Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:32:08 (491144): wrapper (7.7.26015): starting
10:32:08 (491144): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 10:32:08] Arguments: --nthreads 12
[2025-11-24 10:32:08] Threads: 12
[2025-11-24 10:32:08] Checking for CVMFS
[2025-11-24 10:32:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:32:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:32:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:32:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:32:10] 2.11.5.0 2081521 25826 208072 153255 0 139 27679500 45568001 16086 130560 0 166414173 99.796 98998143 18841 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-24 10:32:10] CVMFS is ok
[2025-11-24 10:32:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:32:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:32:10] Further information can be found at the LHC@home message board.
[2025-11-24 10:32:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:32:10] Checking for apptainer binary...
[2025-11-24 10:32:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:32:10] Running /usr/bin/apptainer --version
[2025-11-24 10:32:10] apptainer version 1.4.1-1.el9
[2025-11-24 10:32:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:32:10] wns0041.triumf.lcg
[2025-11-24 10:32:10] apptainer works
[2025-11-24 10:32:10] Set ATHENA_PROC_NUMBER=12
[2025-11-24 10:32:10] Set ATHENA_CORE_NUMBER=12
[2025-11-24 10:32:10] Starting ATLAS job with PandaID=6895386986
[2025-11-24 10:32:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:40:03]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | could have reported an average CPU frequency of 1293 MHz (4 samples)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | ..............................
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | . Timing measurements:
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . get job = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . initial setup = 4 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . payload setup = 19 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . stage-in = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . payload execution = 216 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . stage-out = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . log creation = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | ..............................
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 10:40:03] 2025-11-24 18:39:29,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895386986/pilotlog.txt
[2025-11-24 10:40:03] 2025-11-24 18:39:29,774 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-24 10:40:03] - Log from pilotlog.txt -
[2025-11-24 10:40:03] 2025-11-24 18:39:29,753 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895386986/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | INFO     | extracted standard info from prmon json
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 10:40:03] 2025-11-24 18:39:29,756 | WARNING  | wrong length of table data, x=[1764009245.0, 1764009306.0, 1764009367.0, 1764009428.0], y=[1804.0, 400551.0, 371706.0, 739544.0] (must be same and length>=4)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | could have reported an average CPU frequency of 1293 MHz (4 samples)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | ..............................
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | . Timing measurements:
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . get job = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . initial setup = 4 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . payload setup = 19 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . stage-in = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . payload execution = 216 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . stage-out = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . log creation = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | ..............................
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 10:40:03] 2025-11-24 18:39:29,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895386986/pilotlog.txt
[2025-11-24 10:40:03] 2025-11-24 18:39:29,774 | WARNING  | 
[2025-11-24 10:40:03] [begin log extracts]
[2025-11-24 10:40:03] - Log from pilotlog.txt -
[2025-11-24 10:40:03] 2025-11-24 18:39:29,753 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895386986/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | INFO     | extracted standard info from prmon json
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 10:40:03] 2025-11-24 18:39:29,755 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 10:40:03] 2025-11-24 18:39:29,756 | WARNING  | wrong length of table data, x=[1764009245.0, 1764009306.0, 1764009367.0, 1764009428.0], y=[1804.0, 400551.0, 371706.0, 739544.0] (must be same and length>=4)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | could have reported an average CPU frequency of 1293 MHz (4 samples)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | ..............................
[2025-11-24 10:40:03] 2025-11-24 18:39:29,757 | INFO     | . Timing measurements:
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . get job = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . initial setup = 4 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . payload setup = 19 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . stage-in = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . payload execution = 216 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . stage-out = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | . log creation = 0 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | ..............................
[2025-11-24 10:40:03] 2025-11-24 18:39:29,758 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-24 10:40:03] 2025-11-24 18:39:29,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895386986/pilotlog.txt
[2025-11-24 10:40:03] [end log extracts]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,774 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,775 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-24 10:40:03] 2025-11-24 18:39:29,880 | INFO     | 
[2025-11-24 10:40:03] 2025-11-24 18:39:29,880 | INFO     | job summary report
[2025-11-24 10:40:03] 2025-11-24 18:39:29,880 | INFO     | --------------------------------------------------
[2025-11-24 10:40:03] 2025-11-24 18:39:29,880 | INFO     | PanDA job id: 6895386986
[2025-11-24 10:40:03] 2025-11-24 18:39:29,880 | INFO     | task id: 47556149
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-24 10:37:14,454 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | pilot state: failed 
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | transexitcode: 65
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | exeerrorcode: 65
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | exitcode: 65
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-24 10:40:03] 2025-11-24 18:39:29,881 | INFO     | cpuconsumptiontime: 84 s
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | nevents: 0
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | neventsw: 0
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | pid: 507498
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | pgrp: 507498
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | corecount: 12
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | event service: False
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | sizes: {0: 2284085, 1: 2284284, 12: 2284284, 15: 2284574, 23: 2284602, 240: 2310182, 241: 2314472, 242: 2314500, 368: 2314666}
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | --------------------------------------------------
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | 
[2025-11-24 10:40:03] 2025-11-24 18:39:29,882 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-24 10:40:03] 2025-11-24 18:39:29,912 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,913 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,913 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,913 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,913 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,913 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,914 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,914 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,916 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,916 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:40:03] 2025-11-24 18:39:29,916 | INFO     | job 6895386986 has completed (purged errors)
[2025-11-24 10:40:03] 2025-11-24 18:39:29,917 | INFO     | overall cleanup function is called
[2025-11-24 10:40:03] 2025-11-24 18:39:30,343 | INFO     | PID=495022 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 10:40:03] 2025-11-24 18:39:30,343 | INFO     | .. there are 28 such processes running
[2025-11-24 10:40:03] 2025-11-24 18:39:30,926 | INFO     | --- collectZombieJob: --- 10, [507498]
[2025-11-24 10:40:03] 2025-11-24 18:39:30,927 | INFO     | zombie collector waiting for pid 507498
[2025-11-24 10:40:03] 2025-11-24 18:39:30,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:40:03] 2025-11-24 18:39:30,927 | INFO     | collected zombie processes
[2025-11-24 10:40:03] 2025-11-24 18:39:30,927 | INFO     | will attempt to kill all subprocesses of pid=507498
[2025-11-24 10:40:03] 2025-11-24 18:39:31,270 | INFO     | process IDs to be killed: [507498] (in reverse order)
[2025-11-24 10:40:03] 2025-11-24 18:39:31,391 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:40:03] 2025-11-24 18:39:31,391 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:40:03] 2025-11-24 18:39:31,405 | INFO     | did not find any defunct processes belonging to 507498
[2025-11-24 10:40:03] 2025-11-24 18:39:31,433 | INFO     | did not find any defunct processes belonging to 507498
[2025-11-24 10:40:03] 2025-11-24 18:39:31,435 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:40:03] 2025-11-24 18:39:31,443 | INFO     | ready for new job
[2025-11-24 10:40:03] 2025-11-24 18:39:31,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:40:03] 2025-11-24 18:39:31,445 | INFO     | ***************************************
[2025-11-24 10:40:03] 2025-11-24 18:39:31,445 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:40:03] 2025-11-24 18:39:31,445 | INFO     | ***************************************
[2025-11-24 10:40:03] 2025-11-24 18:39:31,445 | INFO     | 
[2025-11-24 10:40:03] 2025-11-24 18:39:31,466 | INFO     | architecture information:
[2025-11-24 10:40:03] 2025-11-24 18:39:31,474 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:40:03] 2025-11-24 18:39:31,499 | INFO     | cat /etc/os-release:
[2025-11-24 10:40:03] NAME="CentOS Linux"
[2025-11-24 10:40:03] VERSION="7 (Core)"
[2025-11-24 10:40:03] ID="centos"
[2025-11-24 10:40:03] ID_LIKE="rhel fedora"
[2025-11-24 10:40:03] VERSION_ID="7"
[2025-11-24 10:40:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:40:03] ANSI_COLOR="0;31"
[2025-11-24 10:40:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:40:03] HOME_URL="https://www.centos.org/"
[2025-11-24 10:40:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:40:03] 
[2025-11-24 10:40:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:40:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:40:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:40:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:40:03] 
[2025-11-24 10:40:03] 2025-11-24 18:39:31,499 | INFO     | ***************************************
[2025-11-24 10:40:03] 2025-11-24 18:39:32,005 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-24 10:40:03] 2025-11-24 18:39:32,034 | INFO     | sufficient remaining disk space (1593022873600 B)
[2025-11-24 10:40:03] 2025-11-24 18:39:32,035 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:40:03] 2025-11-24 18:39:32,035 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:40:03] 2025-11-24 18:39:32,035 | INFO     | update_server=False
[2025-11-24 10:40:03] 2025-11-24 18:39:32,035 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:40:03] 2025-11-24 18:39:32,036 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:40:03] 2025-11-24 18:39:32,036 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:40:03] 2025-11-24 18:39:32,036 | INFO     | aborting loop
[2025-11-24 10:40:03] 2025-11-24 18:39:32,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:40:03] 2025-11-24 18:39:32,392 | INFO     | all payload control threads have been joined
[2025-11-24 10:40:03] 2025-11-24 18:39:32,525 | INFO     | all data control threads have been joined
[2025-11-24 10:40:03] 2025-11-24 18:39:33,040 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,041 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,398 | INFO     | [payload] control thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,464 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,494 | INFO     | [job] validate thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,510 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,530 | INFO     | [data] control thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,709 | INFO     | all job control threads have been joined
[2025-11-24 10:40:03] 2025-11-24 18:39:33,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,829 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:33,881 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:34,041 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:34,281 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:34,445 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:34,714 | INFO     | [job] control thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:34,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:40:03] 2025-11-24 18:39:35,894 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:36,083 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:40:03] 2025-11-24 18:39:42,479 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:40:03] 2025-11-24 18:39:43,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140313121208128)>', '<ExcThread(monitor, started 140312580171520)>']
[2025-11-24 10:40:03] 2025-11-24 18:39:48,271 | INFO     | all workflow threads have been joined
[2025-11-24 10:40:03] 2025-11-24 18:39:48,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:40:03] 2025-11-24 18:39:48,272 | INFO     | traces error code: 0
[2025-11-24 10:40:03] 2025-11-24 18:39:48,272 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:40:03] 2025-11-24 18:40:02,863 | INFO     | PID=495022 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 10:40:03] 2025-11-24 18:40:02,864 | INFO     | .. there are 28 such processes running
[2025-11-24 10:40:03] 2025-11-24 18:40:02,865 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:40:03] 2025-11-24 18:40:02,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:40:03] 2025-11-24 18:40:02,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:40:03] 2025-11-24 18:40:02,865 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:40:03] 2025-11-24 18:40:02,865 | INFO     | [monitor] control thread has ended
[2025-11-24 10:40:03] 2025-11-24 18:40:03,016 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:40:03] 2025-11-24 18:40:03,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:40:03] 2025-11-24 18:40:03,022 [wrapper] pilotpid: 495022
[2025-11-24 10:40:03] 2025-11-24 18:40:03,026 [wrapper] Pilot exit status: 0
[2025-11-24 10:40:03] 2025-11-24 18:40:03,040 [wrapper] pandaids: 6895386986
[2025-11-24 10:40:03] 2025-11-24 18:40:03,120 [wrapper] cleanup supervisor_pilot  495028 495023
[2025-11-24 10:40:03] 2025-11-24 18:40:03,123 [wrapper] Test setup, not cleaning
[2025-11-24 10:40:03] 2025-11-24 18:40:03,126 [wrapper] apfmon messages muted
[2025-11-24 10:40:03] 2025-11-24 18:40:03,130 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:40:03] 2025-11-24 18:40:03,134 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:40:03]  *** Error codes and diagnostics ***
[2025-11-24 10:40:03]     "exeErrorCode": 65,
[2025-11-24 10:40:03]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-24 10:40:03]     "pilotErrorCode": 1305,
[2025-11-24 10:40:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-24 10:40:03]  *** Listing of results directory ***
[2025-11-24 10:40:03] total 406492
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc    576529 Nov 23 22:20 pilot3.tar.gz
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc      5112 Nov 23 22:23 queuedata.json
[2025-11-24 10:40:03] -rwx------. 1 boinc boinc     36292 Nov 23 22:23 runpilot2-wrapper.sh
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc       100 Nov 24 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:40:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 10:32 run_atlas
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc       105 Nov 24 10:32 job.xml
[2025-11-24 10:40:03] -rw-r--r--. 2 boinc boinc 411992958 Nov 24 10:32 EVNT.47483658._001257.pool.root.1
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc      6595 Nov 24 10:32 init_data.xml
[2025-11-24 10:40:03] drwxrwx--x. 2 boinc boinc      4096 Nov 24 10:32 shared
[2025-11-24 10:40:03] -rw-r--r--. 2 boinc boinc    590107 Nov 24 10:32 input.tar.gz
[2025-11-24 10:40:03] -rw-r--r--. 2 boinc boinc     15847 Nov 24 10:32 start_atlas.sh
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc         0 Nov 24 10:32 boinc_lockfile
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc      2785 Nov 24 10:32 pandaJob.out
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc    991801 Nov 24 10:32 agis_schedconf.cvmfs.json
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc   1516227 Nov 24 10:32 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:40:03] drwx------. 5 boinc boinc      4096 Nov 24 10:32 pilot3
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc       524 Nov 24 10:37 boinc_task_state.xml
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc      1021 Nov 24 10:37 memory_monitor_summary.json
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc     50853 Nov 24 10:37 log.47556149._002437.job.log.tgz.1
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc     10340 Nov 24 10:39 heartbeat.json
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc      8192 Nov 24 10:39 boinc_mmap_file
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc        23 Nov 24 10:39 wrapper_checkpoint.txt
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc        95 Nov 24 10:40 pilot_heartbeat.json
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc       822 Nov 24 10:40 pilotlog.txt
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc    117426 Nov 24 10:40 log.47556149._002437.job.log.1
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc       186 Nov 24 10:40 output.list
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc       620 Nov 24 10:40 runtime_log
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc    194560 Nov 24 10:40 result.tar.gz
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc      8636 Nov 24 10:40 runtime_log.err
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc       645 Nov 24 10:40 NuzNDm59eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpVLKDmIVu5ln.diag
[2025-11-24 10:40:03] -rw-r--r--. 1 boinc boinc     22635 Nov 24 10:40 stderr.txt
[2025-11-24 10:40:03] No HITS result produced
[2025-11-24 10:40:03]  *** Contents of shared directory: ***
[2025-11-24 10:40:03] total 403132
[2025-11-24 10:40:03] -rw-r--r--. 2 boinc boinc 411992958 Nov 24 10:32 ATLAS.root_0
[2025-11-24 10:40:03] -rw-r--r--. 2 boinc boinc    590107 Nov 24 10:32 input.tar.gz
[2025-11-24 10:40:03] -rw-r--r--. 2 boinc boinc     15847 Nov 24 10:32 start_atlas.sh
[2025-11-24 10:40:03] -rw-------. 1 boinc boinc    194560 Nov 24 10:40 result.tar.gz
10:40:04 (491144): run_atlas exited; CPU time 82.925034
10:40:04 (491144): called boinc_finish(0)

</stderr_txt>
]]>

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