Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:09:02 (1745177): wrapper (7.7.26015): starting
03:09:02 (1745177): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 03:09:02] Arguments: --nthreads 12
[2025-11-25 03:09:02] Threads: 12
[2025-11-25 03:09:02] Checking for CVMFS
[2025-11-25 03:09:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 03:09:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 03:09:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 03:09:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 03:09:02] 2.13.3.0 8990 4998 83884 153265 2 81 3600019 4097025 1044 130560 0 3823609 99.990 179190 10228 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-25 03:09:02] CVMFS is ok
[2025-11-25 03:09:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 03:09:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 03:09:02] Further information can be found at the LHC@home message board.
[2025-11-25 03:09:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:09:02] Checking for apptainer binary...
[2025-11-25 03:09:02] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-25 03:09:02] apptainer is not installed, using version from CVMFS
[2025-11-25 03:09:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:09:03] pckelar2.cern.ch
[2025-11-25 03:09:03] apptainer works
[2025-11-25 03:09:03] Set ATHENA_PROC_NUMBER=12
[2025-11-25 03:09:03] Set ATHENA_CORE_NUMBER=12
[2025-11-25 03:09:03] Starting ATLAS job with PandaID=6895371427
[2025-11-25 03:09:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:16:33]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:16:33] 2025-11-25 14:15:27,619 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 15:16:33] 2025-11-25 14:15:27,623 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2833.2916666666665
[2025-11-25 15:16:33] 2025-11-25 14:15:27,625 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6895371427/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,626 | INFO     | extracted standard info from prmon json
[2025-11-25 15:16:33] 2025-11-25 14:15:27,626 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:16:33] 2025-11-25 14:15:27,626 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:16:33] 2025-11-25 14:15:27,635 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:16:33] 2025-11-25 14:15:27,636 | INFO     | sum of square deviations: 112868068490.14177
[2025-11-25 15:16:33] 2025-11-25 14:15:27,645 | INFO     | sum of deviations: 1778782087494.8926
[2025-11-25 15:16:33] 2025-11-25 14:15:27,646 | INFO     | mean x: 1764058332.477591
[2025-11-25 15:16:33] 2025-11-25 14:15:27,646 | INFO     | mean y: 3568886.868347339
[2025-11-25 15:16:33] 2025-11-25 14:15:27,646 | INFO     | intersect: -27797698602.539608
[2025-11-25 15:16:33] 2025-11-25 14:15:27,646 | INFO     | chi2: 5.857103619151064
[2025-11-25 15:16:33] 2025-11-25 14:15:27,647 | INFO     | sum of square deviations: 110513660482.8294
[2025-11-25 15:16:33] 2025-11-25 14:15:27,656 | INFO     | sum of deviations: 2035525499210.4656
[2025-11-25 15:16:33] 2025-11-25 14:15:27,657 | INFO     | mean x: 1764058179.9844851
[2025-11-25 15:16:33] 2025-11-25 14:15:27,657 | INFO     | mean y: 3585504.4062059238
[2025-11-25 15:16:33] 2025-11-25 14:15:27,657 | INFO     | intersect: -32488193265.396896
[2025-11-25 15:16:33] 2025-11-25 14:15:27,657 | INFO     | chi2: 3.2990440679879662
[2025-11-25 15:16:33] 2025-11-25 14:15:27,657 | INFO     | current chi2=3.2990440679879662 (change=43.674480041619375 %)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,658 | INFO     | sum of square deviations: 108192229837.94875
[2025-11-25 15:16:33] 2025-11-25 14:15:27,667 | INFO     | sum of deviations: 2136821503038.5488
[2025-11-25 15:16:33] 2025-11-25 14:15:27,667 | INFO     | mean x: 1764058027.4914773
[2025-11-25 15:16:33] 2025-11-25 14:15:27,667 | INFO     | mean y: 3592153.258522727
[2025-11-25 15:16:33] 2025-11-25 14:15:27,667 | INFO     | intersect: -34836960919.70718
[2025-11-25 15:16:33] 2025-11-25 14:15:27,668 | INFO     | chi2: 2.718798000882015
[2025-11-25 15:16:33] 2025-11-25 14:15:27,668 | INFO     | current chi2=2.718798000882015 (change=17.588309072204485 %)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,668 | INFO     | right removable region: 703
[2025-11-25 15:16:33] 2025-11-25 14:15:27,669 | INFO     | sum of square deviations: 110513278013.797
[2025-11-25 15:16:33] 2025-11-25 14:15:27,678 | INFO     | sum of deviations: 1521323346189.7354
[2025-11-25 15:16:33] 2025-11-25 14:15:27,678 | INFO     | mean x: 1764058484.9830747
[2025-11-25 15:16:33] 2025-11-25 14:15:27,678 | INFO     | mean y: 3585535.478138223
[2025-11-25 15:16:33] 2025-11-25 14:15:27,678 | INFO     | intersect: -24280404637.30273
[2025-11-25 15:16:33] 2025-11-25 14:15:27,679 | INFO     | chi2: 3.4877876609116862
[2025-11-25 15:16:33] 2025-11-25 14:15:27,679 | INFO     | current chi2=3.4877876609116862 (change=40.45200686722338 %)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,680 | INFO     | sum of square deviations: 108191638143.7957
[2025-11-25 15:16:33] 2025-11-25 14:15:27,689 | INFO     | sum of deviations: 1430004579751.818
[2025-11-25 15:16:33] 2025-11-25 14:15:27,689 | INFO     | mean x: 1764058637.4829545
[2025-11-25 15:16:33] 2025-11-25 14:15:27,689 | INFO     | mean y: 3591533.8181818184
[2025-11-25 15:16:33] 2025-11-25 14:15:27,689 | INFO     | intersect: -23312553538.30482
[2025-11-25 15:16:33] 2025-11-25 14:15:27,690 | INFO     | chi2: 3.3607425244258815
[2025-11-25 15:16:33] 2025-11-25 14:15:27,690 | INFO     | current chi2=3.3607425244258815 (change=3.6425708453993413 %)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,690 | INFO     | left removable region: 20
[2025-11-25 15:16:33] 2025-11-25 14:15:27,690 | INFO     | sum of square deviations: 98796064576.99854
[2025-11-25 15:16:33] 2025-11-25 14:15:27,699 | INFO     | sum of deviations: 1659629670189.48
[2025-11-25 15:16:33] 2025-11-25 14:15:27,699 | INFO     | mean x: 1764058606.9985359
[2025-11-25 15:16:33] 2025-11-25 14:15:27,699 | INFO     | mean y: 3624684.4816983896
[2025-11-25 15:16:33] 2025-11-25 14:15:27,699 | INFO     | intersect: -29629984879.451378
[2025-11-25 15:16:33] 2025-11-25 14:15:27,700 | INFO     | chi2: 0.12257718942142154
[2025-11-25 15:16:33] 2025-11-25 14:15:27,700 | INFO     | current memory leak: 16.80 B/s (using 683 data points, chi2=0.12)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | could have reported an average CPU frequency of 2802 MHz (27 samples)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | ..............................
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . Timing measurements:
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . get job = 0 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . initial setup = 1 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . payload setup = 9 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . stage-in = 0 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . payload execution = 43531 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . stage-out = 2 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,701 | INFO     | . log creation = 0 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,702 | INFO     | ..............................
[2025-11-25 15:16:33] 2025-11-25 14:15:27,771 | INFO     | 
[2025-11-25 15:16:33] 2025-11-25 14:15:27,771 | INFO     | job summary report
[2025-11-25 15:16:33] 2025-11-25 14:15:27,771 | INFO     | --------------------------------------------------
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | PanDA job id: 6895371427
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | task id: 47556137
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | errors: (none)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | pilot state: finished 
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | transexitcode: 0
[2025-11-25 15:16:33] 2025-11-25 14:15:27,772 | INFO     | exeerrorcode: 0
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | exeerrordiag: 
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | exitcode: 0
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | exitmsg: OK
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | cpuconsumptiontime: 501155 s
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | nevents: 1000
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | neventsw: 0
[2025-11-25 15:16:33] 2025-11-25 14:15:27,773 | INFO     | pid: 1756561
[2025-11-25 15:16:33] 2025-11-25 14:15:27,774 | INFO     | pgrp: 1756561
[2025-11-25 15:16:33] 2025-11-25 14:15:27,774 | INFO     | corecount: 12
[2025-11-25 15:16:33] 2025-11-25 14:15:27,774 | INFO     | event service: False
[2025-11-25 15:16:33] 2025-11-25 14:15:27,774 | INFO     | sizes: {0: 2284132, 1: 2284331, 6: 2284593, 12: 2284621, 43544: 2330009, 43545: 2330008, 43548: 2339191, 43550: 2339247, 43557: 2339493}
[2025-11-25 15:16:33] 2025-11-25 14:15:27,774 | INFO     | --------------------------------------------------
[2025-11-25 15:16:33] 2025-11-25 14:15:27,774 | INFO     | 
[2025-11-25 15:16:33] 2025-11-25 14:15:27,775 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-25 15:16:33] 2025-11-25 14:15:27,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,790 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,790 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,790 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,793 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:16:33] 2025-11-25 14:15:27,793 | INFO     | job 6895371427 has completed (purged errors)
[2025-11-25 15:16:33] 2025-11-25 14:15:27,793 | INFO     | overall cleanup function is called
[2025-11-25 15:16:33] 2025-11-25 14:15:28,815 | INFO     | --- collectZombieJob: --- 10, [1756561]
[2025-11-25 15:16:33] 2025-11-25 14:15:28,815 | INFO     | zombie collector waiting for pid 1756561
[2025-11-25 15:16:33] 2025-11-25 14:15:28,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:16:33] 2025-11-25 14:15:28,816 | INFO     | collected zombie processes
[2025-11-25 15:16:33] 2025-11-25 14:15:28,816 | INFO     | will attempt to kill all subprocesses of pid=1756561
[2025-11-25 15:16:33] 2025-11-25 14:15:29,012 | INFO     | process IDs to be killed: [1756561] (in reverse order)
[2025-11-25 15:16:33] 2025-11-25 14:15:29,075 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:16:33] 2025-11-25 14:15:29,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:16:33] 2025-11-25 14:15:29,082 | INFO     | did not find any defunct processes belonging to 1756561
[2025-11-25 15:16:33] 2025-11-25 14:15:29,088 | INFO     | did not find any defunct processes belonging to 1756561
[2025-11-25 15:16:33] 2025-11-25 14:15:29,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:16:33] 2025-11-25 14:15:29,090 | INFO     | ready for new job
[2025-11-25 15:16:33] 2025-11-25 14:15:29,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:16:33] 2025-11-25 14:15:29,093 | INFO     | ***************************************
[2025-11-25 15:16:33] 2025-11-25 14:15:29,094 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:16:33] 2025-11-25 14:15:29,094 | INFO     | ***************************************
[2025-11-25 15:16:33] 2025-11-25 14:15:29,094 | INFO     | 
[2025-11-25 15:16:33] 2025-11-25 14:15:29,095 | INFO     | architecture information:
[2025-11-25 15:16:33] 2025-11-25 14:15:29,096 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:16:33] 2025-11-25 14:15:29,111 | INFO     | cat /etc/os-release:
[2025-11-25 15:16:33] NAME="CentOS Linux"
[2025-11-25 15:16:33] VERSION="7 (Core)"
[2025-11-25 15:16:33] ID="centos"
[2025-11-25 15:16:33] ID_LIKE="rhel fedora"
[2025-11-25 15:16:33] VERSION_ID="7"
[2025-11-25 15:16:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:16:33] ANSI_COLOR="0;31"
[2025-11-25 15:16:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:16:33] HOME_URL="https://www.centos.org/"
[2025-11-25 15:16:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:16:33] 
[2025-11-25 15:16:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:16:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:16:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:16:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:16:33] 
[2025-11-25 15:16:33] 2025-11-25 14:15:29,111 | INFO     | ***************************************
[2025-11-25 15:16:33] 2025-11-25 14:15:29,612 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-25 15:16:33] 2025-11-25 14:15:29,629 | INFO     | sufficient remaining disk space (229925453824 B)
[2025-11-25 15:16:33] 2025-11-25 14:15:29,630 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:16:33] 2025-11-25 14:15:29,630 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:16:33] 2025-11-25 14:15:29,630 | INFO     | update_server=False
[2025-11-25 15:16:33] 2025-11-25 14:15:29,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:16:33] 2025-11-25 14:15:29,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:16:33] 2025-11-25 14:15:29,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:16:33] 2025-11-25 14:15:29,727 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:16:33] 2025-11-25 14:15:29,727 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:16:33] 2025-11-25 14:15:29,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:16:33] 2025-11-25 14:15:29,728 | INFO     | will abort loop
[2025-11-25 15:16:33] 2025-11-25 14:15:30,112 | INFO     | all data control threads have been joined
[2025-11-25 15:16:33] 2025-11-25 14:15:30,635 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:30,637 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:30,718 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:30,733 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:30,916 | INFO     | all payload control threads have been joined
[2025-11-25 15:16:33] 2025-11-25 14:15:31,031 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,065 | INFO     | all job control threads have been joined
[2025-11-25 15:16:33] 2025-11-25 14:15:31,117 | INFO     | [data] control thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,187 | INFO     | [job] validate thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:16:33] 2025-11-25 14:15:31,351 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,537 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,637 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,777 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,790 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:31,922 | INFO     | [payload] control thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:32,070 | INFO     | [job] control thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:35,341 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:15:39,912 | INFO     | job.realtimelogging is not enabled
[2025-11-25 15:16:33] 2025-11-25 14:15:40,918 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:16:33] 2025-11-25 14:16:00,564 | INFO     | PID=1749029 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:16:33] 2025-11-25 14:16:00,564 | INFO     | .. there are 2 such processes running
[2025-11-25 15:16:33] 2025-11-25 14:16:00,565 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:16:33] 2025-11-25 14:16:00,565 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:16:33] 2025-11-25 14:16:00,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:16:33] 2025-11-25 14:16:26,267 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:16:33] 2025-11-25 14:16:27,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145085577024)>', '<ExcThread(monitor, started 140144531183360)>']
[2025-11-25 15:16:33] 2025-11-25 14:16:28,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:16:33] 2025-11-25 14:16:28,704 | INFO     | [monitor] control thread has ended
[2025-11-25 15:16:33] 2025-11-25 14:16:32,896 | INFO     | all workflow threads have been joined
[2025-11-25 15:16:33] 2025-11-25 14:16:32,896 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:16:33] 2025-11-25 14:16:32,897 | INFO     | traces error code: 0
[2025-11-25 15:16:33] 2025-11-25 14:16:32,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:16:33] 2025-11-25 14:16:33,034 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:16:33] 2025-11-25 14:16:33,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:16:33] 2025-11-25 14:16:33,040 [wrapper] pilotpid: 1749029
[2025-11-25 15:16:33] 2025-11-25 14:16:33,042 [wrapper] Pilot exit status: 0
[2025-11-25 15:16:33] 2025-11-25 14:16:33,052 [wrapper] pandaids: 6895371427
[2025-11-25 15:16:33] 2025-11-25 14:16:33,101 [wrapper] cleanup supervisor_pilot 2000608 1749030
[2025-11-25 15:16:33] 2025-11-25 14:16:33,103 [wrapper] Test setup, not cleaning
[2025-11-25 15:16:33] 2025-11-25 14:16:33,106 [wrapper] apfmon messages muted
[2025-11-25 15:16:33] 2025-11-25 14:16:33,109 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:16:33] 2025-11-25 14:16:33,111 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:16:33]  *** Error codes and diagnostics ***
[2025-11-25 15:16:33]     "exeErrorCode": 0,
[2025-11-25 15:16:33]     "exeErrorDiag": "",
[2025-11-25 15:16:33]     "pilotErrorCode": 0,
[2025-11-25 15:16:33]     "pilotErrorDiag": "",
[2025-11-25 15:16:33]  *** Listing of results directory ***
[2025-11-25 15:16:33] total 1313404
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc    576529 Nov 23 21:42 pilot3.tar.gz
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc      5112 Nov 23 21:43 queuedata.json
[2025-11-25 15:16:33] -rwx------ 1 boinc boinc     36292 Nov 23 21:44 runpilot2-wrapper.sh
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc       100 Nov 25 03:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:16:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 03:09 run_atlas
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc       105 Nov 25 03:09 job.xml
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc      6295 Nov 25 03:09 init_data.xml
[2025-11-25 15:16:33] -rw-r--r-- 2 boinc boinc 408735907 Nov 25 03:09 EVNT.47483658._000895.pool.root.1
[2025-11-25 15:16:33] -rw-r--r-- 2 boinc boinc     15847 Nov 25 03:09 start_atlas.sh
[2025-11-25 15:16:33] drwxrwx--x 2 boinc boinc        68 Nov 25 03:09 shared
[2025-11-25 15:16:33] -rw-r--r-- 2 boinc boinc    590100 Nov 25 03:09 input.tar.gz
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc         0 Nov 25 03:09 boinc_lockfile
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc      2782 Nov 25 03:09 pandaJob.out
[2025-11-25 15:16:33] -rw------- 1 boinc boinc    991801 Nov 25 03:09 agis_schedconf.cvmfs.json
[2025-11-25 15:16:33] drwx------ 5 boinc boinc      4096 Nov 25 03:09 pilot3
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc       532 Nov 25 15:03 boinc_task_state.xml
[2025-11-25 15:16:33] -rw------- 1 boinc boinc 915039143 Nov 25 15:14 HITS.47556137._008811.pool.root.1
[2025-11-25 15:16:33] -rw------- 1 boinc boinc        95 Nov 25 15:15 pilot_heartbeat.json
[2025-11-25 15:16:33] -rw------- 1 boinc boinc      1034 Nov 25 15:15 memory_monitor_summary.json
[2025-11-25 15:16:33] -rw------- 1 boinc boinc   1516240 Nov 25 15:15 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:16:33] -rw------- 1 boinc boinc   2418825 Nov 25 15:15 log.47556137._008811.job.log.tgz.1
[2025-11-25 15:16:33] -rw------- 1 boinc boinc      8609 Nov 25 15:15 heartbeat.json
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc        29 Nov 25 15:16 wrapper_checkpoint.txt
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc      8192 Nov 25 15:16 boinc_mmap_file
[2025-11-25 15:16:33] -rw------- 1 boinc boinc      5082 Nov 25 15:16 pilotlog.txt
[2025-11-25 15:16:33] -rw------- 1 boinc boinc   6202008 Nov 25 15:16 log.47556137._008811.job.log.1
[2025-11-25 15:16:33] -rw------- 1 boinc boinc       353 Nov 25 15:16 output.list
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc       620 Nov 25 15:16 runtime_log
[2025-11-25 15:16:33] -rw------- 1 boinc boinc   8642560 Nov 25 15:16 result.tar.gz
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc      8842 Nov 25 15:16 runtime_log.err
[2025-11-25 15:16:33] -rw------- 1 boinc boinc       666 Nov 25 15:16 669LDml7Vh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsBLKDmqYhOSn.diag
[2025-11-25 15:16:33] -rw-r--r-- 1 boinc boinc     21401 Nov 25 15:16 stderr.txt
[2025-11-25 15:16:33] HITS file was successfully produced:
[2025-11-25 15:16:33] -rw------- 1 boinc boinc 915039143 Nov 25 15:14 shared/HITS.pool.root.1
[2025-11-25 15:16:33]  *** Contents of shared directory: ***
[2025-11-25 15:16:33] total 1301792
[2025-11-25 15:16:33] -rw-r--r-- 2 boinc boinc 408735907 Nov 25 03:09 ATLAS.root_0
[2025-11-25 15:16:33] -rw-r--r-- 2 boinc boinc     15847 Nov 25 03:09 start_atlas.sh
[2025-11-25 15:16:33] -rw-r--r-- 2 boinc boinc    590100 Nov 25 03:09 input.tar.gz
[2025-11-25 15:16:33] -rw------- 1 boinc boinc 915039143 Nov 25 15:14 HITS.pool.root.1
[2025-11-25 15:16:33] -rw------- 1 boinc boinc   8642560 Nov 25 15:16 result.tar.gz
15:16:35 (1745177): run_atlas exited; CPU time 499695.768835
15:16:35 (1745177): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN