Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:23:07 (6459): wrapper (7.7.26015): starting
23:23:07 (6459): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 23:23:07] Arguments: --nthreads 8
[2025-11-26 23:23:07] Threads: 8
[2025-11-26 23:23:07] Checking for CVMFS
[2025-11-26 23:23:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:23:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:23:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:23:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:23:10] 2.11.2.0 6427 172770 132120 153337 3 75 24859927 25165825 1288 130560 10 55797001 99.884 32205927 2430 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 23:23:10] CVMFS is ok
[2025-11-26 23:23:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:23:10] Checking for apptainer binary...
[2025-11-26 23:23:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:23:10] Running /usr/bin/apptainer --version
[2025-11-26 23:23:10] apptainer version 1.3.2-1.el7
[2025-11-26 23:23:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:23:22] cg-vwn308.simple-grid.lan
[2025-11-26 23:23:22] apptainer works
[2025-11-26 23:23:22] Set ATHENA_PROC_NUMBER=8
[2025-11-26 23:23:22] Set ATHENA_CORE_NUMBER=8
[2025-11-26 23:23:22] Starting ATLAS job with PandaID=6895356889
[2025-11-26 23:23:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:05:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:05:38] 2025-11-27 22:04:35,063 | INFO     | time since job start (85055s) is within the limit (172800.0s)
[2025-11-27 23:05:38] 2025-11-27 22:04:35,456 | INFO     | monitor loop #5728: job 0:6895356889 is in state 'finished'
[2025-11-27 23:05:38] 2025-11-27 22:04:35,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:05:38] 2025-11-27 22:04:36,284 | INFO     | PID=10217 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:05:38] 2025-11-27 22:04:36,284 | INFO     | .. there are 9 such processes running
[2025-11-27 23:05:38] 2025-11-27 22:04:37,292 | INFO     | time since job start (85057s) is within the limit (172800.0s)
[2025-11-27 23:05:38] 2025-11-27 22:04:37,963 | INFO     | monitor loop #5729: job 0:6895356889 is in state 'finished'
[2025-11-27 23:05:38] 2025-11-27 22:04:37,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:05:38] 2025-11-27 22:04:39,305 | INFO     | time since job start (85059s) is within the limit (172800.0s)
[2025-11-27 23:05:38] 2025-11-27 22:04:40,469 | INFO     | monitor loop #5730: job 0:6895356889 is in state 'finished'
[2025-11-27 23:05:38] 2025-11-27 22:04:40,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:05:38] 2025-11-27 22:04:41,313 | INFO     | time since job start (85061s) is within the limit (172800.0s)
[2025-11-27 23:05:38] 2025-11-27 22:04:42,977 | INFO     | monitor loop #5731: job 0:6895356889 is in state 'finished'
[2025-11-27 23:05:38] 2025-11-27 22:04:42,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:05:38] 2025-11-27 22:04:43,320 | INFO     | time since job start (85063s) is within the limit (172800.0s)
[2025-11-27 23:05:38] 2025-11-27 22:04:44,517 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:05:38] 2025-11-27 22:04:44,518 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-27 23:05:38] 2025-11-27 22:04:44,520 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895356889/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:05:38] 2025-11-27 22:04:44,520 | INFO     | extracted standard info from prmon json
[2025-11-27 23:05:38] 2025-11-27 22:04:44,520 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:05:38] 2025-11-27 22:04:44,521 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:05:38] 2025-11-27 22:04:44,547 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:05:38] 2025-11-27 22:04:44,549 | INFO     | sum of square deviations: 822026941310.7795
[2025-11-27 23:05:38] 2025-11-27 22:04:44,605 | INFO     | sum of deviations: 3486660651628.621
[2025-11-27 23:05:38] 2025-11-27 22:04:44,605 | INFO     | mean x: 1764238742.5614161
[2025-11-27 23:05:38] 2025-11-27 22:04:44,605 | INFO     | mean y: 2843453.363439306
[2025-11-27 23:05:38] 2025-11-27 22:04:44,605 | INFO     | intersect: -7480246813.676913
[2025-11-27 23:05:38] 2025-11-27 22:04:44,607 | INFO     | chi2: 21.524818552745202
[2025-11-27 23:05:38] 2025-11-27 22:04:44,609 | INFO     | sum of square deviations: 813150274070.1274
[2025-11-27 23:05:38] 2025-11-27 22:04:44,674 | INFO     | sum of deviations: 3956082138543.306
[2025-11-27 23:05:38] 2025-11-27 22:04:44,674 | INFO     | mean x: 1764238590.0652647
[2025-11-27 23:05:38] 2025-11-27 22:04:44,674 | INFO     | mean y: 2851517.3966642492
[2025-11-27 23:05:38] 2025-11-27 22:04:44,674 | INFO     | intersect: -8580399324.235713
[2025-11-27 23:05:38] 2025-11-27 22:04:44,676 | INFO     | chi2: 18.211947126389774
[2025-11-27 23:05:38] 2025-11-27 22:04:44,676 | INFO     | current chi2=18.211947126389774 (change=15.390937759765302 %)
[2025-11-27 23:05:38] 2025-11-27 22:04:44,676 | INFO     | right removable region: 1378
[2025-11-27 23:05:38] 2025-11-27 22:04:44,678 | INFO     | sum of square deviations: 813149377980.1268
[2025-11-27 23:05:38] 2025-11-27 22:04:44,743 | INFO     | sum of deviations: 2906887944836.4946
[2025-11-27 23:05:38] 2025-11-27 22:04:44,744 | INFO     | mean x: 1764238895.0652647
[2025-11-27 23:05:38] 2025-11-27 22:04:44,744 | INFO     | mean y: 2853412.2944162437
[2025-11-27 23:05:38] 2025-11-27 22:04:44,744 | INFO     | intersect: -6304037934.7985325
[2025-11-27 23:05:38] 2025-11-27 22:04:44,746 | INFO     | chi2: 16.796215162824577
[2025-11-27 23:05:38] 2025-11-27 22:04:44,746 | INFO     | current chi2=16.796215162824577 (change=21.968145182425033 %)
[2025-11-27 23:05:38] 2025-11-27 22:04:44,746 | INFO     | left removable region: 10
[2025-11-27 23:05:38] 2025-11-27 22:04:44,748 | INFO     | sum of square deviations: 793845261908.543
[2025-11-27 23:05:38] 2025-11-27 22:04:44,820 | INFO     | sum of deviations: 2971537609920.5913
[2025-11-27 23:05:38] 2025-11-27 22:04:44,821 | INFO     | mean x: 1764238864.5738304
[2025-11-27 23:05:38] 2025-11-27 22:04:44,821 | INFO     | mean y: 2871607.687134503
[2025-11-27 23:05:38] 2025-11-27 22:04:44,821 | INFO     | intersect: -6601062925.298355
[2025-11-27 23:05:38] 2025-11-27 22:04:44,823 | INFO     | chi2: 9.584376241315725
[2025-11-27 23:05:38] 2025-11-27 22:04:44,823 | INFO     | current memory leak: 3.74 B/s (using 1368 data points, chi2=9.58)
[2025-11-27 23:05:38] 2025-11-27 22:04:44,824 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 23:05:38] 2025-11-27 22:04:44,824 | INFO     | ..............................
[2025-11-27 23:05:38] 2025-11-27 22:04:44,824 | INFO     | . Timing measurements:
[2025-11-27 23:05:38] 2025-11-27 22:04:44,824 | INFO     | . get job = 0 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,824 | INFO     | . initial setup = 8 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,825 | INFO     | . payload setup = 179 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,825 | INFO     | . stage-in = 0 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,825 | INFO     | . payload execution = 84575 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,825 | INFO     | . stage-out = 5 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,825 | INFO     | . log creation = 2 s
[2025-11-27 23:05:38] 2025-11-27 22:04:44,825 | INFO     | ..............................
[2025-11-27 23:05:38] 2025-11-27 22:04:45,305 | INFO     | 
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | job summary report
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | --------------------------------------------------
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | PanDA job id: 6895356889
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | task id: 47556149
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | errors: (none)
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | pilot state: finished 
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | transexitcode: 0
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | exeerrorcode: 0
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | exeerrordiag: 
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | exitcode: 0
[2025-11-27 23:05:38] 2025-11-27 22:04:45,306 | INFO     | exitmsg: OK
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | cpuconsumptiontime: 319328 s
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | nevents: 1000
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | neventsw: 0
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | pid: 16822
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | pgrp: 16822
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | corecount: 8
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | event service: False
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 45: 2284376, 55: 2284532, 66: 2284560, 77: 2284588, 87: 2284644, 98: 2284672, 108: 2285242, 
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | --------------------------------------------------
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | 
[2025-11-27 23:05:38] 2025-11-27 22:04:45,307 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 23:05:38] 2025-11-27 22:04:45,329 | INFO     | time since job start (85065s) is within the limit (172800.0s)
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:05:38] 2025-11-27 22:04:45,439 | INFO     | job 6895356889 has completed (purged errors)
[2025-11-27 23:05:38] 2025-11-27 22:04:45,439 | INFO     | overall cleanup function is called
[2025-11-27 23:05:38] 2025-11-27 22:04:46,454 | INFO     | --- collectZombieJob: --- 10, [16822]
[2025-11-27 23:05:38] 2025-11-27 22:04:46,455 | INFO     | zombie collector waiting for pid 16822
[2025-11-27 23:05:38] 2025-11-27 22:04:46,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:05:38] 2025-11-27 22:04:46,455 | INFO     | collected zombie processes
[2025-11-27 23:05:38] 2025-11-27 22:04:46,455 | INFO     | will attempt to kill all subprocesses of pid=16822
[2025-11-27 23:05:38] 2025-11-27 22:04:46,557 | INFO     | process IDs to be killed: [16822] (in reverse order)
[2025-11-27 23:05:38] 2025-11-27 22:04:47,118 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:05:38] 2025-11-27 22:04:47,118 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:05:38] 2025-11-27 22:04:47,121 | INFO     | did not find any defunct processes belonging to 16822
[2025-11-27 23:05:38] 2025-11-27 22:04:47,124 | INFO     | did not find any defunct processes belonging to 16822
[2025-11-27 23:05:38] 2025-11-27 22:04:47,157 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:05:38] 2025-11-27 22:04:47,158 | INFO     | ready for new job
[2025-11-27 23:05:38] 2025-11-27 22:04:47,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:05:38] 2025-11-27 22:04:47,163 | INFO     | ***************************************
[2025-11-27 23:05:38] 2025-11-27 22:04:47,163 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:05:38] 2025-11-27 22:04:47,163 | INFO     | ***************************************
[2025-11-27 23:05:38] 2025-11-27 22:04:47,163 | INFO     | 
[2025-11-27 23:05:38] 2025-11-27 22:04:47,164 | INFO     | pilot is running in a VM
[2025-11-27 23:05:38] 2025-11-27 22:04:47,164 | INFO     | architecture information:
[2025-11-27 23:05:38] 2025-11-27 22:04:47,177 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:05:38] 2025-11-27 22:04:47,509 | INFO     | cat /etc/os-release:
[2025-11-27 23:05:38] NAME="CentOS Linux"
[2025-11-27 23:05:38] VERSION="7 (Core)"
[2025-11-27 23:05:38] ID="centos"
[2025-11-27 23:05:38] ID_LIKE="rhel fedora"
[2025-11-27 23:05:38] VERSION_ID="7"
[2025-11-27 23:05:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:05:38] ANSI_COLOR="0;31"
[2025-11-27 23:05:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:05:38] HOME_URL="https://www.centos.org/"
[2025-11-27 23:05:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:05:38] 
[2025-11-27 23:05:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:05:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:05:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:05:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:05:38] 
[2025-11-27 23:05:38] 2025-11-27 22:04:47,509 | INFO     | ***************************************
[2025-11-27 23:05:38] 2025-11-27 22:04:48,012 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 23:05:38] 2025-11-27 22:04:48,243 | INFO     | sufficient remaining disk space (495354642432 B)
[2025-11-27 23:05:38] 2025-11-27 22:04:48,243 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:05:38] 2025-11-27 22:04:48,243 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:05:38] 2025-11-27 22:04:48,243 | INFO     | update_server=False
[2025-11-27 23:05:38] 2025-11-27 22:04:48,244 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:05:38] 2025-11-27 22:04:48,298 | INFO     | all job control threads have been joined
[2025-11-27 23:05:38] 2025-11-27 22:04:48,753 | INFO     | all data control threads have been joined
[2025-11-27 23:05:38] 2025-11-27 22:04:48,802 | INFO     | all payload control threads have been joined
[2025-11-27 23:05:38] 2025-11-27 22:04:48,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:05:38] 2025-11-27 22:04:48,999 | INFO     | aborting loop
[2025-11-27 23:05:38] 2025-11-27 22:04:49,249 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,304 | INFO     | [job] control thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,386 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:05:38] 2025-11-27 22:04:49,470 | INFO     | [job] validate thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,547 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,759 | INFO     | [data] control thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,808 | INFO     | [payload] control thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,811 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:49,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:05:38] 2025-11-27 22:04:50,004 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:50,024 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:50,281 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:50,412 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:50,678 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:50,975 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:51,476 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:04:51,659 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:05:38] 2025-11-27 22:04:55,668 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:05:38] 2025-11-27 22:05:18,477 | INFO     | PID=10217 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:05:38] 2025-11-27 22:05:18,477 | INFO     | .. there are 9 such processes running
[2025-11-27 23:05:38] 2025-11-27 22:05:18,478 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:05:38] 2025-11-27 22:05:18,478 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:05:38] 2025-11-27 22:05:18,478 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:05:38] 2025-11-27 22:05:28,539 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:05:38] 2025-11-27 22:05:29,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757685856064)>', '<ExcThread(monitor, started 139756960741120)>']
[2025-11-27 23:05:38] 2025-11-27 22:05:29,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:05:38] 2025-11-27 22:05:29,544 | INFO     | [monitor] control thread has ended
[2025-11-27 23:05:38] 2025-11-27 22:05:34,161 | INFO     | all workflow threads have been joined
[2025-11-27 23:05:38] 2025-11-27 22:05:34,162 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:05:38] 2025-11-27 22:05:34,162 | INFO     | traces error code: 0
[2025-11-27 23:05:38] 2025-11-27 22:05:34,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:05:38] 2025-11-27 22:05:34,482 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:05:38] 2025-11-27 22:05:34,589 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:05:38] 2025-11-27 22:05:34,693 [wrapper] pilotpid: 10217
[2025-11-27 23:05:38] 2025-11-27 22:05:34,779 [wrapper] Pilot exit status: 0
[2025-11-27 23:05:38] 2025-11-27 22:05:35,138 [wrapper] pandaids: 6895356889
[2025-11-27 23:05:38] 2025-11-27 22:05:35,912 [wrapper] cleanup supervisor_pilot 22443 10218
[2025-11-27 23:05:38] 2025-11-27 22:05:36,022 [wrapper] Test setup, not cleaning
[2025-11-27 23:05:38] 2025-11-27 22:05:36,077 [wrapper] apfmon messages muted
[2025-11-27 23:05:38] 2025-11-27 22:05:36,164 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:05:38] 2025-11-27 22:05:36,259 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:05:38]  *** Error codes and diagnostics ***
[2025-11-27 23:05:38]     "exeErrorCode": 0,
[2025-11-27 23:05:38]     "exeErrorDiag": "",
[2025-11-27 23:05:38]     "pilotErrorCode": 0,
[2025-11-27 23:05:38]     "pilotErrorDiag": "",
[2025-11-27 23:05:38]  *** Listing of results directory ***
[2025-11-27 23:05:38] total 1330432
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc    576529 Nov 23 12:12 pilot3.tar.gz
[2025-11-27 23:05:38] -rwx------. 1 boinc boinc     36292 Nov 23 12:30 runpilot2-wrapper.sh
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc      5112 Nov 23 12:30 queuedata.json
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc       100 Nov 26 23:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:05:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 23:23 run_atlas
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc       105 Nov 26 23:23 job.xml
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc      6391 Nov 26 23:23 init_data.xml
[2025-11-27 23:05:38] -rw-r--r--. 2 boinc boinc 408740208 Nov 26 23:23 EVNT.47483658._001157.pool.root.1
[2025-11-27 23:05:38] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:23 start_atlas.sh
[2025-11-27 23:05:38] drwxrwx--x. 2 boinc boinc        68 Nov 26 23:23 shared
[2025-11-27 23:05:38] -rw-r--r--. 2 boinc boinc    590108 Nov 26 23:23 input.tar.gz
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc         0 Nov 26 23:23 boinc_lockfile
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc      2785 Nov 26 23:23 pandaJob.out
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc    991546 Nov 26 23:26 agis_schedconf.cvmfs.json
[2025-11-27 23:05:38] drwx------. 5 boinc boinc      4096 Nov 26 23:27 pilot3
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc       533 Nov 27 22:43 boinc_task_state.xml
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc 922100732 Nov 27 23:01 HITS.47556149._001433.pool.root.1
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc      1028 Nov 27 23:02 memory_monitor_summary.json
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc   1516240 Nov 27 23:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc   2474253 Nov 27 23:03 log.47556149._001433.job.log.tgz.1
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc        95 Nov 27 23:04 pilot_heartbeat.json
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc      8630 Nov 27 23:04 heartbeat.json
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc      4884 Nov 27 23:05 pilotlog.txt
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:05 wrapper_checkpoint.txt
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:05 boinc_mmap_file
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc  11330843 Nov 27 23:05 log.47556149._001433.job.log.1
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc       353 Nov 27 23:05 output.list
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:05 runtime_log
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc  13824000 Nov 27 23:05 result.tar.gz
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:05 runtime_log.err
[2025-11-27 23:05:38] -rw-------. 1 boinc boinc       662 Nov 27 23:05 KZ8MDmuTNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjqKKDmKJIqRm.diag
[2025-11-27 23:05:38] -rw-r--r--. 1 boinc boinc     21512 Nov 27 23:05 stderr.txt
[2025-11-27 23:05:39] HITS file was successfully produced:
[2025-11-27 23:05:39] -rw-------. 1 boinc boinc 922100732 Nov 27 23:01 shared/HITS.pool.root.1
[2025-11-27 23:05:39]  *** Contents of shared directory: ***
[2025-11-27 23:05:39] total 1313752
[2025-11-27 23:05:39] -rw-r--r--. 2 boinc boinc 408740208 Nov 26 23:23 ATLAS.root_0
[2025-11-27 23:05:39] -rw-r--r--. 2 boinc boinc     15847 Nov 26 23:23 start_atlas.sh
[2025-11-27 23:05:39] -rw-r--r--. 2 boinc boinc    590108 Nov 26 23:23 input.tar.gz
[2025-11-27 23:05:39] -rw-------. 1 boinc boinc 922100732 Nov 27 23:01 HITS.pool.root.1
[2025-11-27 23:05:39] -rw-------. 1 boinc boinc  13824000 Nov 27 23:05 result.tar.gz
23:05:40 (6459): run_atlas exited; CPU time 319902.837278
23:05:40 (6459): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN