Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:47:48 (477635): wrapper (7.7.26015): starting
23:47:48 (477635): wrapper: running run_atlas (--nthreads 11)
[2025-11-24 23:47:48] Arguments: --nthreads 11
[2025-11-24 23:47:48] Threads: 11
[2025-11-24 23:47:48] Checking for CVMFS
[2025-11-24 23:47:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:47:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:47:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:47:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:47:48] 2.13.3.0 12130 26453 353256 153270 1 369 27365366 40960001 15049 16776704 0 88738683 99.648 79209005 36291 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 23:47:48] CVMFS is ok
[2025-11-24 23:47:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:47:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:47:48] Further information can be found at the LHC@home message board.
[2025-11-24 23:47:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:47:48] Checking for apptainer binary...
[2025-11-24 23:47:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:47:48] Running /usr/bin/apptainer --version
[2025-11-24 23:47:48] apptainer version 1.4.4-1.el9
[2025-11-24 23:47:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:47:48] c6-5-7-4.aglt2.org
[2025-11-24 23:47:48] apptainer works
[2025-11-24 23:47:48] Set ATHENA_PROC_NUMBER=11
[2025-11-24 23:47:48] Set ATHENA_CORE_NUMBER=11
[2025-11-24 23:47:48] Starting ATLAS job with PandaID=6895417888
[2025-11-24 23:47:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:49:41]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:49:41] 2025-11-25 18:49:05,668 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 13:49:41] 2025-11-25 18:49:05,680 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2671.7118571428573
[2025-11-25 13:49:41] 2025-11-25 18:49:05,700 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895417888/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:49:41] 2025-11-25 18:49:05,701 | INFO     | extracted standard info from prmon json
[2025-11-25 13:49:41] 2025-11-25 18:49:05,701 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:49:41] 2025-11-25 18:49:05,701 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:49:41] 2025-11-25 18:49:05,727 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:49:41] 2025-11-25 18:49:05,728 | INFO     | sum of square deviations: 175407234250.69174
[2025-11-25 13:49:41] 2025-11-25 18:49:05,754 | INFO     | sum of deviations: 1378257315079.585
[2025-11-25 13:49:41] 2025-11-25 18:49:05,755 | INFO     | mean x: 1764071305.274486
[2025-11-25 13:49:41] 2025-11-25 18:49:05,755 | INFO     | mean y: 3404019.785973398
[2025-11-25 13:49:41] 2025-11-25 18:49:05,755 | INFO     | intersect: -13857735694.33596
[2025-11-25 13:49:41] 2025-11-25 18:49:05,760 | INFO     | chi2: 9.068858402369132
[2025-11-25 13:49:41] 2025-11-25 18:49:05,761 | INFO     | sum of square deviations: 172246131084.25455
[2025-11-25 13:49:41] 2025-11-25 18:49:05,847 | INFO     | sum of deviations: 1744731156926.5747
[2025-11-25 13:49:41] 2025-11-25 18:49:05,848 | INFO     | mean x: 1764071152.7944038
[2025-11-25 13:49:41] 2025-11-25 18:49:05,848 | INFO     | mean y: 3421691.559610706
[2025-11-25 13:49:41] 2025-11-25 18:49:05,848 | INFO     | intersect: -17865368068.4278
[2025-11-25 13:49:41] 2025-11-25 18:49:05,849 | INFO     | chi2: 5.104922850298286
[2025-11-25 13:49:41] 2025-11-25 18:49:05,849 | INFO     | current chi2=5.104922850298286 (change=43.70931131789768 %)
[2025-11-25 13:49:41] 2025-11-25 18:49:05,851 | INFO     | sum of square deviations: 169123261192.15695
[2025-11-25 13:49:41] 2025-11-25 18:49:05,922 | INFO     | sum of deviations: 2032702813751.0166
[2025-11-25 13:49:41] 2025-11-25 18:49:05,922 | INFO     | mean x: 1764071000.3145654
[2025-11-25 13:49:41] 2025-11-25 18:49:05,922 | INFO     | mean y: 3435740.5446756426
[2025-11-25 13:49:41] 2025-11-25 18:49:05,922 | INFO     | intersect: -21199041439.23123
[2025-11-25 13:49:41] 2025-11-25 18:49:05,966 | INFO     | chi2: 2.44365994526697
[2025-11-25 13:49:41] 2025-11-25 18:49:05,966 | INFO     | current chi2=2.44365994526697 (change=52.13130507693796 %)
[2025-11-25 13:49:41] 2025-11-25 18:49:05,967 | INFO     | sum of square deviations: 166038192686.54675
[2025-11-25 13:49:41] 2025-11-25 18:49:06,007 | INFO     | sum of deviations: 2132921774102.4492
[2025-11-25 13:49:41] 2025-11-25 18:49:06,007 | INFO     | mean x: 1764070847.8300493
[2025-11-25 13:49:41] 2025-11-25 18:49:06,008 | INFO     | mean y: 3440691.293103448
[2025-11-25 13:49:41] 2025-11-25 18:49:06,008 | INFO     | intersect: -22657761900.205276
[2025-11-25 13:49:41] 2025-11-25 18:49:06,009 | INFO     | chi2: 1.993662588474684
[2025-11-25 13:49:41] 2025-11-25 18:49:06,009 | INFO     | current chi2=1.993662588474684 (change=18.414892696664623 %)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,009 | INFO     | right removable region: 811
[2025-11-25 13:49:41] 2025-11-25 18:49:06,014 | INFO     | sum of square deviations: 172244579743.42703
[2025-11-25 13:49:41] 2025-11-25 18:49:06,031 | INFO     | PID=481343 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 13:49:41] 2025-11-25 18:49:06,032 | INFO     | .. there are 18 such processes running
[2025-11-25 13:49:41] 2025-11-25 18:49:06,042 | INFO     | sum of deviations: 1145111583823.4172
[2025-11-25 13:49:41] 2025-11-25 18:49:06,042 | INFO     | mean x: 1764071457.7919707
[2025-11-25 13:49:41] 2025-11-25 18:49:06,042 | INFO     | mean y: 3415242.48783455
[2025-11-25 13:49:41] 2025-11-25 18:49:06,042 | INFO     | intersect: -11724435143.393087
[2025-11-25 13:49:41] 2025-11-25 18:49:06,047 | INFO     | chi2: 7.297560004447163
[2025-11-25 13:49:41] 2025-11-25 18:49:06,048 | INFO     | current chi2=7.297560004447163 (change=19.531657892676304 %)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,048 | INFO     | left removable region: 10
[2025-11-25 13:49:41] 2025-11-25 18:49:06,049 | INFO     | sum of square deviations: 159381091503.8229
[2025-11-25 13:49:41] 2025-11-25 18:49:06,074 | INFO     | sum of deviations: 1843753033084.7117
[2025-11-25 13:49:41] 2025-11-25 18:49:06,074 | INFO     | mean x: 1764071122.3657928
[2025-11-25 13:49:41] 2025-11-25 18:49:06,074 | INFO     | mean y: 3455618.5880149812
[2025-11-25 13:49:41] 2025-11-25 18:49:06,074 | INFO     | intersect: -20403679580.138283
[2025-11-25 13:49:41] 2025-11-25 18:49:06,075 | INFO     | chi2: 0.1427116204012688
[2025-11-25 13:49:41] 2025-11-25 18:49:06,076 | INFO     | current memory leak: 11.57 B/s (using 801 data points, chi2=0.14)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,076 | INFO     | could have reported an average CPU frequency of 2792 MHz (31 samples)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | ..............................
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . Timing measurements:
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . get job = 0 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . initial setup = 2 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . payload setup = 6 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . stage-in = 0 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . payload execution = 50408 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,081 | INFO     | . stage-out = 5 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,082 | INFO     | . log creation = 1 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,082 | INFO     | ..............................
[2025-11-25 13:49:41] 2025-11-25 18:49:06,268 | INFO     | 
[2025-11-25 13:49:41] 2025-11-25 18:49:06,268 | INFO     | job summary report
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | --------------------------------------------------
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | PanDA job id: 6895417888
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | task id: 47556161
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | errors: (none)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | pilot state: finished 
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | transexitcode: 0
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | exeerrorcode: 0
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | exeerrordiag: 
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | exitcode: 0
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | exitmsg: OK
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | cpuconsumptiontime: 236725 s
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | nevents: 1000
[2025-11-25 13:49:41] 2025-11-25 18:49:06,269 | INFO     | neventsw: 0
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | pid: 488434
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | pgrp: 488434
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | corecount: 11
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | event service: False
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | sizes: {0: 2284307, 4: 2284569, 11: 2284597, 50416: 2333327, 50417: 2333326, 50423: 2342381, 50424: 2342565, 50449: 2342811}
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | --------------------------------------------------
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | 
[2025-11-25 13:49:41] 2025-11-25 18:49:06,270 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 13:49:41] 2025-11-25 18:49:06,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:49:41] 2025-11-25 18:49:06,370 | INFO     | job 6895417888 has completed (purged errors)
[2025-11-25 13:49:41] 2025-11-25 18:49:06,370 | INFO     | overall cleanup function is called
[2025-11-25 13:49:41] 2025-11-25 18:49:07,401 | INFO     | --- collectZombieJob: --- 10, [488434]
[2025-11-25 13:49:41] 2025-11-25 18:49:07,401 | INFO     | zombie collector waiting for pid 488434
[2025-11-25 13:49:41] 2025-11-25 18:49:07,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:49:41] 2025-11-25 18:49:07,401 | INFO     | collected zombie processes
[2025-11-25 13:49:41] 2025-11-25 18:49:07,401 | INFO     | will attempt to kill all subprocesses of pid=488434
[2025-11-25 13:49:41] 2025-11-25 18:49:08,170 | INFO     | process IDs to be killed: [488434] (in reverse order)
[2025-11-25 13:49:41] 2025-11-25 18:49:08,311 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:49:41] 2025-11-25 18:49:08,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:49:41] 2025-11-25 18:49:08,332 | INFO     | did not find any defunct processes belonging to 488434
[2025-11-25 13:49:41] 2025-11-25 18:49:08,345 | INFO     | did not find any defunct processes belonging to 488434
[2025-11-25 13:49:41] 2025-11-25 18:49:08,346 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:49:41] 2025-11-25 18:49:08,346 | INFO     | ready for new job
[2025-11-25 13:49:41] 2025-11-25 18:49:08,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:49:41] 2025-11-25 18:49:08,350 | INFO     | ***************************************
[2025-11-25 13:49:41] 2025-11-25 18:49:08,351 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:49:41] 2025-11-25 18:49:08,351 | INFO     | ***************************************
[2025-11-25 13:49:41] 2025-11-25 18:49:08,351 | INFO     | 
[2025-11-25 13:49:41] 2025-11-25 18:49:08,354 | INFO     | architecture information:
[2025-11-25 13:49:41] 2025-11-25 18:49:08,355 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:49:41] 2025-11-25 18:49:08,396 | INFO     | cat /etc/os-release:
[2025-11-25 13:49:41] NAME="CentOS Linux"
[2025-11-25 13:49:41] VERSION="7 (Core)"
[2025-11-25 13:49:41] ID="centos"
[2025-11-25 13:49:41] ID_LIKE="rhel fedora"
[2025-11-25 13:49:41] VERSION_ID="7"
[2025-11-25 13:49:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:49:41] ANSI_COLOR="0;31"
[2025-11-25 13:49:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:49:41] HOME_URL="https://www.centos.org/"
[2025-11-25 13:49:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:49:41] 
[2025-11-25 13:49:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:49:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:49:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:49:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:49:41] 
[2025-11-25 13:49:41] 2025-11-25 18:49:08,396 | INFO     | ***************************************
[2025-11-25 13:49:41] 2025-11-25 18:49:08,900 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 13:49:41] 2025-11-25 18:49:08,954 | INFO     | sufficient remaining disk space (70667730944 B)
[2025-11-25 13:49:41] 2025-11-25 18:49:08,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:49:41] 2025-11-25 18:49:08,955 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:49:41] 2025-11-25 18:49:08,955 | INFO     | update_server=False
[2025-11-25 13:49:41] 2025-11-25 18:49:08,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:49:41] 2025-11-25 18:49:08,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:49:41] 2025-11-25 18:49:09,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:49:41] 2025-11-25 18:49:09,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:49:41] 2025-11-25 18:49:09,690 | INFO     | aborting loop
[2025-11-25 13:49:41] 2025-11-25 18:49:09,773 | INFO     | all payload control threads have been joined
[2025-11-25 13:49:41] 2025-11-25 18:49:09,940 | INFO     | all data control threads have been joined
[2025-11-25 13:49:41] 2025-11-25 18:49:09,962 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,021 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,131 | INFO     | [job] validate thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,623 | INFO     | all job control threads have been joined
[2025-11-25 13:49:41] 2025-11-25 18:49:10,654 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,694 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,696 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,790 | INFO     | [payload] control thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,836 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,863 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,945 | INFO     | [data] control thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:10,963 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:11,041 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:11,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:49:41] 2025-11-25 18:49:11,629 | INFO     | [job] control thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:12,313 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:13,565 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:19,710 | INFO     | job.realtimelogging is not enabled
[2025-11-25 13:49:41] 2025-11-25 18:49:20,716 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:49:41] 2025-11-25 18:49:32,210 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:49:41] 2025-11-25 18:49:32,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139822371125056)>', '<ExcThread(monitor, started 139821645293312)>']
[2025-11-25 13:49:41] 2025-11-25 18:49:37,837 | INFO     | all workflow threads have been joined
[2025-11-25 13:49:41] 2025-11-25 18:49:37,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:49:41] 2025-11-25 18:49:37,837 | INFO     | traces error code: 0
[2025-11-25 13:49:41] 2025-11-25 18:49:37,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:49:41] 2025-11-25 18:49:40,122 | INFO     | PID=481343 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 13:49:41] 2025-11-25 18:49:40,122 | INFO     | .. there are 18 such processes running
[2025-11-25 13:49:41] 2025-11-25 18:49:40,122 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:49:41] 2025-11-25 18:49:40,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:49:41] 2025-11-25 18:49:40,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:49:41] 2025-11-25 18:49:40,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:49:41] 2025-11-25 18:49:40,127 | INFO     | [monitor] control thread has ended
[2025-11-25 13:49:41] 2025-11-25 18:49:40,766 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:49:41] 2025-11-25 18:49:40,797 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:49:41] 2025-11-25 18:49:40,804 [wrapper] pilotpid: 481343
[2025-11-25 13:49:41] 2025-11-25 18:49:40,808 [wrapper] Pilot exit status: 0
[2025-11-25 13:49:41] 2025-11-25 18:49:40,897 [wrapper] pandaids: 6895417888
[2025-11-25 13:49:41] 2025-11-25 18:49:40,997 [wrapper] cleanup supervisor_pilot 2550229 481344
[2025-11-25 13:49:41] 2025-11-25 18:49:41,009 [wrapper] Test setup, not cleaning
[2025-11-25 13:49:41] 2025-11-25 18:49:41,031 [wrapper] apfmon messages muted
[2025-11-25 13:49:41] 2025-11-25 18:49:41,061 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:49:41] 2025-11-25 18:49:41,093 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:49:41]  *** Error codes and diagnostics ***
[2025-11-25 13:49:41]     "exeErrorCode": 0,
[2025-11-25 13:49:41]     "exeErrorDiag": "",
[2025-11-25 13:49:41]     "pilotErrorCode": 0,
[2025-11-25 13:49:41]     "pilotErrorDiag": "",
[2025-11-25 13:49:41]  *** Listing of results directory ***
[2025-11-25 13:49:41] total 1324384
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 02:53 pilot3.tar.gz
[2025-11-25 13:49:41] -rwx------. 1 boincer umatlas     36292 Nov 24 03:27 runpilot2-wrapper.sh
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 03:27 queuedata.json
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:49:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:47 run_atlas
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:47 job.xml
[2025-11-25 13:49:41] -rw-r--r--. 2 boincer umatlas 409299353 Nov 24 23:47 EVNT.47483658._002029.pool.root.1
[2025-11-25 13:49:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:47 start_atlas.sh
[2025-11-25 13:49:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:47 shared
[2025-11-25 13:49:41] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 23:47 input.tar.gz
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:47 boinc_lockfile
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 23:47 pandaJob.out
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas        57 Nov 24 23:47 setup.sh.local
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas    991801 Nov 24 23:47 agis_schedconf.cvmfs.json
[2025-11-25 13:49:41] drwx------. 5 boincer umatlas      4096 Nov 24 23:48 pilot3
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas       533 Nov 25 13:31 boinc_task_state.xml
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas 925291137 Nov 25 13:45 HITS.47556161._000128.pool.root.1
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas      1056 Nov 25 13:48 memory_monitor_summary.json
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas   1516240 Nov 25 13:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas   2343953 Nov 25 13:48 log.47556161._000128.job.log.tgz.1
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas        95 Nov 25 13:48 pilot_heartbeat.json
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas      8623 Nov 25 13:49 heartbeat.json
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas      6840 Nov 25 13:49 init_data.xml
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 13:49 boinc_mmap_file
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas        29 Nov 25 13:49 wrapper_checkpoint.txt
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas       822 Nov 25 13:49 pilotlog.txt
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas   6487315 Nov 25 13:49 log.47556161._000128.job.log.1
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas       353 Nov 25 13:49 output.list
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas       620 Nov 25 13:49 runtime_log
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas   8847360 Nov 25 13:49 result.tar.gz
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas      9345 Nov 25 13:49 runtime_log.err
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas       660 Nov 25 13:49 9lcNDmF6gh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYyIKDmWJ0xfm.diag
[2025-11-25 13:49:41] -rw-r--r--. 1 boincer umatlas     21373 Nov 25 13:49 stderr.txt
[2025-11-25 13:49:41] HITS file was successfully produced:
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas 925291137 Nov 25 13:45 shared/HITS.pool.root.1
[2025-11-25 13:49:41]  *** Contents of shared directory: ***
[2025-11-25 13:49:41] total 1312560
[2025-11-25 13:49:41] -rw-r--r--. 2 boincer umatlas 409299353 Nov 24 23:47 ATLAS.root_0
[2025-11-25 13:49:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:47 start_atlas.sh
[2025-11-25 13:49:41] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 23:47 input.tar.gz
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas 925291137 Nov 25 13:45 HITS.pool.root.1
[2025-11-25 13:49:41] -rw-------. 1 boincer umatlas   8847360 Nov 25 13:49 result.tar.gz
13:49:43 (477635): run_atlas exited; CPU time 237331.847141
13:49:43 (477635): called boinc_finish(0)

</stderr_txt>
]]>

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