Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:14 (575993): wrapper (7.7.26015): starting
18:38:14 (575993): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 18:38:14] Arguments: --nthreads 4
[2025-11-26 18:38:14] Threads: 4
[2025-11-26 18:38:14] Checking for CVMFS
[2025-11-26 18:38:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:38:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:38:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:38:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:38:15] 2.9.2.0 3057 3740 82764 153330 1 77 35735327 36864001 651 130560 0 1634599 99.982 140103 2120 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 18:38:15] CVMFS is ok
[2025-11-26 18:38:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:38:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:38:15] Further information can be found at the LHC@home message board.
[2025-11-26 18:38:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:38:15] Checking for apptainer binary...
[2025-11-26 18:38:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:38:15] Running /usr/bin/apptainer --version
[2025-11-26 18:38:15] apptainer version 1.4.1-1.1
[2025-11-26 18:38:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:38:15] thA383a
[2025-11-26 18:38:15] apptainer works
[2025-11-26 18:38:15] Set ATHENA_PROC_NUMBER=4
[2025-11-26 18:38:15] Set ATHENA_CORE_NUMBER=4
[2025-11-26 18:38:15] Starting ATLAS job with PandaID=6895369825
[2025-11-26 18:38:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:29:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:29:59] 2025-11-27 00:29:10,708 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:29:59] 2025-11-27 00:29:10,708 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:29:59] 2025-11-27 00:29:10,708 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:29:59] 2025-11-27 00:29:10,708 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:29:59] 2025-11-27 00:29:10,708 | INFO     | job 6895369825 has completed (purged errors)
[2025-11-27 01:29:59] 2025-11-27 00:29:10,708 | INFO     | overall cleanup function is called
[2025-11-27 01:29:59] 2025-11-27 00:29:11,713 | INFO     | --- collectZombieJob: --- 10, [586379]
[2025-11-27 01:29:59] 2025-11-27 00:29:11,714 | INFO     | zombie collector waiting for pid 586379
[2025-11-27 01:29:59] 2025-11-27 00:29:11,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:29:59] 2025-11-27 00:29:11,714 | INFO     | collected zombie processes
[2025-11-27 01:29:59] 2025-11-27 00:29:11,714 | INFO     | will attempt to kill all subprocesses of pid=586379
[2025-11-27 01:29:59] 2025-11-27 00:29:11,759 | INFO     | process IDs to be killed: [586379] (in reverse order)
[2025-11-27 01:29:59] 2025-11-27 00:29:11,793 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:29:59] 2025-11-27 00:29:11,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:29:59] 2025-11-27 00:29:11,795 | INFO     | did not find any defunct processes belonging to 586379
[2025-11-27 01:29:59] 2025-11-27 00:29:11,797 | INFO     | did not find any defunct processes belonging to 586379
[2025-11-27 01:29:59] 2025-11-27 00:29:11,797 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:29:59] 2025-11-27 00:29:11,797 | INFO     | ready for new job
[2025-11-27 01:29:59] 2025-11-27 00:29:11,797 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:29:59] 2025-11-27 00:29:11,799 | INFO     | ***************************************
[2025-11-27 01:29:59] 2025-11-27 00:29:11,799 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:29:59] 2025-11-27 00:29:11,799 | INFO     | ***************************************
[2025-11-27 01:29:59] 2025-11-27 00:29:11,799 | INFO     | 
[2025-11-27 01:29:59] 2025-11-27 00:29:11,799 | INFO     | architecture information:
[2025-11-27 01:29:59] 2025-11-27 00:29:11,800 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:29:59] 2025-11-27 00:29:11,814 | INFO     | cat /etc/os-release:
[2025-11-27 01:29:59] NAME="CentOS Linux"
[2025-11-27 01:29:59] VERSION="7 (Core)"
[2025-11-27 01:29:59] ID="centos"
[2025-11-27 01:29:59] ID_LIKE="rhel fedora"
[2025-11-27 01:29:59] VERSION_ID="7"
[2025-11-27 01:29:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:29:59] ANSI_COLOR="0;31"
[2025-11-27 01:29:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:29:59] HOME_URL="https://www.centos.org/"
[2025-11-27 01:29:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:29:59] 
[2025-11-27 01:29:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:29:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:29:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:29:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:29:59] 
[2025-11-27 01:29:59] 2025-11-27 00:29:11,814 | INFO     | ***************************************
[2025-11-27 01:29:59] 2025-11-27 00:29:12,317 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 01:29:59] 2025-11-27 00:29:12,335 | INFO     | sufficient remaining disk space (219778383872 B)
[2025-11-27 01:29:59] 2025-11-27 00:29:12,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:29:59] 2025-11-27 00:29:12,335 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:29:59] 2025-11-27 00:29:12,335 | INFO     | update_server=False
[2025-11-27 01:29:59] 2025-11-27 00:29:12,335 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:29:59] 2025-11-27 00:29:12,335 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:29:59] 2025-11-27 00:29:12,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:29:59] 2025-11-27 00:29:12,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:29:59] 2025-11-27 00:29:12,715 | INFO     | all payload control threads have been joined
[2025-11-27 01:29:59] 2025-11-27 00:29:12,768 | INFO     | all data control threads have been joined
[2025-11-27 01:29:59] 2025-11-27 00:29:12,933 | INFO     | all job control threads have been joined
[2025-11-27 01:29:59] 2025-11-27 00:29:13,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:29:59] 2025-11-27 00:29:13,271 | INFO     | aborting loop
[2025-11-27 01:29:59] 2025-11-27 00:29:13,340 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,341 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,352 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,379 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,548 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,693 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,721 | INFO     | [payload] control thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,774 | INFO     | [data] control thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,931 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:13,939 | INFO     | [job] control thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:14,260 | INFO     | [job] validate thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:14,277 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:14,321 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:14,341 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:14,502 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:16,546 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:29:59] 2025-11-27 00:29:43,150 | INFO     | PID=579784 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:29:59] 2025-11-27 00:29:43,150 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:29:59] 2025-11-27 00:29:43,150 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:29:59] 2025-11-27 00:29:43,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:29:59] 2025-11-27 00:29:53,656 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:29:59] 2025-11-27 00:29:53,914 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158143883072)>', '<ExcThread(monitor, started 140157483194112)>']
[2025-11-27 01:29:59] 2025-11-27 00:29:54,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:29:59] 2025-11-27 00:29:54,209 | INFO     | [monitor] control thread has ended
[2025-11-27 01:29:59] 2025-11-27 00:29:58,929 | INFO     | all workflow threads have been joined
[2025-11-27 01:29:59] 2025-11-27 00:29:58,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:29:59] 2025-11-27 00:29:58,930 | INFO     | traces error code: 0
[2025-11-27 01:29:59] 2025-11-27 00:29:58,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:29:59] 2025-11-27 00:29:59,006 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:29:59] 2025-11-27 00:29:59,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:29:59] 2025-11-27 00:29:59,014 [wrapper] pilotpid: 579784
[2025-11-27 01:29:59] 2025-11-27 00:29:59,018 [wrapper] Pilot exit status: 0
[2025-11-27 01:29:59] 2025-11-27 00:29:59,031 [wrapper] pandaids: 6895369825
[2025-11-27 01:29:59] 2025-11-27 00:29:59,056 [wrapper] cleanup supervisor_pilot  634351 579785
[2025-11-27 01:29:59] 2025-11-27 00:29:59,060 [wrapper] Test setup, not cleaning
[2025-11-27 01:29:59] 2025-11-27 00:29:59,063 [wrapper] apfmon messages muted
[2025-11-27 01:29:59] 2025-11-27 00:29:59,067 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:29:59] 2025-11-27 00:29:59,071 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:29:59]  *** Error codes and diagnostics ***
[2025-11-27 01:29:59]     "exeErrorCode": 0,
[2025-11-27 01:29:59]     "exeErrorDiag": "",
[2025-11-27 01:29:59]     "pilotErrorCode": 0,
[2025-11-27 01:29:59]     "pilotErrorDiag": "",
[2025-11-27 01:29:59]  *** Listing of results directory ***
[2025-11-27 01:29:59] total 1303452
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc    576529 Nov 23 21:16 pilot3.tar.gz
[2025-11-27 01:29:59] -rwx------ 1 boinc boinc     36292 Nov 23 21:27 runpilot2-wrapper.sh
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc      5112 Nov 23 21:27 queuedata.json
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc       100 Nov 26 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:29:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 18:38 run_atlas
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc       105 Nov 26 18:38 job.xml
[2025-11-27 01:29:59] -rw-r--r-- 2 boinc boinc 409022161 Nov 26 18:38 EVNT.47483658._000890.pool.root.1
[2025-11-27 01:29:59] -rw-r--r-- 2 boinc boinc    590103 Nov 26 18:38 input.tar.gz
[2025-11-27 01:29:59] -rw-r--r-- 2 boinc boinc     15847 Nov 26 18:38 start_atlas.sh
[2025-11-27 01:29:59] drwxrwx--x 2 boinc boinc      4096 Nov 26 18:38 shared
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:38 boinc_setup_complete
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc      6379 Nov 26 18:38 init_data.xml
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc         0 Nov 26 18:38 boinc_lockfile
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc      2786 Nov 26 18:38 pandaJob.out
[2025-11-27 01:29:59] -rw------- 1 boinc boinc    991530 Nov 26 18:38 agis_schedconf.cvmfs.json
[2025-11-27 01:29:59] drwx------ 5 boinc boinc      4096 Nov 26 18:38 pilot3
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc       532 Nov 27 01:24 boinc_task_state.xml
[2025-11-27 01:29:59] -rw------- 1 boinc boinc 912347372 Nov 27 01:28 HITS.47556137._008768.pool.root.1
[2025-11-27 01:29:59] -rw------- 1 boinc boinc      1029 Nov 27 01:29 memory_monitor_summary.json
[2025-11-27 01:29:59] -rw------- 1 boinc boinc   1516240 Nov 27 01:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:29:59] -rw------- 1 boinc boinc   1256497 Nov 27 01:29 log.47556137._008768.job.log.tgz.1
[2025-11-27 01:29:59] -rw------- 1 boinc boinc      8576 Nov 27 01:29 heartbeat.json
[2025-11-27 01:29:59] -rw------- 1 boinc boinc        95 Nov 27 01:29 pilot_heartbeat.json
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc      8192 Nov 27 01:29 boinc_mmap_file
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc        28 Nov 27 01:29 wrapper_checkpoint.txt
[2025-11-27 01:29:59] -rw------- 1 boinc boinc      4751 Nov 27 01:29 pilotlog.txt
[2025-11-27 01:29:59] -rw------- 1 boinc boinc   3473234 Nov 27 01:29 log.47556137._008768.job.log.1
[2025-11-27 01:29:59] -rw------- 1 boinc boinc       353 Nov 27 01:29 output.list
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc       620 Nov 27 01:29 runtime_log
[2025-11-27 01:29:59] -rw------- 1 boinc boinc   4751360 Nov 27 01:29 result.tar.gz
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc      8903 Nov 27 01:29 runtime_log.err
[2025-11-27 01:29:59] -rw------- 1 boinc boinc       666 Nov 27 01:29 8K0LDmFrVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSkIKDmc7XE8m.diag
[2025-11-27 01:29:59] -rw-r--r-- 1 boinc boinc     11426 Nov 27 01:29 stderr.txt
[2025-11-27 01:29:59] HITS file was successfully produced:
[2025-11-27 01:29:59] -rw------- 1 boinc boinc 912347372 Nov 27 01:28 shared/HITS.pool.root.1
[2025-11-27 01:29:59]  *** Contents of shared directory: ***
[2025-11-27 01:29:59] total 1295648
[2025-11-27 01:29:59] -rw-r--r-- 2 boinc boinc 409022161 Nov 26 18:38 ATLAS.root_0
[2025-11-27 01:29:59] -rw-r--r-- 2 boinc boinc    590103 Nov 26 18:38 input.tar.gz
[2025-11-27 01:29:59] -rw-r--r-- 2 boinc boinc     15847 Nov 26 18:38 start_atlas.sh
[2025-11-27 01:29:59] -rw------- 1 boinc boinc 912347372 Nov 27 01:28 HITS.pool.root.1
[2025-11-27 01:29:59] -rw------- 1 boinc boinc   4751360 Nov 27 01:29 result.tar.gz
01:30:00 (575993): run_atlas exited; CPU time 96384.464196
01:30:00 (575993): called boinc_finish(0)

</stderr_txt>
]]>

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