 2025-11-25 03:23:00,747 | INFO     | mean y: 3502279.3075
[2025-11-24 22:23:37] 2025-11-25 03:23:00,747 | INFO     | intersect: -34199475353.06439
[2025-11-24 22:23:37] 2025-11-25 03:23:00,748 | INFO     | chi2: 0.05561468096287556
[2025-11-24 22:23:37] 2025-11-25 03:23:00,748 | INFO     | current memory leak: 19.39 B/s (using 400 data points, chi2=0.06)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,748 | INFO     | could have reported an average CPU frequency of 2408 MHz (18 samples)
[2025-11-24 22:23:37] 2025-11-25 03:23:00,748 | INFO     | ..............................
[2025-11-24 22:23:37] 2025-11-25 03:23:00,748 | INFO     | . Timing measurements:
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . get job = 0 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . initial setup = 2 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . payload setup = 7 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . stage-in = 0 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . payload execution = 26251 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . stage-out = 3 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | . log creation = 0 s
[2025-11-24 22:23:37] 2025-11-25 03:23:00,749 | INFO     | ..............................
[2025-11-24 22:23:37] 2025-11-25 03:23:01,325 | INFO     | 
[2025-11-24 22:23:37] 2025-11-25 03:23:01,325 | INFO     | job summary report
[2025-11-24 22:23:37] 2025-11-25 03:23:01,325 | INFO     | --------------------------------------------------
[2025-11-24 22:23:37] 2025-11-25 03:23:01,325 | INFO     | PanDA job id: 6895371466
[2025-11-24 22:23:37] 2025-11-25 03:23:01,325 | INFO     | task id: 47556137
[2025-11-24 22:23:37] 2025-11-25 03:23:01,326 | INFO     | errors: (none)
[2025-11-24 22:23:37] 2025-11-25 03:23:01,326 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:23:37] 2025-11-25 03:23:01,326 | INFO     | pilot state: finished 
[2025-11-24 22:23:37] 2025-11-25 03:23:01,326 | INFO     | transexitcode: 0
[2025-11-24 22:23:37] 2025-11-25 03:23:01,326 | INFO     | exeerrorcode: 0
[2025-11-24 22:23:37] 2025-11-25 03:23:01,326 | INFO     | exeerrordiag: 
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | exitcode: 0
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | exitmsg: OK
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | cpuconsumptiontime: 301687 s
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | nevents: 1000
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | neventsw: 0
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | pid: 27984
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | pgrp: 27984
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | corecount: 12
[2025-11-24 22:23:37] 2025-11-25 03:23:01,327 | INFO     | event service: False
[2025-11-24 22:23:37] 2025-11-25 03:23:01,328 | INFO     | sizes: {0: 2284259, 5: 2284521, 11: 2284577, 26262: 2322010, 26266: 2331004, 26269: 2331060, 26276: 2331434}
[2025-11-24 22:23:37] 2025-11-25 03:23:01,328 | INFO     | --------------------------------------------------
[2025-11-24 22:23:37] 2025-11-25 03:23:01,328 | INFO     | 
[2025-11-24 22:23:37] 2025-11-25 03:23:01,328 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 22:23:37] 2025-11-25 03:23:01,350 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,351 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,351 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,351 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,351 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,351 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,351 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,353 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,353 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:23:37] 2025-11-25 03:23:01,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,353 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:23:37] 2025-11-25 03:23:01,354 | INFO     | job 6895371466 has completed (purged errors)
[2025-11-24 22:23:37] 2025-11-25 03:23:01,354 | INFO     | overall cleanup function is called
[2025-11-24 22:23:37] 2025-11-25 03:23:02,370 | INFO     | --- collectZombieJob: --- 10, [27984]
[2025-11-24 22:23:37] 2025-11-25 03:23:02,370 | INFO     | zombie collector waiting for pid 27984
[2025-11-24 22:23:37] 2025-11-25 03:23:02,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:23:37] 2025-11-25 03:23:02,371 | INFO     | collected zombie processes
[2025-11-24 22:23:37] 2025-11-25 03:23:02,371 | INFO     | will attempt to kill all subprocesses of pid=27984
[2025-11-24 22:23:37] 2025-11-25 03:23:02,463 | INFO     | process IDs to be killed: [27984] (in reverse order)
[2025-11-24 22:23:37] 2025-11-25 03:23:02,515 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:23:37] 2025-11-25 03:23:02,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:23:37] 2025-11-25 03:23:02,519 | INFO     | did not find any defunct processes belonging to 27984
[2025-11-24 22:23:37] 2025-11-25 03:23:02,521 | INFO     | did not find any defunct processes belonging to 27984
[2025-11-24 22:23:37] 2025-11-25 03:23:02,523 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:23:37] 2025-11-25 03:23:02,523 | INFO     | ready for new job
[2025-11-24 22:23:37] 2025-11-25 03:23:02,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:23:37] 2025-11-25 03:23:02,525 | INFO     | ***************************************
[2025-11-24 22:23:37] 2025-11-25 03:23:02,526 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:23:37] 2025-11-25 03:23:02,526 | INFO     | ***************************************
[2025-11-24 22:23:37] 2025-11-25 03:23:02,526 | INFO     | 
[2025-11-24 22:23:37] 2025-11-25 03:23:02,526 | INFO     | architecture information:
[2025-11-24 22:23:37] 2025-11-25 03:23:02,527 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:23:37] 2025-11-25 03:23:02,541 | INFO     | cat /etc/os-release:
[2025-11-24 22:23:37] NAME="CentOS Linux"
[2025-11-24 22:23:37] VERSION="7 (Core)"
[2025-11-24 22:23:37] ID="centos"
[2025-11-24 22:23:37] ID_LIKE="rhel fedora"
[2025-11-24 22:23:37] VERSION_ID="7"
[2025-11-24 22:23:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:23:37] ANSI_COLOR="0;31"
[2025-11-24 22:23:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:23:37] HOME_URL="https://www.centos.org/"
[2025-11-24 22:23:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:23:37] 
[2025-11-24 22:23:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:23:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:23:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:23:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:23:37] 
[2025-11-24 22:23:37] 2025-11-25 03:23:02,542 | INFO     | ***************************************
[2025-11-24 22:23:37] 2025-11-25 03:23:03,045 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 22:23:37] 2025-11-25 03:23:03,061 | INFO     | sufficient remaining disk space (28227665920 B)
[2025-11-24 22:23:37] 2025-11-25 03:23:03,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:23:37] 2025-11-25 03:23:03,062 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:23:37] 2025-11-25 03:23:03,062 | INFO     | update_server=False
[2025-11-24 22:23:37] 2025-11-25 03:23:03,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:23:37] 2025-11-25 03:23:03,095 | INFO     | all payload control threads have been joined
[2025-11-24 22:23:37] 2025-11-25 03:23:03,103 | INFO     | all data control threads have been joined
[2025-11-24 22:23:37] 2025-11-25 03:23:03,413 | INFO     | all job control threads have been joined
[2025-11-24 22:23:37] 2025-11-25 03:23:03,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 22:23:37] 2025-11-25 03:23:03,497 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 22:23:37] 2025-11-25 03:23:03,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:23:37] 2025-11-25 03:23:03,497 | INFO     | will abort loop
[2025-11-24 22:23:37] 2025-11-25 03:23:03,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:23:37] 2025-11-25 03:23:04,068 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,078 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,101 | INFO     | [payload] control thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,108 | INFO     | [data] control thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:23:37] 2025-11-25 03:23:04,340 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,419 | INFO     | [job] control thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,501 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,523 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:04,580 | INFO     | [job] validate thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:05,264 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:05,491 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:05,522 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:05,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:23:37] 2025-11-25 03:23:05,980 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:06,856 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:08,140 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:13,909 | INFO     | job.realtimelogging is not enabled
[2025-11-24 22:23:37] 2025-11-25 03:23:14,914 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:23:37] 2025-11-25 03:23:30,969 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:23:37] 2025-11-25 03:23:32,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289790609216)>', '<ExcThread(monitor, started 140288957851392)>']
[2025-11-24 22:23:37] 2025-11-25 03:23:32,766 | INFO     | PID=20444 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 22:23:37] 2025-11-25 03:23:32,766 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:23:37] 2025-11-25 03:23:32,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:23:37] 2025-11-25 03:23:32,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:23:37] 2025-11-25 03:23:32,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:23:37] 2025-11-25 03:23:32,766 | INFO     | [monitor] control thread has ended
[2025-11-24 22:23:37] 2025-11-25 03:23:37,567 | INFO     | all workflow threads have been joined
[2025-11-24 22:23:37] 2025-11-25 03:23:37,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:23:37] 2025-11-25 03:23:37,567 | INFO     | traces error code: 0
[2025-11-24 22:23:37] 2025-11-25 03:23:37,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:23:37] 2025-11-25 03:23:37,651 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:23:37] 2025-11-25 03:23:37,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:23:37] 2025-11-25 03:23:37,659 [wrapper] pilotpid: 20444
[2025-11-24 22:23:37] 2025-11-25 03:23:37,663 [wrapper] Pilot exit status: 0
[2025-11-24 22:23:37] 2025-11-25 03:23:37,677 [wrapper] pandaids: 6895371466
[2025-11-24 22:23:37] 2025-11-25 03:23:37,718 [wrapper] cleanup supervisor_pilot 14701 20445
[2025-11-24 22:23:37] 2025-11-25 03:23:37,721 [wrapper] Test setup, not cleaning
[2025-11-24 22:23:37] 2025-11-25 03:23:37,725 [wrapper] apfmon messages muted
[2025-11-24 22:23:37] 2025-11-25 03:23:37,729 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:23:37] 2025-11-25 03:23:37,733 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:23:37]  *** Error codes and diagnostics ***
[2025-11-24 22:23:37]     "exeErrorCode": 0,
[2025-11-24 22:23:37]     "exeErrorDiag": "",
[2025-11-24 22:23:37]     "pilotErrorCode": 0,
[2025-11-24 22:23:37]     "pilotErrorDiag": "",
[2025-11-24 22:23:37]  *** Listing of results directory ***
[2025-11-24 22:23:37] total 1331308
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 15:42 pilot3.tar.gz
[2025-11-24 22:23:37] -rwx------ 1 boincer umatlas     36292 Nov 23 16:22 runpilot2-wrapper.sh
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 16:22 queuedata.json
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas       100 Nov 24 15:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:23:37] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 15:04 run_atlas
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas       105 Nov 24 15:04 job.xml
[2025-11-24 22:23:37] -rw-r--r-- 2 boincer umatlas 411548400 Nov 24 15:04 EVNT.47483658._000898.pool.root.1
[2025-11-24 22:23:37] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 15:04 start_atlas.sh
[2025-11-24 22:23:37] drwxrwx--x 2 boincer umatlas      4096 Nov 24 15:04 shared
[2025-11-24 22:23:37] -rw-r--r-- 2 boincer umatlas    590099 Nov 24 15:04 input.tar.gz
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas         0 Nov 24 15:04 boinc_lockfile
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 15:04 pandaJob.out
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas        57 Nov 24 15:04 setup.sh.local
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas    991801 Nov 24 15:04 agis_schedconf.cvmfs.json
[2025-11-24 22:23:37] drwx------ 5 boincer umatlas      4096 Nov 24 15:04 pilot3
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas       532 Nov 24 22:14 boinc_task_state.xml
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas      5956 Nov 24 22:20 init_data.xml
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas 935994122 Nov 24 22:22 HITS.47556137._008850.pool.root.1
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas      1062 Nov 24 22:22 memory_monitor_summary.json
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas   1516227 Nov 24 22:22 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas   2198893 Nov 24 22:22 log.47556137._008850.job.log.tgz.1
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas        95 Nov 24 22:22 pilot_heartbeat.json
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas      8666 Nov 24 22:23 heartbeat.json
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 22:23 boinc_mmap_file
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas        29 Nov 24 22:23 wrapper_checkpoint.txt
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas      5004 Nov 24 22:23 pilotlog.txt
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas   3698163 Nov 24 22:23 log.47556137._008850.job.log.1
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas       353 Nov 24 22:23 output.list
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas       620 Nov 24 22:23 runtime_log
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas   5918720 Nov 24 22:23 result.tar.gz
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 22:23 runtime_log.err
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas       670 Nov 24 22:23 7FENDmiiWh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXlIKDm1d8Qjn.diag
[2025-11-24 22:23:37] -rw-r--r-- 1 boincer umatlas     21257 Nov 24 22:23 stderr.txt
[2025-11-24 22:23:37] HITS file was successfully produced:
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas 935994122 Nov 24 22:22 shared/HITS.pool.root.1
[2025-11-24 22:23:37]  *** Contents of shared directory: ***
[2025-11-24 22:23:37] total 1322348
[2025-11-24 22:23:37] -rw-r--r-- 2 boincer umatlas 411548400 Nov 24 15:04 ATLAS.root_0
[2025-11-24 22:23:37] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 15:04 start_atlas.sh
[2025-11-24 22:23:37] -rw-r--r-- 2 boincer umatlas    590099 Nov 24 15:04 input.tar.gz
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas 935994122 Nov 24 22:22 HITS.pool.root.1
[2025-11-24 22:23:37] -rw------- 1 boincer umatlas   5918720 Nov 24 22:23 result.tar.gz
22:23:39 (16752): run_atlas exited; CPU time 294811.444084
22:23:39 (16752): called boinc_finish(0)

</stderr_txt>
]]>

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