Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:20:00 (29713): wrapper (7.7.26015): starting
14:20:00 (29713): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:20:00] Arguments: --nthreads 8
[2025-11-24 14:20:00] Threads: 8
[2025-11-24 14:20:00] Checking for CVMFS
[2025-11-24 14:20:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:20:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:20:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:20:00] 2.11.2.0 6491 6478 66984 153257 3 81 11399446 18432000 915 130560 0 5736981 99.992 230637 15069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:20:00] CVMFS is ok
[2025-11-24 14:20:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:20:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:20:00] Further information can be found at the LHC@home message board.
[2025-11-24 14:20:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:20:00] Checking for apptainer binary...
[2025-11-24 14:20:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:20:00] Running /usr/bin/apptainer --version
[2025-11-24 14:20:00] apptainer version 1.3.2-1.el7
[2025-11-24 14:20:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:20:01] c-206-29.aglt2.org
[2025-11-24 14:20:01] apptainer works
[2025-11-24 14:20:01] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:20:01] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:20:01] Starting ATLAS job with PandaID=6893935688
[2025-11-24 14:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:41:19]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:41:19] 2025-11-25 04:40:43,394 | INFO     | executing command: lscpu
[2025-11-24 23:41:19] 2025-11-25 04:40:43,430 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 23:41:19] 2025-11-25 04:40:44,010 | INFO     | time since job start (33631s) is within the limit (172800.0s)
[2025-11-24 23:41:19] 2025-11-25 04:40:44,946 | INFO     | monitor loop #2393: job 0:6893935688 is in state 'finished'
[2025-11-24 23:41:19] 2025-11-25 04:40:44,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,016 | INFO     | time since job start (33633s) is within the limit (172800.0s)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,803 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 23:41:19] 2025-11-25 04:40:46,809 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-11-24 23:41:19] 2025-11-25 04:40:46,814 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893935688/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,815 | INFO     | extracted standard info from prmon json
[2025-11-24 23:41:19] 2025-11-25 04:40:46,815 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:41:19] 2025-11-25 04:40:46,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:41:19] 2025-11-25 04:40:46,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 23:41:19] 2025-11-25 04:40:46,816 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 23:41:19] 2025-11-25 04:40:46,831 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:41:19] 2025-11-25 04:40:46,832 | INFO     | sum of square deviations: 51871856300.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,843 | INFO     | sum of deviations: -32104531068.000008
[2025-11-24 23:41:19] 2025-11-25 04:40:46,843 | INFO     | mean x: 1764028814.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,844 | INFO     | mean y: 2568792.823956443
[2025-11-24 23:41:19] 2025-11-25 04:40:46,844 | INFO     | intersect: 1094361566.46931
[2025-11-24 23:41:19] 2025-11-25 04:40:46,845 | INFO     | chi2: 1.5960885318371743
[2025-11-24 23:41:19] 2025-11-25 04:40:46,846 | INFO     | sum of square deviations: 50472509132.5
[2025-11-24 23:41:19] 2025-11-25 04:40:46,857 | INFO     | sum of deviations: -32702956226.499996
[2025-11-24 23:41:19] 2025-11-25 04:40:46,857 | INFO     | mean x: 1764028661.5
[2025-11-24 23:41:19] 2025-11-25 04:40:46,857 | INFO     | mean y: 2568727.877289377
[2025-11-24 23:41:19] 2025-11-25 04:40:46,857 | INFO     | intersect: 1145546421.890506
[2025-11-24 23:41:19] 2025-11-25 04:40:46,858 | INFO     | chi2: 1.5954303227990208
[2025-11-24 23:41:19] 2025-11-25 04:40:46,858 | INFO     | current chi2=1.5954303227990208 (change=0.04123888023904733 %)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,859 | INFO     | right removable region: 545
[2025-11-24 23:41:19] 2025-11-25 04:40:46,859 | INFO     | sum of square deviations: 50472509132.5
[2025-11-24 23:41:19] 2025-11-25 04:40:46,870 | INFO     | sum of deviations: -110039090567.49998
[2025-11-24 23:41:19] 2025-11-25 04:40:46,871 | INFO     | mean x: 1764028966.5
[2025-11-24 23:41:19] 2025-11-25 04:40:46,871 | INFO     | mean y: 2577248.2655677656
[2025-11-24 23:41:19] 2025-11-25 04:40:46,871 | INFO     | intersect: 3848475669.895556
[2025-11-24 23:41:19] 2025-11-25 04:40:46,872 | INFO     | chi2: 0.3089590715015418
[2025-11-24 23:41:19] 2025-11-25 04:40:46,872 | INFO     | current chi2=0.3089590715015418 (change=80.64273595488372 %)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,873 | INFO     | sum of square deviations: 49098557790.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,883 | INFO     | sum of deviations: -123105476709.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,884 | INFO     | mean x: 1764029119.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,884 | INFO     | mean y: 2578698.502772643
[2025-11-24 23:41:19] 2025-11-25 04:40:46,884 | INFO     | intersect: 4425552720.507183
[2025-11-24 23:41:19] 2025-11-25 04:40:46,885 | INFO     | chi2: 0.2796399840100971
[2025-11-24 23:41:19] 2025-11-25 04:40:46,885 | INFO     | current chi2=0.2796399840100971 (change=9.489634775555821 %)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,885 | INFO     | left removable region: 20
[2025-11-24 23:41:19] 2025-11-25 04:40:46,886 | INFO     | sum of square deviations: 44869864550.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,896 | INFO     | sum of deviations: -96710693993.00002
[2025-11-24 23:41:19] 2025-11-25 04:40:46,896 | INFO     | mean x: 1764029241.0
[2025-11-24 23:41:19] 2025-11-25 04:40:46,896 | INFO     | mean y: 2575700.659047619
[2025-11-24 23:41:19] 2025-11-25 04:40:46,896 | INFO     | intersect: 3804693086.838121
[2025-11-24 23:41:19] 2025-11-25 04:40:46,897 | INFO     | chi2: 0.25688472367150844
[2025-11-24 23:41:19] 2025-11-25 04:40:46,897 | INFO     | current memory leak: -2.16 B/s (using 525 data points, chi2=0.26)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,898 | INFO     | could have reported an average CPU frequency of 2522 MHz (22 samples)
[2025-11-24 23:41:19] 2025-11-25 04:40:46,898 | INFO     | ..............................
[2025-11-24 23:41:19] 2025-11-25 04:40:46,899 | INFO     | . Timing measurements:
[2025-11-24 23:41:19] 2025-11-25 04:40:46,899 | INFO     | . get job = 0 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,899 | INFO     | . initial setup = 2 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,899 | INFO     | . payload setup = 5 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,899 | INFO     | . stage-in = 0 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,899 | INFO     | . payload execution = 33600 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,900 | INFO     | . stage-out = 2 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,900 | INFO     | . log creation = 0 s
[2025-11-24 23:41:19] 2025-11-25 04:40:46,900 | INFO     | ..............................
[2025-11-24 23:41:19] 2025-11-25 04:40:47,055 | INFO     | 
[2025-11-24 23:41:19] 2025-11-25 04:40:47,059 | INFO     | job summary report
[2025-11-24 23:41:19] 2025-11-25 04:40:47,060 | INFO     | --------------------------------------------------
[2025-11-24 23:41:19] 2025-11-25 04:40:47,060 | INFO     | PanDA job id: 6893935688
[2025-11-24 23:41:19] 2025-11-25 04:40:47,060 | INFO     | task id: 47523642
[2025-11-24 23:41:19] 2025-11-25 04:40:47,060 | INFO     | errors: (none)
[2025-11-24 23:41:19] 2025-11-25 04:40:47,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:41:19] 2025-11-25 04:40:47,060 | INFO     | pilot state: finished 
[2025-11-24 23:41:19] 2025-11-25 04:40:47,061 | INFO     | transexitcode: 0
[2025-11-24 23:41:19] 2025-11-25 04:40:47,061 | INFO     | exeerrorcode: 0
[2025-11-24 23:41:19] 2025-11-25 04:40:47,061 | INFO     | exeerrordiag: 
[2025-11-24 23:41:19] 2025-11-25 04:40:47,061 | INFO     | exitcode: 0
[2025-11-24 23:41:19] 2025-11-25 04:40:47,061 | INFO     | exitmsg: OK
[2025-11-24 23:41:19] 2025-11-25 04:40:47,061 | INFO     | cpuconsumptiontime: 258739 s
[2025-11-24 23:41:19] 2025-11-25 04:40:47,062 | INFO     | nevents: 400
[2025-11-24 23:41:19] 2025-11-25 04:40:47,062 | INFO     | neventsw: 0
[2025-11-24 23:41:19] 2025-11-25 04:40:47,062 | INFO     | pid: 7769
[2025-11-24 23:41:19] 2025-11-25 04:40:47,062 | INFO     | pgrp: 7769
[2025-11-24 23:41:19] 2025-11-25 04:40:47,062 | INFO     | corecount: 8
[2025-11-24 23:41:19] 2025-11-25 04:40:47,062 | INFO     | event service: False
[2025-11-24 23:41:19] 2025-11-25 04:40:47,063 | INFO     | sizes: {0: 2283790, 1: 2283989, 5: 2284251, 11: 2284307, 33609: 2323716, 33612: 2332714, 33614: 2332898, 33618: 2333092}
[2025-11-24 23:41:19] 2025-11-25 04:40:47,063 | INFO     | --------------------------------------------------
[2025-11-24 23:41:19] 2025-11-25 04:40:47,063 | INFO     | 
[2025-11-24 23:41:19] 2025-11-25 04:40:47,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 23:41:19] 2025-11-25 04:40:47,083 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,083 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,084 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,084 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,084 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,085 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,086 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:41:19] 2025-11-25 04:40:47,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,087 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:41:19] 2025-11-25 04:40:47,087 | INFO     | job 6893935688 has completed (purged errors)
[2025-11-24 23:41:19] 2025-11-25 04:40:47,087 | INFO     | overall cleanup function is called
[2025-11-24 23:41:19] 2025-11-25 04:40:48,096 | INFO     | --- collectZombieJob: --- 10, [7769]
[2025-11-24 23:41:19] 2025-11-25 04:40:48,097 | INFO     | zombie collector waiting for pid 7769
[2025-11-24 23:41:19] 2025-11-25 04:40:48,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:41:19] 2025-11-25 04:40:48,097 | INFO     | collected zombie processes
[2025-11-24 23:41:19] 2025-11-25 04:40:48,097 | INFO     | will attempt to kill all subprocesses of pid=7769
[2025-11-24 23:41:19] 2025-11-25 04:40:48,249 | INFO     | process IDs to be killed: [7769] (in reverse order)
[2025-11-24 23:41:19] 2025-11-25 04:40:48,315 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:41:19] 2025-11-25 04:40:48,315 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:41:19] 2025-11-25 04:40:48,321 | INFO     | did not find any defunct processes belonging to 7769
[2025-11-24 23:41:19] 2025-11-25 04:40:48,326 | INFO     | did not find any defunct processes belonging to 7769
[2025-11-24 23:41:19] 2025-11-25 04:40:48,328 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:41:19] 2025-11-25 04:40:48,328 | INFO     | ready for new job
[2025-11-24 23:41:19] 2025-11-25 04:40:48,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:41:19] 2025-11-25 04:40:48,331 | INFO     | ***************************************
[2025-11-24 23:41:19] 2025-11-25 04:40:48,331 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:41:19] 2025-11-25 04:40:48,331 | INFO     | ***************************************
[2025-11-24 23:41:19] 2025-11-25 04:40:48,332 | INFO     | 
[2025-11-24 23:41:19] 2025-11-25 04:40:48,333 | INFO     | architecture information:
[2025-11-24 23:41:19] 2025-11-25 04:40:48,333 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:41:19] 2025-11-25 04:40:48,348 | INFO     | cat /etc/os-release:
[2025-11-24 23:41:19] NAME="CentOS Linux"
[2025-11-24 23:41:19] VERSION="7 (Core)"
[2025-11-24 23:41:19] ID="centos"
[2025-11-24 23:41:19] ID_LIKE="rhel fedora"
[2025-11-24 23:41:19] VERSION_ID="7"
[2025-11-24 23:41:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:41:19] ANSI_COLOR="0;31"
[2025-11-24 23:41:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:41:19] HOME_URL="https://www.centos.org/"
[2025-11-24 23:41:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:41:19] 
[2025-11-24 23:41:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:41:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:41:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:41:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:41:19] 
[2025-11-24 23:41:19] 2025-11-25 04:40:48,348 | INFO     | ***************************************
[2025-11-24 23:41:19] 2025-11-25 04:40:48,851 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 23:41:19] 2025-11-25 04:40:48,877 | INFO     | sufficient remaining disk space (26357006336 B)
[2025-11-24 23:41:19] 2025-11-25 04:40:48,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:41:19] 2025-11-25 04:40:48,877 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:41:19] 2025-11-25 04:40:48,877 | INFO     | update_server=False
[2025-11-24 23:41:19] 2025-11-25 04:40:48,878 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:41:19] 2025-11-25 04:40:48,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:41:19] 2025-11-25 04:40:48,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:41:19] 2025-11-25 04:40:48,878 | INFO     | aborting loop
[2025-11-24 23:41:19] 2025-11-25 04:40:48,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:41:19] 2025-11-25 04:40:49,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:41:19] 2025-11-25 04:40:49,838 | INFO     | all payload control threads have been joined
[2025-11-24 23:41:19] 2025-11-25 04:40:49,865 | INFO     | all job control threads have been joined
[2025-11-24 23:41:19] 2025-11-25 04:40:49,879 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:49,880 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:49,880 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:49,971 | INFO     | all data control threads have been joined
[2025-11-24 23:41:19] 2025-11-25 04:40:50,069 | INFO     | [job] validate thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,121 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,417 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,420 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,533 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,813 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,842 | INFO     | [payload] control thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,871 | INFO     | [job] control thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,885 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,977 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:50,981 | INFO     | [data] control thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:53,409 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:40:59,370 | INFO     | job.realtimelogging is not enabled
[2025-11-24 23:41:19] 2025-11-25 04:41:00,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:41:19] 2025-11-25 04:41:09,018 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:41:19] 2025-11-25 04:41:10,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981199996736)>', '<ExcThread(monitor, started 139980626192128)>']
[2025-11-24 23:41:19] 2025-11-25 04:41:15,027 | INFO     | all workflow threads have been joined
[2025-11-24 23:41:19] 2025-11-25 04:41:15,028 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:41:19] 2025-11-25 04:41:15,028 | INFO     | traces error code: 0
[2025-11-24 23:41:19] 2025-11-25 04:41:15,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:41:19] 2025-11-25 04:41:18,126 | INFO     | 33636s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | INFO     | PID=1089 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | INFO     | .. there are 3 such processes running
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:41:19] 2025-11-25 04:41:19,306 | INFO     | [monitor] control thread has ended
[2025-11-24 23:41:19] 2025-11-25 04:41:19,411 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:41:19] 2025-11-25 04:41:19,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:41:19] 2025-11-25 04:41:19,415 [wrapper] pilotpid: 1089
[2025-11-24 23:41:19] 2025-11-25 04:41:19,417 [wrapper] Pilot exit status: 0
[2025-11-24 23:41:19] 2025-11-25 04:41:19,426 [wrapper] pandaids: 6893935688
[2025-11-24 23:41:19] 2025-11-25 04:41:19,456 [wrapper] cleanup supervisor_pilot 32216 1090
[2025-11-24 23:41:19] 2025-11-25 04:41:19,459 [wrapper] Test setup, not cleaning
[2025-11-24 23:41:19] 2025-11-25 04:41:19,461 [wrapper] apfmon messages muted
[2025-11-24 23:41:19] 2025-11-25 04:41:19,463 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:41:19] 2025-11-25 04:41:19,465 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:41:19]  *** Error codes and diagnostics ***
[2025-11-24 23:41:19]     "exeErrorCode": 0,
[2025-11-24 23:41:19]     "exeErrorDiag": "",
[2025-11-24 23:41:19]     "pilotErrorCode": 0,
[2025-11-24 23:41:19]     "pilotErrorDiag": "",
[2025-11-24 23:41:19]  *** Listing of results directory ***
[2025-11-24 23:41:19] total 627696
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 10:44 pilot3.tar.gz
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 10:51 queuedata.json
[2025-11-24 23:41:19] -rwx------ 1 boincer umatlas     36292 Nov 21 10:52 runpilot2-wrapper.sh
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas       100 Nov 24 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:41:19] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 14:19 run_atlas
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas       105 Nov 24 14:19 job.xml
[2025-11-24 23:41:19] -rw-r--r-- 2 boincer umatlas 293493793 Nov 24 14:20 EVNT.47523640._000003.pool.root.1
[2025-11-24 23:41:19] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:20 start_atlas.sh
[2025-11-24 23:41:19] drwxrwx--x 2 boincer umatlas      4096 Nov 24 14:20 shared
[2025-11-24 23:41:19] -rw-r--r-- 2 boincer umatlas    589956 Nov 24 14:20 input.tar.gz
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas         0 Nov 24 14:20 boinc_lockfile
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas      2629 Nov 24 14:20 pandaJob.out
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas        57 Nov 24 14:20 setup.sh.local
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas    991801 Nov 24 14:20 agis_schedconf.cvmfs.json
[2025-11-24 23:41:19] drwx------ 5 boincer umatlas      4096 Nov 24 14:20 pilot3
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 23:38 init_data.xml
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas 334664529 Nov 24 23:39 HITS.47523642._000072.pool.root.1
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas       532 Nov 24 23:40 boinc_task_state.xml
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas      1054 Nov 24 23:40 memory_monitor_summary.json
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas        95 Nov 24 23:40 pilot_heartbeat.json
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas   1516227 Nov 24 23:40 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas    744394 Nov 24 23:40 log.47523642._000072.job.log.tgz.1
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas      7852 Nov 24 23:40 heartbeat.json
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 23:41 boinc_mmap_file
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas        29 Nov 24 23:41 wrapper_checkpoint.txt
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas       935 Nov 24 23:41 pilotlog.txt
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas   4602133 Nov 24 23:41 log.47523642._000072.job.log.1
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas       357 Nov 24 23:41 output.list
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas       620 Nov 24 23:41 runtime_log
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas   5365760 Nov 24 23:41 result.tar.gz
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 23:41 runtime_log.err
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas       665 Nov 24 23:41 PH6MDmvbig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDiHKDmQUjpZm.diag
[2025-11-24 23:41:19] -rw-r--r-- 1 boincer umatlas     21438 Nov 24 23:41 stderr.txt
[2025-11-24 23:41:19] HITS file was successfully produced:
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas 334664529 Nov 24 23:39 shared/HITS.pool.root.1
[2025-11-24 23:41:19]  *** Contents of shared directory: ***
[2025-11-24 23:41:19] total 619280
[2025-11-24 23:41:19] -rw-r--r-- 2 boincer umatlas 293493793 Nov 24 14:20 ATLAS.root_0
[2025-11-24 23:41:19] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 14:20 start_atlas.sh
[2025-11-24 23:41:19] -rw-r--r-- 2 boincer umatlas    589956 Nov 24 14:20 input.tar.gz
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas 334664529 Nov 24 23:39 HITS.pool.root.1
[2025-11-24 23:41:19] -rw------- 1 boincer umatlas   5365760 Nov 24 23:41 result.tar.gz
23:41:21 (29713): run_atlas exited; CPU time 259200.008641
23:41:21 (29713): called boinc_finish(0)

</stderr_txt>
]]>

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