Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:47:53 (14054): wrapper (7.7.26015): starting
23:47:53 (14054): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:47:53] Arguments: --nthreads 8
[2025-11-26 23:47:53] Threads: 8
[2025-11-26 23:47:53] Checking for CVMFS
[2025-11-26 23:47:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:47:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:47:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:47:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:47:55] 2.11.2.0 23903 83967 136248 153337 2 85 13325385 25165824 1288 130560 246 25186999 99.869 16560749 1649 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:47:55] CVMFS is ok
[2025-11-26 23:47:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:47:55] Checking for apptainer binary...
[2025-11-26 23:47:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:47:55] Running /usr/bin/apptainer --version
[2025-11-26 23:47:55] apptainer version 1.3.2-1.el7
[2025-11-26 23:47:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:48:09] cg-vwn444.simple-grid.lan
[2025-11-26 23:48:09] apptainer works
[2025-11-26 23:48:09] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:48:09] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:48:09] Starting ATLAS job with PandaID=6895357695
[2025-11-26 23:48:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:25:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:25:34] 2025-11-27 22:24:34,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:25:34] 2025-11-27 22:24:36,130 | INFO     | time since job start (84759s) is within the limit (172800.0s)
[2025-11-27 23:25:34] 2025-11-27 22:24:37,221 | INFO     | monitor loop #5710: job 0:6895357695 is in state 'finished'
[2025-11-27 23:25:34] 2025-11-27 22:24:37,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:25:34] 2025-11-27 22:24:38,137 | INFO     | time since job start (84761s) is within the limit (172800.0s)
[2025-11-27 23:25:34] 2025-11-27 22:24:39,726 | INFO     | monitor loop #5711: job 0:6895357695 is in state 'finished'
[2025-11-27 23:25:34] 2025-11-27 22:24:39,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:25:34] 2025-11-27 22:24:40,144 | INFO     | time since job start (84763s) is within the limit (172800.0s)
[2025-11-27 23:25:34] 2025-11-27 22:24:42,154 | INFO     | time since job start (84765s) is within the limit (172800.0s)
[2025-11-27 23:25:34] 2025-11-27 22:24:42,231 | INFO     | monitor loop #5712: job 0:6895357695 is in state 'finished'
[2025-11-27 23:25:34] 2025-11-27 22:24:42,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:25:34] 2025-11-27 22:24:44,160 | INFO     | time since job start (84767s) is within the limit (172800.0s)
[2025-11-27 23:25:34] 2025-11-27 22:24:44,160 | INFO     | 84782s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 23:25:34] 2025-11-27 22:24:44,735 | INFO     | monitor loop #5713: job 0:6895357695 is in state 'finished'
[2025-11-27 23:25:34] 2025-11-27 22:24:44,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:25:34] 2025-11-27 22:24:45,757 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:25:34] 2025-11-27 22:24:45,758 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:25:34] 2025-11-27 22:24:45,760 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6895357695/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:25:34] 2025-11-27 22:24:45,761 | INFO     | extracted standard info from prmon json
[2025-11-27 23:25:34] 2025-11-27 22:24:45,761 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:25:34] 2025-11-27 22:24:45,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:25:34] 2025-11-27 22:24:45,794 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:25:34] 2025-11-27 22:24:45,796 | INFO     | sum of square deviations: 814919355849.3127
[2025-11-27 23:25:34] 2025-11-27 22:24:45,860 | INFO     | sum of deviations: 3399099004229.0757
[2025-11-27 23:25:34] 2025-11-27 22:24:45,860 | INFO     | mean x: 1764240085.592029
[2025-11-27 23:25:34] 2025-11-27 22:24:45,861 | INFO     | mean y: 2838847.334057971
[2025-11-27 23:25:34] 2025-11-27 22:24:45,861 | INFO     | intersect: -7355958897.636626
[2025-11-27 23:25:34] 2025-11-27 22:24:45,862 | INFO     | chi2: 21.509812730083798
[2025-11-27 23:25:34] 2025-11-27 22:24:45,864 | INFO     | sum of square deviations: 806094031393.3293
[2025-11-27 23:25:34] 2025-11-27 22:24:45,921 | INFO     | sum of deviations: 3864981313213.46
[2025-11-27 23:25:34] 2025-11-27 22:24:45,921 | INFO     | mean x: 1764239933.096
[2025-11-27 23:25:34] 2025-11-27 22:24:45,921 | INFO     | mean y: 2846897.1934545455
[2025-11-27 23:25:34] 2025-11-27 22:24:45,921 | INFO     | intersect: -8456159258.273077
[2025-11-27 23:25:34] 2025-11-27 22:24:45,923 | INFO     | chi2: 18.18267705982024
[2025-11-27 23:25:34] 2025-11-27 22:24:45,923 | INFO     | current chi2=18.18267705982024 (change=15.467989944934294 %)
[2025-11-27 23:25:34] 2025-11-27 22:24:45,923 | INFO     | right removable region: 1374
[2025-11-27 23:25:34] 2025-11-27 22:24:45,925 | INFO     | sum of square deviations: 806093112123.3273
[2025-11-27 23:25:34] 2025-11-27 22:24:45,978 | INFO     | sum of deviations: 2819310186303.5747
[2025-11-27 23:25:34] 2025-11-27 22:24:45,978 | INFO     | mean x: 1764240238.096
[2025-11-27 23:25:34] 2025-11-27 22:24:45,978 | INFO     | mean y: 2848864.594181818
[2025-11-27 23:25:34] 2025-11-27 22:24:45,978 | INFO     | intersect: -6167580332.163071
[2025-11-27 23:25:34] 2025-11-27 22:24:45,980 | INFO     | chi2: 16.768909670884867
[2025-11-27 23:25:34] 2025-11-27 22:24:45,980 | INFO     | current chi2=16.768909670884867 (change=22.040652416133156 %)
[2025-11-27 23:25:34] 2025-11-27 22:24:45,980 | INFO     | left removable region: 10
[2025-11-27 23:25:34] 2025-11-27 22:24:45,982 | INFO     | sum of square deviations: 786901272102.0082
[2025-11-27 23:25:34] 2025-11-27 22:24:46,055 | INFO     | sum of deviations: 2887817782503.175
[2025-11-27 23:25:34] 2025-11-27 22:24:46,055 | INFO     | mean x: 1764240207.6048386
[2025-11-27 23:25:34] 2025-11-27 22:24:46,055 | INFO     | mean y: 2867927.9428152493
[2025-11-27 23:25:34] 2025-11-27 22:24:46,055 | INFO     | intersect: -6471647268.250555
[2025-11-27 23:25:34] 2025-11-27 22:24:46,057 | INFO     | chi2: 8.859513297545577
[2025-11-27 23:25:34] 2025-11-27 22:24:46,057 | INFO     | current memory leak: 3.67 B/s (using 1364 data points, chi2=8.86)
[2025-11-27 23:25:34] 2025-11-27 22:24:46,058 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 23:25:34] 2025-11-27 22:24:46,058 | INFO     | ..............................
[2025-11-27 23:25:34] 2025-11-27 22:24:46,058 | INFO     | . Timing measurements:
[2025-11-27 23:25:34] 2025-11-27 22:24:46,058 | INFO     | . get job = 0 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | . initial setup = 14 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | . payload setup = 158 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | . stage-in = 0 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | . payload execution = 84313 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | . stage-out = 5 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | . log creation = 1 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,059 | INFO     | ..............................
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | 
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | job summary report
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | --------------------------------------------------
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | PanDA job id: 6895357695
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | task id: 47556137
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | errors: (none)
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | pilot state: finished 
[2025-11-27 23:25:34] 2025-11-27 22:24:46,185 | INFO     | transexitcode: 0
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | exeerrorcode: 0
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | exeerrordiag: 
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | exitcode: 0
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | exitmsg: OK
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | cpuconsumptiontime: 318475 s
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | nevents: 1000
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | neventsw: 0
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | pid: 24471
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | pgrp: 24471
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | corecount: 8
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | event service: False
[2025-11-27 23:25:34] 2025-11-27 22:24:46,186 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 56: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 93: 2285321, 98
[2025-11-27 23:25:34] 2025-11-27 22:24:46,187 | INFO     | --------------------------------------------------
[2025-11-27 23:25:34] 2025-11-27 22:24:46,187 | INFO     | 
[2025-11-27 23:25:34] 2025-11-27 22:24:46,187 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-27 23:25:34] 2025-11-27 22:24:46,195 | INFO     | time since job start (84769s) is within the limit (172800.0s)
[2025-11-27 23:25:34] 2025-11-27 22:24:46,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,733 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,733 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:25:34] 2025-11-27 22:24:46,736 | INFO     | job 6895357695 has completed (purged errors)
[2025-11-27 23:25:34] 2025-11-27 22:24:46,736 | INFO     | overall cleanup function is called
[2025-11-27 23:25:34] 2025-11-27 22:24:47,761 | INFO     | --- collectZombieJob: --- 10, [24471]
[2025-11-27 23:25:34] 2025-11-27 22:24:47,761 | INFO     | zombie collector waiting for pid 24471
[2025-11-27 23:25:34] 2025-11-27 22:24:47,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:25:34] 2025-11-27 22:24:47,761 | INFO     | collected zombie processes
[2025-11-27 23:25:34] 2025-11-27 22:24:47,761 | INFO     | will attempt to kill all subprocesses of pid=24471
[2025-11-27 23:25:34] 2025-11-27 22:24:47,878 | INFO     | process IDs to be killed: [24471] (in reverse order)
[2025-11-27 23:25:34] 2025-11-27 22:24:48,636 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:25:34] 2025-11-27 22:24:48,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:25:34] 2025-11-27 22:24:48,639 | INFO     | did not find any defunct processes belonging to 24471
[2025-11-27 23:25:34] 2025-11-27 22:24:48,642 | INFO     | did not find any defunct processes belonging to 24471
[2025-11-27 23:25:34] 2025-11-27 22:24:48,685 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:25:34] 2025-11-27 22:24:48,685 | INFO     | ready for new job
[2025-11-27 23:25:34] 2025-11-27 22:24:48,685 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:25:34] 2025-11-27 22:24:48,690 | INFO     | ***************************************
[2025-11-27 23:25:34] 2025-11-27 22:24:48,691 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:25:34] 2025-11-27 22:24:48,691 | INFO     | ***************************************
[2025-11-27 23:25:34] 2025-11-27 22:24:48,691 | INFO     | 
[2025-11-27 23:25:34] 2025-11-27 22:24:48,691 | INFO     | pilot is running in a VM
[2025-11-27 23:25:34] 2025-11-27 22:24:48,691 | INFO     | architecture information:
[2025-11-27 23:25:34] 2025-11-27 22:24:48,701 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:25:34] 2025-11-27 22:24:48,963 | INFO     | cat /etc/os-release:
[2025-11-27 23:25:34] NAME="CentOS Linux"
[2025-11-27 23:25:34] VERSION="7 (Core)"
[2025-11-27 23:25:34] ID="centos"
[2025-11-27 23:25:34] ID_LIKE="rhel fedora"
[2025-11-27 23:25:34] VERSION_ID="7"
[2025-11-27 23:25:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:25:34] ANSI_COLOR="0;31"
[2025-11-27 23:25:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:25:34] HOME_URL="https://www.centos.org/"
[2025-11-27 23:25:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:25:34] 
[2025-11-27 23:25:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:25:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:25:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:25:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:25:34] 
[2025-11-27 23:25:34] 2025-11-27 22:24:48,963 | INFO     | ***************************************
[2025-11-27 23:25:34] 2025-11-27 22:24:49,467 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-27 23:25:34] 2025-11-27 22:24:49,762 | INFO     | sufficient remaining disk space (495194210304 B)
[2025-11-27 23:25:34] 2025-11-27 22:24:49,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:25:34] 2025-11-27 22:24:49,763 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:25:34] 2025-11-27 22:24:49,763 | INFO     | update_server=False
[2025-11-27 23:25:34] 2025-11-27 22:24:49,763 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:25:34] 2025-11-27 22:24:49,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:25:34] 2025-11-27 22:24:50,109 | INFO     | all data control threads have been joined
[2025-11-27 23:25:34] 2025-11-27 22:24:50,244 | INFO     | all job control threads have been joined
[2025-11-27 23:25:34] 2025-11-27 22:24:50,622 | INFO     | all payload control threads have been joined
[2025-11-27 23:25:34] 2025-11-27 22:24:50,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:25:34] 2025-11-27 22:24:50,756 | INFO     | aborting loop
[2025-11-27 23:25:34] 2025-11-27 22:24:50,769 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,115 | INFO     | [data] control thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,204 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:25:34] 2025-11-27 22:24:51,207 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,250 | INFO     | [job] control thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,342 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,628 | INFO     | [payload] control thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,644 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,762 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,772 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,871 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:51,918 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:52,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:25:34] 2025-11-27 22:24:52,129 | INFO     | [job] validate thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:52,158 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:52,210 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:24:56,093 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:25:34] 2025-11-27 22:25:19,369 | INFO     | PID=17857 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:25:34] 2025-11-27 22:25:19,369 | INFO     | .. there are 9 such processes running
[2025-11-27 23:25:34] 2025-11-27 22:25:19,370 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:25:34] 2025-11-27 22:25:19,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:25:34] 2025-11-27 22:25:19,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:25:34] 2025-11-27 22:25:24,163 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:25:34] 2025-11-27 22:25:25,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630225880896)>', '<ExcThread(monitor, started 140629543728896)>']
[2025-11-27 23:25:34] 2025-11-27 22:25:26,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:25:34] 2025-11-27 22:25:26,413 | INFO     | [monitor] control thread has ended
[2025-11-27 23:25:34] 2025-11-27 22:25:30,621 | INFO     | all workflow threads have been joined
[2025-11-27 23:25:34] 2025-11-27 22:25:30,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:25:34] 2025-11-27 22:25:30,621 | INFO     | traces error code: 0
[2025-11-27 23:25:34] 2025-11-27 22:25:30,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:25:34] 2025-11-27 22:25:30,910 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:25:34] 2025-11-27 22:25:30,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:25:34] 2025-11-27 22:25:31,060 [wrapper] pilotpid: 17857
[2025-11-27 23:25:34] 2025-11-27 22:25:31,170 [wrapper] Pilot exit status: 0
[2025-11-27 23:25:34] 2025-11-27 22:25:31,591 [wrapper] pandaids: 6895357695
[2025-11-27 23:25:34] 2025-11-27 22:25:32,231 [wrapper] cleanup supervisor_pilot 24577 17858
[2025-11-27 23:25:34] 2025-11-27 22:25:32,334 [wrapper] Test setup, not cleaning
[2025-11-27 23:25:34] 2025-11-27 22:25:32,455 [wrapper] apfmon messages muted
[2025-11-27 23:25:34] 2025-11-27 22:25:32,510 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:25:34] 2025-11-27 22:25:32,611 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:25:34]  *** Error codes and diagnostics ***
[2025-11-27 23:25:34]     "exeErrorCode": 0,
[2025-11-27 23:25:34]     "exeErrorDiag": "",
[2025-11-27 23:25:34]     "pilotErrorCode": 0,
[2025-11-27 23:25:34]     "pilotErrorDiag": "",
[2025-11-27 23:25:34]  *** Listing of results directory ***
[2025-11-27 23:25:34] total 1336384
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc    576529 Nov 23 12:59 pilot3.tar.gz
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc      5112 Nov 23 13:01 queuedata.json
[2025-11-27 23:25:34] -rwx------. 1 boinc boinc     36292 Nov 23 13:02 runpilot2-wrapper.sh
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:25:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:47 run_atlas
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:47 job.xml
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc      6392 Nov 26 23:47 init_data.xml
[2025-11-27 23:25:34] -rw-r--r--. 2 boinc boinc 409914684 Nov 26 23:47 EVNT.47483658._000722.pool.root.1
[2025-11-27 23:25:34] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:47 start_atlas.sh
[2025-11-27 23:25:34] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:47 shared
[2025-11-27 23:25:34] -rw-r--r--. 2 boinc boinc    590099 Nov 26 23:47 input.tar.gz
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:47 boinc_lockfile
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc      2786 Nov 26 23:48 pandaJob.out
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc    991546 Nov 26 23:51 agis_schedconf.cvmfs.json
[2025-11-27 23:25:34] drwx------. 5 boinc boinc      4096 Nov 26 23:51 pilot3
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:00 boinc_task_state.xml
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc 927046843 Nov 27 23:21 HITS.47556137._007176.pool.root.1
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc      1029 Nov 27 23:22 memory_monitor_summary.json
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc   1516240 Nov 27 23:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc   2471158 Nov 27 23:23 log.47556137._007176.job.log.tgz.1
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc      8628 Nov 27 23:24 heartbeat.json
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:25 boinc_mmap_file
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:25 wrapper_checkpoint.txt
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc        95 Nov 27 23:25 pilot_heartbeat.json
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc      4884 Nov 27 23:25 pilotlog.txt
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc  11322562 Nov 27 23:25 log.47556137._007176.job.log.1
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc       353 Nov 27 23:25 output.list
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:25 runtime_log
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc  13813760 Nov 27 23:25 result.tar.gz
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc       662 Nov 27 23:25 tePLDm0yNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcsKKDmqzlHwn.diag
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:25 runtime_log.err
[2025-11-27 23:25:34] -rw-r--r--. 1 boinc boinc     21451 Nov 27 23:25 stderr.txt
[2025-11-27 23:25:34] HITS file was successfully produced:
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc 927046843 Nov 27 23:21 shared/HITS.pool.root.1
[2025-11-27 23:25:34]  *** Contents of shared directory: ***
[2025-11-27 23:25:34] total 1319716
[2025-11-27 23:25:34] -rw-r--r--. 2 boinc boinc 409914684 Nov 26 23:47 ATLAS.root_0
[2025-11-27 23:25:34] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:47 start_atlas.sh
[2025-11-27 23:25:34] -rw-r--r--. 2 boinc boinc    590099 Nov 26 23:47 input.tar.gz
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc 927046843 Nov 27 23:21 HITS.pool.root.1
[2025-11-27 23:25:34] -rw-------. 1 boinc boinc  13813760 Nov 27 23:25 result.tar.gz
23:25:36 (14054): run_atlas exited; CPU time 319038.483781
23:25:36 (14054): called boinc_finish(0)

</stderr_txt>
]]>

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