Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:04:16 (3854639): wrapper (7.7.26015): starting
18:04:16 (3854639): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 18:04:16] Arguments: --nthreads 9
[2025-11-24 18:04:16] Threads: 9
[2025-11-24 18:04:16] Checking for CVMFS
[2025-11-24 18:04:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 18:04:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 18:04:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 18:04:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 18:04:17] 2.13.2.0 6892 34470 178240 153261 3 213 32278837 40960000 20035 16776704 0 91654904 99.752 54844244 36276 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 18:04:17] CVMFS is ok
[2025-11-24 18:04:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 18:04:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 18:04:17] Further information can be found at the LHC@home message board.
[2025-11-24 18:04:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 18:04:17] Checking for apptainer binary...
[2025-11-24 18:04:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 18:04:17] Running /usr/bin/apptainer --version
[2025-11-24 18:04:17] apptainer version 1.4.4-1.el9
[2025-11-24 18:04:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:04:17] c-212-5.aglt2.org
[2025-11-24 18:04:17] apptainer works
[2025-11-24 18:04:17] Set ATHENA_PROC_NUMBER=9
[2025-11-24 18:04:17] Set ATHENA_CORE_NUMBER=9
[2025-11-24 18:04:17] Starting ATLAS job with PandaID=6895356915
[2025-11-24 18:04:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:51:47]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:51:47] 2025-11-25 17:50:59,937 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:51:47] 2025-11-25 17:51:00,870 | INFO     | PID=3858709 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:51:47] 2025-11-25 17:51:00,870 | INFO     | .. there are 18 such processes running
[2025-11-25 12:51:47] 2025-11-25 17:51:01,886 | INFO     | time since job start (67580s) is within the limit (172800.0s)
[2025-11-25 12:51:47] 2025-11-25 17:51:02,443 | INFO     | monitor loop #4588: job 0:6895356915 is in state 'finished'
[2025-11-25 12:51:47] 2025-11-25 17:51:02,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:51:47] 2025-11-25 17:51:03,893 | INFO     | time since job start (67582s) is within the limit (172800.0s)
[2025-11-25 12:51:47] 2025-11-25 17:51:04,977 | INFO     | monitor loop #4589: job 0:6895356915 is in state 'finished'
[2025-11-25 12:51:47] 2025-11-25 17:51:04,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:51:47] 2025-11-25 17:51:05,906 | INFO     | time since job start (67584s) is within the limit (172800.0s)
[2025-11-25 12:51:47] 2025-11-25 17:51:05,906 | INFO     | 67587s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 12:51:47] 2025-11-25 17:51:07,482 | INFO     | monitor loop #4590: job 0:6895356915 is in state 'finished'
[2025-11-25 12:51:47] 2025-11-25 17:51:07,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:51:47] 2025-11-25 17:51:07,925 | INFO     | time since job start (67586s) is within the limit (172800.0s)
[2025-11-25 12:51:47] 2025-11-25 17:51:09,938 | INFO     | time since job start (67588s) is within the limit (172800.0s)
[2025-11-25 12:51:47] 2025-11-25 17:51:10,017 | INFO     | monitor loop #4591: job 0:6895356915 is in state 'finished'
[2025-11-25 12:51:47] 2025-11-25 17:51:10,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:51:47] 2025-11-25 17:51:10,718 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:51:47] 2025-11-25 17:51:10,724 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3005.6596562499994
[2025-11-25 12:51:47] 2025-11-25 17:51:10,741 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356915/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:51:47] 2025-11-25 17:51:10,742 | INFO     | extracted standard info from prmon json
[2025-11-25 12:51:47] 2025-11-25 17:51:10,742 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:51:47] 2025-11-25 17:51:10,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:51:47] 2025-11-25 17:51:10,786 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:51:47] 2025-11-25 17:51:10,788 | INFO     | sum of square deviations: 420663839146.77637
[2025-11-25 12:51:47] 2025-11-25 17:51:10,871 | INFO     | sum of deviations: 1375826494722.3716
[2025-11-25 12:51:47] 2025-11-25 17:51:10,871 | INFO     | mean x: 1764059272.8093948
[2025-11-25 12:51:47] 2025-11-25 17:51:10,871 | INFO     | mean y: 3025413.5799457994
[2025-11-25 12:51:47] 2025-11-25 17:51:10,871 | INFO     | intersect: -5766520860.505696
[2025-11-25 12:51:47] 2025-11-25 17:51:10,872 | INFO     | chi2: 18.489511738956566
[2025-11-25 12:51:47] 2025-11-25 17:51:10,873 | INFO     | sum of square deviations: 414989950220.9918
[2025-11-25 12:51:47] 2025-11-25 17:51:10,960 | INFO     | sum of deviations: 1795140330335.3281
[2025-11-25 12:51:47] 2025-11-25 17:51:10,961 | INFO     | mean x: 1764059120.3130672
[2025-11-25 12:51:47] 2025-11-25 17:51:10,961 | INFO     | mean y: 3036681.0744101633
[2025-11-25 12:51:47] 2025-11-25 17:51:10,961 | INFO     | intersect: -7627831657.504604
[2025-11-25 12:51:47] 2025-11-25 17:51:10,970 | INFO     | chi2: 14.659899200497714
[2025-11-25 12:51:47] 2025-11-25 17:51:10,971 | INFO     | current chi2=14.659899200497714 (change=20.71235083179634 %)
[2025-11-25 12:51:47] 2025-11-25 17:51:10,971 | INFO     | right removable region: 1101
[2025-11-25 12:51:47] 2025-11-25 17:51:10,972 | INFO     | sum of square deviations: 414989403660.99194
[2025-11-25 12:51:47] 2025-11-25 17:51:11,095 | INFO     | sum of deviations: 1036448574150.5784
[2025-11-25 12:51:47] 2025-11-25 17:51:11,095 | INFO     | mean x: 1764059425.3130672
[2025-11-25 12:51:47] 2025-11-25 17:51:11,095 | INFO     | mean y: 3034525.1751361163
[2025-11-25 12:51:47] 2025-11-25 17:51:11,095 | INFO     | intersect: -4402757188.909727
[2025-11-25 12:51:47] 2025-11-25 17:51:11,096 | INFO     | chi2: 16.08277210145362
[2025-11-25 12:51:47] 2025-11-25 17:51:11,097 | INFO     | current chi2=16.08277210145362 (change=13.016783090231923 %)
[2025-11-25 12:51:47] 2025-11-25 17:51:11,097 | INFO     | left removable region: 10
[2025-11-25 12:51:47] 2025-11-25 17:51:11,110 | INFO     | sum of square deviations: 402686464720.78815
[2025-11-25 12:51:47] 2025-11-25 17:51:11,223 | INFO     | sum of deviations: 1431457076426.0022
[2025-11-25 12:51:47] 2025-11-25 17:51:11,245 | INFO     | mean x: 1764059394.8203483
[2025-11-25 12:51:47] 2025-11-25 17:51:11,245 | INFO     | mean y: 3050716.0
[2025-11-25 12:51:47] 2025-11-25 17:51:11,245 | INFO     | intersect: -6267771685.995175
[2025-11-25 12:51:47] 2025-11-25 17:51:11,246 | INFO     | chi2: 11.487991699988019
[2025-11-25 12:51:47] 2025-11-25 17:51:11,247 | INFO     | current memory leak: 3.55 B/s (using 1091 data points, chi2=11.49)
[2025-11-25 12:51:47] 2025-11-25 17:51:11,248 | INFO     | could have reported an average CPU frequency of 3004 MHz (41 samples)
[2025-11-25 12:51:47] 2025-11-25 17:51:11,248 | INFO     | ..............................
[2025-11-25 12:51:47] 2025-11-25 17:51:11,248 | INFO     | . Timing measurements:
[2025-11-25 12:51:47] 2025-11-25 17:51:11,248 | INFO     | . get job = 0 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,248 | INFO     | . initial setup = 2 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,248 | INFO     | . payload setup = 14 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,262 | INFO     | . stage-in = 0 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,262 | INFO     | . payload execution = 67502 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,262 | INFO     | . stage-out = 9 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,262 | INFO     | . log creation = 2 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,262 | INFO     | ..............................
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | 
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | job summary report
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | --------------------------------------------------
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | PanDA job id: 6895356915
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | task id: 47556137
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | errors: (none)
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:51:47] 2025-11-25 17:51:11,758 | INFO     | pilot state: finished 
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | transexitcode: 0
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | exeerrorcode: 0
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | exeerrordiag: 
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | exitcode: 0
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | exitmsg: OK
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | cpuconsumptiontime: 208993 s
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | nevents: 1000
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | neventsw: 0
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | pid: 3865926
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | pgrp: 3865926
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | corecount: 9
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | event service: False
[2025-11-25 12:51:47] 2025-11-25 17:51:11,759 | INFO     | sizes: {0: 2284310, 11: 2284310, 15: 2284600, 22: 2284628, 67521: 2341287, 67532: 2350286, 67533: 2350470, 67556: 2350812}
[2025-11-25 12:51:47] 2025-11-25 17:51:11,760 | INFO     | --------------------------------------------------
[2025-11-25 12:51:47] 2025-11-25 17:51:11,760 | INFO     | 
[2025-11-25 12:51:47] 2025-11-25 17:51:11,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:51:47] 2025-11-25 17:51:11,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | job 6895356915 has completed (purged errors)
[2025-11-25 12:51:47] 2025-11-25 17:51:11,904 | INFO     | overall cleanup function is called
[2025-11-25 12:51:47] 2025-11-25 17:51:12,930 | INFO     | --- collectZombieJob: --- 10, [3865926]
[2025-11-25 12:51:47] 2025-11-25 17:51:12,930 | INFO     | zombie collector waiting for pid 3865926
[2025-11-25 12:51:47] 2025-11-25 17:51:12,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:51:47] 2025-11-25 17:51:12,930 | INFO     | collected zombie processes
[2025-11-25 12:51:47] 2025-11-25 17:51:12,930 | INFO     | will attempt to kill all subprocesses of pid=3865926
[2025-11-25 12:51:47] 2025-11-25 17:51:15,650 | INFO     | process IDs to be killed: [3865926] (in reverse order)
[2025-11-25 12:51:47] 2025-11-25 17:51:15,914 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:51:47] 2025-11-25 17:51:15,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:51:47] 2025-11-25 17:51:15,947 | INFO     | did not find any defunct processes belonging to 3865926
[2025-11-25 12:51:47] 2025-11-25 17:51:16,036 | INFO     | did not find any defunct processes belonging to 3865926
[2025-11-25 12:51:47] 2025-11-25 17:51:16,063 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:51:47] 2025-11-25 17:51:16,063 | INFO     | ready for new job
[2025-11-25 12:51:47] 2025-11-25 17:51:16,063 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:51:47] 2025-11-25 17:51:16,083 | INFO     | ***************************************
[2025-11-25 12:51:47] 2025-11-25 17:51:16,083 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:51:47] 2025-11-25 17:51:16,083 | INFO     | ***************************************
[2025-11-25 12:51:47] 2025-11-25 17:51:16,083 | INFO     | 
[2025-11-25 12:51:47] 2025-11-25 17:51:16,113 | INFO     | architecture information:
[2025-11-25 12:51:47] 2025-11-25 17:51:16,121 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:51:47] 2025-11-25 17:51:16,187 | INFO     | cat /etc/os-release:
[2025-11-25 12:51:47] NAME="CentOS Linux"
[2025-11-25 12:51:47] VERSION="7 (Core)"
[2025-11-25 12:51:47] ID="centos"
[2025-11-25 12:51:47] ID_LIKE="rhel fedora"
[2025-11-25 12:51:47] VERSION_ID="7"
[2025-11-25 12:51:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:51:47] ANSI_COLOR="0;31"
[2025-11-25 12:51:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:51:47] HOME_URL="https://www.centos.org/"
[2025-11-25 12:51:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:51:47] 
[2025-11-25 12:51:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:51:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:51:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:51:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:51:47] 
[2025-11-25 12:51:47] 2025-11-25 17:51:16,187 | INFO     | ***************************************
[2025-11-25 12:51:47] 2025-11-25 17:51:16,690 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:51:47] 2025-11-25 17:51:16,901 | INFO     | sufficient remaining disk space (122176929792 B)
[2025-11-25 12:51:47] 2025-11-25 17:51:16,901 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:51:47] 2025-11-25 17:51:16,901 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:51:47] 2025-11-25 17:51:16,902 | INFO     | update_server=False
[2025-11-25 12:51:47] 2025-11-25 17:51:16,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:51:47] 2025-11-25 17:51:16,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:51:47] 2025-11-25 17:51:16,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:51:47] 2025-11-25 17:51:16,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:51:47] 2025-11-25 17:51:16,930 | INFO     | aborting loop
[2025-11-25 12:51:47] 2025-11-25 17:51:17,062 | INFO     | all job control threads have been joined
[2025-11-25 12:51:47] 2025-11-25 17:51:17,140 | INFO     | all data control threads have been joined
[2025-11-25 12:51:47] 2025-11-25 17:51:17,374 | INFO     | all payload control threads have been joined
[2025-11-25 12:51:47] 2025-11-25 17:51:17,908 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:17,918 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:17,944 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:51:47] 2025-11-25 17:51:18,070 | INFO     | [job] control thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,129 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,129 | INFO     | [job] validate thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,129 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,146 | INFO     | [data] control thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,380 | INFO     | [payload] control thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,934 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,934 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:18,935 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:19,025 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:19,051 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:22,059 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:51:47] 2025-11-25 17:51:36,051 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:51:47] 2025-11-25 17:51:36,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139983964768064)>', '<ExcThread(monitor, started 139983604127488)>']
[2025-11-25 12:51:47] 2025-11-25 17:51:41,864 | INFO     | all workflow threads have been joined
[2025-11-25 12:51:47] 2025-11-25 17:51:41,864 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:51:47] 2025-11-25 17:51:41,864 | INFO     | traces error code: 0
[2025-11-25 12:51:47] 2025-11-25 17:51:41,864 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:51:47] 2025-11-25 17:51:45,423 | INFO     | PID=3858709 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:51:47] 2025-11-25 17:51:45,427 | INFO     | .. there are 18 such processes running
[2025-11-25 12:51:47] 2025-11-25 17:51:45,428 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:51:47] 2025-11-25 17:51:45,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:51:47] 2025-11-25 17:51:45,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:51:47] 2025-11-25 17:51:45,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:51:47] 2025-11-25 17:51:45,428 | INFO     | [monitor] control thread has ended
[2025-11-25 12:51:47] 2025-11-25 17:51:45,679 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:51:47] 2025-11-25 17:51:45,707 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:51:47] 2025-11-25 17:51:45,722 [wrapper] pilotpid: 3858709
[2025-11-25 12:51:47] 2025-11-25 17:51:45,727 [wrapper] Pilot exit status: 0
[2025-11-25 12:51:47] 2025-11-25 17:51:45,828 [wrapper] pandaids: 6895356915
[2025-11-25 12:51:47] 2025-11-25 17:51:46,613 [wrapper] cleanup supervisor_pilot 2484207 3858710
[2025-11-25 12:51:47] 2025-11-25 17:51:46,629 [wrapper] Test setup, not cleaning
[2025-11-25 12:51:47] 2025-11-25 17:51:46,659 [wrapper] apfmon messages muted
[2025-11-25 12:51:47] 2025-11-25 17:51:46,687 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:51:47] 2025-11-25 17:51:46,705 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:51:47]  *** Error codes and diagnostics ***
[2025-11-25 12:51:47]     "exeErrorCode": 0,
[2025-11-25 12:51:47]     "exeErrorDiag": "",
[2025-11-25 12:51:47]     "pilotErrorCode": 0,
[2025-11-25 12:51:47]     "pilotErrorDiag": "",
[2025-11-25 12:51:47]  *** Listing of results directory ***
[2025-11-25 12:51:47] total 1321096
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:34 queuedata.json
[2025-11-25 12:51:47] -rwx------. 1 boincer umatlas     36292 Nov 23 06:34 runpilot2-wrapper.sh
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas       100 Nov 24 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:51:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 18:04 run_atlas
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas       105 Nov 24 18:04 job.xml
[2025-11-25 12:51:47] -rw-r--r--. 2 boincer umatlas 409740296 Nov 24 18:04 EVNT.47483658._000709.pool.root.1
[2025-11-25 12:51:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 18:04 start_atlas.sh
[2025-11-25 12:51:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 18:04 shared
[2025-11-25 12:51:47] -rw-r--r--. 2 boincer umatlas    590106 Nov 24 18:04 input.tar.gz
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas         0 Nov 24 18:04 boinc_lockfile
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 18:04 pandaJob.out
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas        57 Nov 24 18:04 setup.sh.local
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas    991801 Nov 24 18:04 agis_schedconf.cvmfs.json
[2025-11-25 12:51:47] drwx------. 5 boincer umatlas      4096 Nov 24 18:04 pilot3
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas       533 Nov 25 12:24 boinc_task_state.xml
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas 916080153 Nov 25 12:48 HITS.47556137._007046.pool.root.1
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas      6947 Nov 25 12:49 init_data.xml
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas      1074 Nov 25 12:50 memory_monitor_summary.json
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:50 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas   2384012 Nov 25 12:50 log.47556137._007046.job.log.tgz.1
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas        95 Nov 25 12:51 pilot_heartbeat.json
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas      8636 Nov 25 12:51 heartbeat.json
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:51 boinc_mmap_file
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:51 wrapper_checkpoint.txt
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas       823 Nov 25 12:51 pilotlog.txt
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas   9145777 Nov 25 12:51 log.47556137._007046.job.log.1
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas       353 Nov 25 12:51 output.list
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:51 runtime_log
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas  11550720 Nov 25 12:51 result.tar.gz
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 12:51 runtime_log.err
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas       666 Nov 25 12:51 hbwKDmvXNh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHWIKDmmpovQn.diag
[2025-11-25 12:51:47] -rw-r--r--. 1 boincer umatlas     21871 Nov 25 12:51 stderr.txt
[2025-11-25 12:51:47] HITS file was successfully produced:
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas 916080153 Nov 25 12:48 shared/HITS.pool.root.1
[2025-11-25 12:51:47]  *** Contents of shared directory: ***
[2025-11-25 12:51:47] total 1306636
[2025-11-25 12:51:47] -rw-r--r--. 2 boincer umatlas 409740296 Nov 24 18:04 ATLAS.root_0
[2025-11-25 12:51:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 18:04 start_atlas.sh
[2025-11-25 12:51:47] -rw-r--r--. 2 boincer umatlas    590106 Nov 24 18:04 input.tar.gz
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas 916080153 Nov 25 12:48 HITS.pool.root.1
[2025-11-25 12:51:47] -rw-------. 1 boincer umatlas  11550720 Nov 25 12:51 result.tar.gz
12:51:49 (3854639): run_atlas exited; CPU time 208885.289080
12:51:49 (3854639): called boinc_finish(0)

</stderr_txt>
]]>

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