Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:33:25 (10597): wrapper (7.7.26015): starting
01:33:25 (10597): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:33:25] Arguments: --nthreads 8
[2025-11-27 01:33:25] Threads: 8
[2025-11-27 01:33:25] Checking for CVMFS
[2025-11-27 01:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:33:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:33:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:33:28] 2.11.2.0 32354 286067 136008 153341 3 84 22244359 25165824 1324 130560 12 134062802 99.860 86536593 2728 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:33:28] CVMFS is ok
[2025-11-27 01:33:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:33:28] Checking for apptainer binary...
[2025-11-27 01:33:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:33:28] Running /usr/bin/apptainer --version
[2025-11-27 01:33:28] apptainer version 1.3.2-1.el7
[2025-11-27 01:33:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:33:31] cg-vwn392.simple-grid.lan
[2025-11-27 01:33:31] apptainer works
[2025-11-27 01:33:31] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:33:31] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:33:31] Starting ATLAS job with PandaID=6895371453
[2025-11-27 01:33:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:06:20]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:06:20] 2025-11-27 23:05:34,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:06:20] 2025-11-27 23:05:35,249 | INFO     | time since job start (80880s) is within the limit (172800.0s)
[2025-11-28 00:06:20] 2025-11-27 23:05:37,200 | INFO     | monitor loop #5469: job 0:6895371453 is in state 'finished'
[2025-11-28 00:06:20] 2025-11-27 23:05:37,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:06:20] 2025-11-27 23:05:37,256 | INFO     | time since job start (80882s) is within the limit (172800.0s)
[2025-11-28 00:06:20] 2025-11-27 23:05:38,474 | INFO     | PID=14384 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:06:20] 2025-11-27 23:05:38,474 | INFO     | .. there are 9 such processes running
[2025-11-28 00:06:20] 2025-11-27 23:05:39,478 | INFO     | time since job start (80884s) is within the limit (172800.0s)
[2025-11-28 00:06:20] 2025-11-27 23:05:39,716 | INFO     | monitor loop #5470: job 0:6895371453 is in state 'finished'
[2025-11-28 00:06:20] 2025-11-27 23:05:39,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:06:20] 2025-11-27 23:05:41,489 | INFO     | time since job start (80886s) is within the limit (172800.0s)
[2025-11-28 00:06:20] 2025-11-27 23:05:42,226 | INFO     | monitor loop #5471: job 0:6895371453 is in state 'finished'
[2025-11-28 00:06:20] 2025-11-27 23:05:42,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,049 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:06:20] 2025-11-27 23:05:43,050 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:06:20] 2025-11-27 23:05:43,052 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895371453/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,052 | INFO     | extracted standard info from prmon json
[2025-11-28 00:06:20] 2025-11-27 23:05:43,052 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:06:20] 2025-11-27 23:05:43,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:06:20] 2025-11-27 23:05:43,076 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:06:20] 2025-11-27 23:05:43,078 | INFO     | sum of square deviations: 706716797215.2482
[2025-11-28 00:06:20] 2025-11-27 23:05:43,144 | INFO     | sum of deviations: 2802026385241.433
[2025-11-28 00:06:20] 2025-11-27 23:05:43,145 | INFO     | mean x: 1764244505.5661094
[2025-11-28 00:06:20] 2025-11-27 23:05:43,145 | INFO     | mean y: 2835200.449088146
[2025-11-28 00:06:20] 2025-11-27 23:05:43,145 | INFO     | intersect: -6992130355.899237
[2025-11-28 00:06:20] 2025-11-27 23:05:43,147 | INFO     | chi2: 20.005038070854926
[2025-11-28 00:06:20] 2025-11-27 23:05:43,148 | INFO     | sum of square deviations: 698692497919.5443
[2025-11-28 00:06:20] 2025-11-27 23:05:43,227 | INFO     | sum of deviations: 3241158558458.817
[2025-11-28 00:06:20] 2025-11-27 23:05:43,227 | INFO     | mean x: 1764244353.0701754
[2025-11-28 00:06:20] 2025-11-27 23:05:43,227 | INFO     | mean y: 2843545.4042715486
[2025-11-28 00:06:20] 2025-11-27 23:05:43,227 | INFO     | intersect: -8181294256.551201
[2025-11-28 00:06:20] 2025-11-27 23:05:43,229 | INFO     | chi2: 16.74048544713701
[2025-11-28 00:06:20] 2025-11-27 23:05:43,229 | INFO     | current chi2=16.74048544713701 (change=16.318652392239123 %)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,229 | INFO     | right removable region: 1310
[2025-11-28 00:06:20] 2025-11-27 23:05:43,231 | INFO     | sum of square deviations: 698691642089.5447
[2025-11-28 00:06:20] 2025-11-27 23:05:43,350 | INFO     | sum of deviations: 2256682398849.968
[2025-11-28 00:06:20] 2025-11-27 23:05:43,351 | INFO     | mean x: 1764244658.0701754
[2025-11-28 00:06:20] 2025-11-27 23:05:43,351 | INFO     | mean y: 2845562.891685736
[2025-11-28 00:06:20] 2025-11-27 23:05:43,355 | INFO     | intersect: -5695433373.471766
[2025-11-28 00:06:20] 2025-11-27 23:05:43,357 | INFO     | chi2: 15.406028132840516
[2025-11-28 00:06:20] 2025-11-27 23:05:43,357 | INFO     | current chi2=15.406028132840516 (change=22.989258614381974 %)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,357 | INFO     | left removable region: 10
[2025-11-28 00:06:20] 2025-11-27 23:05:43,359 | INFO     | sum of square deviations: 681251642524.8385
[2025-11-28 00:06:20] 2025-11-27 23:05:43,409 | INFO     | sum of deviations: 2340417229798.2114
[2025-11-28 00:06:20] 2025-11-27 23:05:43,410 | INFO     | mean x: 1764244627.5792308
[2025-11-28 00:06:20] 2025-11-27 23:05:43,410 | INFO     | mean y: 2864988.2746153846
[2025-11-28 00:06:20] 2025-11-27 23:05:43,410 | INFO     | intersect: -6058138415.199474
[2025-11-28 00:06:20] 2025-11-27 23:05:43,411 | INFO     | chi2: 7.94666171766262
[2025-11-28 00:06:20] 2025-11-27 23:05:43,412 | INFO     | current memory leak: 3.44 B/s (using 1300 data points, chi2=7.95)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,413 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,413 | INFO     | ..............................
[2025-11-28 00:06:20] 2025-11-27 23:05:43,413 | INFO     | . Timing measurements:
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . get job = 0 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . initial setup = 9 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . payload setup = 170 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . stage-in = 0 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . payload execution = 80401 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . stage-out = 5 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | . log creation = 2 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,414 | INFO     | ..............................
[2025-11-28 00:06:20] 2025-11-27 23:05:43,518 | INFO     | time since job start (80888s) is within the limit (172800.0s)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,520 | INFO     | 
[2025-11-28 00:06:20] 2025-11-27 23:05:43,520 | INFO     | job summary report
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | --------------------------------------------------
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | PanDA job id: 6895371453
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | task id: 47556137
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | errors: (none)
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | pilot state: finished 
[2025-11-28 00:06:20] 2025-11-27 23:05:43,521 | INFO     | transexitcode: 0
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | exeerrorcode: 0
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | exeerrordiag: 
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | exitcode: 0
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | exitmsg: OK
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | cpuconsumptiontime: 305696 s
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | nevents: 1000
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | neventsw: 0
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | pid: 20997
[2025-11-28 00:06:20] 2025-11-27 23:05:43,522 | INFO     | pgrp: 20997
[2025-11-28 00:06:20] 2025-11-27 23:05:43,523 | INFO     | corecount: 8
[2025-11-28 00:06:20] 2025-11-27 23:05:43,523 | INFO     | event service: False
[2025-11-28 00:06:20] 2025-11-27 23:05:43,523 | INFO     | sizes: {0: 2283486, 1: 2284171, 2: 2284370, 13: 2284370, 24: 2284426, 34: 2284454, 45: 2284610, 56: 2284638, 67: 2284666, 78: 2284694, 88: 2284750, 99: 2285058, 10
[2025-11-28 00:06:20] 2025-11-27 23:05:43,523 | INFO     | --------------------------------------------------
[2025-11-28 00:06:20] 2025-11-27 23:05:43,523 | INFO     | 
[2025-11-28 00:06:20] 2025-11-27 23:05:43,523 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-28 00:06:20] 2025-11-27 23:05:44,179 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,179 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,179 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,179 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:06:20] 2025-11-27 23:05:44,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:06:20] 2025-11-27 23:05:44,181 | INFO     | job 6895371453 has completed (purged errors)
[2025-11-28 00:06:20] 2025-11-27 23:05:44,181 | INFO     | overall cleanup function is called
[2025-11-28 00:06:20] 2025-11-27 23:05:45,200 | INFO     | --- collectZombieJob: --- 10, [20997]
[2025-11-28 00:06:20] 2025-11-27 23:05:45,201 | INFO     | zombie collector waiting for pid 20997
[2025-11-28 00:06:20] 2025-11-27 23:05:45,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:06:20] 2025-11-27 23:05:45,201 | INFO     | collected zombie processes
[2025-11-28 00:06:20] 2025-11-27 23:05:45,201 | INFO     | will attempt to kill all subprocesses of pid=20997
[2025-11-28 00:06:20] 2025-11-27 23:05:45,306 | INFO     | process IDs to be killed: [20997] (in reverse order)
[2025-11-28 00:06:20] 2025-11-27 23:05:46,001 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:06:20] 2025-11-27 23:05:46,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:06:20] 2025-11-27 23:05:46,004 | INFO     | did not find any defunct processes belonging to 20997
[2025-11-28 00:06:20] 2025-11-27 23:05:46,007 | INFO     | did not find any defunct processes belonging to 20997
[2025-11-28 00:06:20] 2025-11-27 23:05:46,021 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:06:20] 2025-11-27 23:05:46,021 | INFO     | ready for new job
[2025-11-28 00:06:20] 2025-11-27 23:05:46,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:06:20] 2025-11-27 23:05:46,026 | INFO     | ***************************************
[2025-11-28 00:06:20] 2025-11-27 23:05:46,026 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:06:20] 2025-11-27 23:05:46,026 | INFO     | ***************************************
[2025-11-28 00:06:20] 2025-11-27 23:05:46,026 | INFO     | 
[2025-11-28 00:06:20] 2025-11-27 23:05:46,027 | INFO     | pilot is running in a VM
[2025-11-28 00:06:20] 2025-11-27 23:05:46,027 | INFO     | architecture information:
[2025-11-28 00:06:20] 2025-11-27 23:05:46,027 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:06:20] 2025-11-27 23:05:46,153 | INFO     | cat /etc/os-release:
[2025-11-28 00:06:20] NAME="CentOS Linux"
[2025-11-28 00:06:20] VERSION="7 (Core)"
[2025-11-28 00:06:20] ID="centos"
[2025-11-28 00:06:20] ID_LIKE="rhel fedora"
[2025-11-28 00:06:20] VERSION_ID="7"
[2025-11-28 00:06:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:06:20] ANSI_COLOR="0;31"
[2025-11-28 00:06:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:06:20] HOME_URL="https://www.centos.org/"
[2025-11-28 00:06:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:06:20] 
[2025-11-28 00:06:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:06:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:06:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:06:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:06:20] 
[2025-11-28 00:06:20] 2025-11-27 23:05:46,153 | INFO     | ***************************************
[2025-11-28 00:06:20] 2025-11-27 23:05:46,657 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-28 00:06:20] 2025-11-27 23:05:46,850 | INFO     | sufficient remaining disk space (495519268864 B)
[2025-11-28 00:06:20] 2025-11-27 23:05:46,850 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:06:20] 2025-11-27 23:05:46,851 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:06:20] 2025-11-27 23:05:46,851 | INFO     | update_server=False
[2025-11-28 00:06:20] 2025-11-27 23:05:46,851 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:06:20] 2025-11-27 23:05:46,852 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:06:20] 2025-11-27 23:05:47,001 | INFO     | all job control threads have been joined
[2025-11-28 00:06:20] 2025-11-27 23:05:47,061 | INFO     | all data control threads have been joined
[2025-11-28 00:06:20] 2025-11-27 23:05:47,264 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 00:06:20] 2025-11-27 23:05:47,264 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 00:06:20] 2025-11-27 23:05:47,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:06:20] 2025-11-27 23:05:47,265 | INFO     | will abort loop
[2025-11-28 00:06:20] 2025-11-27 23:05:47,856 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:47,910 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,007 | INFO     | [job] control thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,067 | INFO     | [data] control thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,165 | INFO     | all payload control threads have been joined
[2025-11-28 00:06:20] 2025-11-27 23:05:48,225 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,267 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,268 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,270 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:06:20] 2025-11-27 23:05:48,312 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,516 | INFO     | [job] validate thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,540 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,543 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:06:20] 2025-11-27 23:05:48,667 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:48,860 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:49,171 | INFO     | [payload] control thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:49,549 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:52,294 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:06:20] 2025-11-27 23:05:56,053 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:06:20] 2025-11-27 23:05:57,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943217874752)>', '<ExcThread(monitor, started 139942625789696)>']
[2025-11-28 00:06:20] 2025-11-27 23:06:02,687 | INFO     | all workflow threads have been joined
[2025-11-28 00:06:20] 2025-11-27 23:06:02,688 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:06:20] 2025-11-27 23:06:02,688 | INFO     | traces error code: 0
[2025-11-28 00:06:20] 2025-11-27 23:06:02,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:06:20] 2025-11-27 23:06:16,672 | INFO     | PID=14384 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:06:20] 2025-11-27 23:06:16,672 | INFO     | .. there are 9 such processes running
[2025-11-28 00:06:20] 2025-11-27 23:06:16,673 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:06:20] 2025-11-27 23:06:16,673 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:06:20] 2025-11-27 23:06:16,673 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:06:20] 2025-11-27 23:06:16,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:06:20] 2025-11-27 23:06:16,673 | INFO     | [monitor] control thread has ended
[2025-11-28 00:06:20] 2025-11-27 23:06:16,903 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:06:20] 2025-11-27 23:06:16,961 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:06:20] 2025-11-27 23:06:17,017 [wrapper] pilotpid: 14384
[2025-11-28 00:06:20] 2025-11-27 23:06:17,055 [wrapper] Pilot exit status: 0
[2025-11-28 00:06:20] 2025-11-27 23:06:17,463 [wrapper] pandaids: 6895371453
[2025-11-28 00:06:20] 2025-11-27 23:06:18,265 [wrapper] cleanup supervisor_pilot 17706 14385
[2025-11-28 00:06:20] 2025-11-27 23:06:18,342 [wrapper] Test setup, not cleaning
[2025-11-28 00:06:20] 2025-11-27 23:06:18,380 [wrapper] apfmon messages muted
[2025-11-28 00:06:20] 2025-11-27 23:06:18,436 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:06:20] 2025-11-27 23:06:18,495 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:06:20]  *** Error codes and diagnostics ***
[2025-11-28 00:06:20]     "exeErrorCode": 0,
[2025-11-28 00:06:20]     "exeErrorDiag": "",
[2025-11-28 00:06:20]     "pilotErrorCode": 0,
[2025-11-28 00:06:20]     "pilotErrorDiag": "",
[2025-11-28 00:06:20]  *** Listing of results directory ***
[2025-11-28 00:06:20] total 1317156
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc    576529 Nov 23 21:42 pilot3.tar.gz
[2025-11-28 00:06:20] -rwx------. 1 boinc boinc     36292 Nov 23 22:14 runpilot2-wrapper.sh
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc      5112 Nov 23 22:14 queuedata.json
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:06:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:33 run_atlas
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:33 job.xml
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc      6392 Nov 27 01:33 init_data.xml
[2025-11-28 00:06:20] -rw-r--r--. 2 boinc boinc 407661454 Nov 27 01:33 EVNT.47483658._000897.pool.root.1
[2025-11-28 00:06:20] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:33 start_atlas.sh
[2025-11-28 00:06:20] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:33 shared
[2025-11-28 00:06:20] -rw-r--r--. 2 boinc boinc    590100 Nov 27 01:33 input.tar.gz
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:33 boinc_lockfile
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc      2785 Nov 27 01:33 pandaJob.out
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc    991546 Nov 27 01:37 agis_schedconf.cvmfs.json
[2025-11-28 00:06:20] drwx------. 5 boinc boinc      4096 Nov 27 01:37 pilot3
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:44 boinc_task_state.xml
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc 910826995 Nov 28 00:02 HITS.47556137._008837.pool.root.1
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc      1031 Nov 28 00:03 memory_monitor_summary.json
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc   1516240 Nov 28 00:04 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc   2411285 Nov 28 00:04 log.47556137._008837.job.log.tgz.1
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc      8621 Nov 28 00:05 heartbeat.json
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:05 boinc_mmap_file
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:05 wrapper_checkpoint.txt
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc        95 Nov 28 00:06 pilot_heartbeat.json
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc       820 Nov 28 00:06 pilotlog.txt
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc  10779388 Nov 28 00:06 log.47556137._008837.job.log.1
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc       353 Nov 28 00:06 output.list
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:06 runtime_log
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc  13209600 Nov 28 00:06 result.tar.gz
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc       662 Nov 28 00:06 TnALDmcaWh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOlIKDm1k2pcn.diag
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:06 runtime_log.err
[2025-11-28 00:06:20] -rw-r--r--. 1 boinc boinc     21492 Nov 28 00:06 stderr.txt
[2025-11-28 00:06:20] HITS file was successfully produced:
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc 910826995 Nov 28 00:02 shared/HITS.pool.root.1
[2025-11-28 00:06:20]  *** Contents of shared directory: ***
[2025-11-28 00:06:20] total 1301084
[2025-11-28 00:06:20] -rw-r--r--. 2 boinc boinc 407661454 Nov 27 01:33 ATLAS.root_0
[2025-11-28 00:06:20] -rw-r--r--. 2 boinc boinc     15847 Nov 27 01:33 start_atlas.sh
[2025-11-28 00:06:20] -rw-r--r--. 2 boinc boinc    590100 Nov 27 01:33 input.tar.gz
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc 910826995 Nov 28 00:02 HITS.pool.root.1
[2025-11-28 00:06:20] -rw-------. 1 boinc boinc  13209600 Nov 28 00:06 result.tar.gz
00:06:21 (10597): run_atlas exited; CPU time 306220.920270
00:06:21 (10597): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN