Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:24:35 (2818): wrapper (7.7.26015): starting
00:24:35 (2818): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:24:35] Arguments: --nthreads 8
[2025-11-27 00:24:35] Threads: 8
[2025-11-27 00:24:35] Checking for CVMFS
[2025-11-27 00:24:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:24:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:24:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:24:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:24:37] 2.11.2.0 25379 285976 133028 153340 2 84 16111334 25165825 1288 130560 14 142729554 99.886 82919109 2785 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:24:37] CVMFS is ok
[2025-11-27 00:24:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:24:37] Checking for apptainer binary...
[2025-11-27 00:24:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:24:37] Running /usr/bin/apptainer --version
[2025-11-27 00:24:38] apptainer version 1.3.2-1.el7
[2025-11-27 00:24:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:24:45] cg-vwn336.simple-grid.lan
[2025-11-27 00:24:45] apptainer works
[2025-11-27 00:24:45] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:24:45] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:24:45] Starting ATLAS job with PandaID=6895350265
[2025-11-27 00:24:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:38:18]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:38:18] 2025-11-27 22:37:28,831 | INFO     | PID=6651 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:38:18] 2025-11-27 22:37:28,831 | INFO     | .. there are 9 such processes running
[2025-11-27 23:38:18] 2025-11-27 22:37:29,832 | INFO     | time since job start (83339s) is within the limit (172800.0s)
[2025-11-27 23:38:18] 2025-11-27 22:37:30,725 | INFO     | monitor loop #5602: job 0:6895350265 is in state 'finished'
[2025-11-27 23:38:18] 2025-11-27 22:37:30,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:38:18] 2025-11-27 22:37:31,838 | INFO     | time since job start (83341s) is within the limit (172800.0s)
[2025-11-27 23:38:18] 2025-11-27 22:37:33,236 | INFO     | monitor loop #5603: job 0:6895350265 is in state 'finished'
[2025-11-27 23:38:18] 2025-11-27 22:37:33,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:38:18] 2025-11-27 22:37:33,845 | INFO     | time since job start (83343s) is within the limit (172800.0s)
[2025-11-27 23:38:18] 2025-11-27 22:37:35,746 | INFO     | monitor loop #5604: job 0:6895350265 is in state 'finished'
[2025-11-27 23:38:18] 2025-11-27 22:37:35,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:38:18] 2025-11-27 22:37:35,852 | INFO     | time since job start (83345s) is within the limit (172800.0s)
[2025-11-27 23:38:18] 2025-11-27 22:37:37,859 | INFO     | time since job start (83347s) is within the limit (172800.0s)
[2025-11-27 23:38:18] 2025-11-27 22:37:38,252 | INFO     | monitor loop #5605: job 0:6895350265 is in state 'finished'
[2025-11-27 23:38:18] 2025-11-27 22:37:38,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:38:18] 2025-11-27 22:37:39,745 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:38:18] 2025-11-27 22:37:39,746 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:38:18] 2025-11-27 22:37:39,748 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6895350265/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:38:18] 2025-11-27 22:37:39,749 | INFO     | extracted standard info from prmon json
[2025-11-27 23:38:18] 2025-11-27 22:37:39,749 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:38:18] 2025-11-27 22:37:39,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:38:18] 2025-11-27 22:37:39,783 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:38:18] 2025-11-27 22:37:39,785 | INFO     | sum of square deviations: 774851377354.7551
[2025-11-27 23:38:18] 2025-11-27 22:37:39,867 | INFO     | sum of deviations: 3476161172479.6987
[2025-11-27 23:38:18] 2025-11-27 22:37:39,867 | INFO     | mean x: 1764241579.082535
[2025-11-27 23:38:18] 2025-11-27 22:37:39,868 | INFO     | mean y: 2844779.1812822404
[2025-11-27 23:38:18] 2025-11-27 22:37:39,868 | INFO     | intersect: -7911947986.648915
[2025-11-27 23:38:18] 2025-11-27 22:37:39,876 | INFO     | chi2: 20.265009616805536
[2025-11-27 23:38:18] 2025-11-27 22:37:39,878 | INFO     | sum of square deviations: 766318307253.8744
[2025-11-27 23:38:18] 2025-11-27 22:37:39,890 | INFO     | time since job start (83349s) is within the limit (172800.0s)
[2025-11-27 23:38:18] 2025-11-27 22:37:39,945 | INFO     | sum of deviations: 3923686234839.5166
[2025-11-27 23:38:18] 2025-11-27 22:37:39,945 | INFO     | mean x: 1764241426.5865386
[2025-11-27 23:38:18] 2025-11-27 22:37:39,946 | INFO     | mean y: 2852776.072485207
[2025-11-27 23:38:18] 2025-11-27 22:37:39,946 | INFO     | intersect: -9030377586.435253
[2025-11-27 23:38:18] 2025-11-27 22:37:39,947 | INFO     | chi2: 17.128538152731945
[2025-11-27 23:38:18] 2025-11-27 22:37:39,947 | INFO     | current chi2=17.128538152731945 (change=15.477275971645982 %)
[2025-11-27 23:38:18] 2025-11-27 22:37:39,948 | INFO     | right removable region: 1351
[2025-11-27 23:38:18] 2025-11-27 22:37:39,949 | INFO     | sum of square deviations: 766317411163.8748
[2025-11-27 23:38:18] 2025-11-27 22:37:40,026 | INFO     | sum of deviations: 2904407030078.73
[2025-11-27 23:38:18] 2025-11-27 22:37:40,026 | INFO     | mean x: 1764241731.5865386
[2025-11-27 23:38:18] 2025-11-27 22:37:40,026 | INFO     | mean y: 2854995.908284024
[2025-11-27 23:38:18] 2025-11-27 22:37:40,026 | INFO     | intersect: -6683768605.917259
[2025-11-27 23:38:18] 2025-11-27 22:37:40,028 | INFO     | chi2: 15.485109521136993
[2025-11-27 23:38:18] 2025-11-27 22:37:40,028 | INFO     | current chi2=15.485109521136993 (change=23.58696189171619 %)
[2025-11-27 23:38:18] 2025-11-27 22:37:40,029 | INFO     | left removable region: 10
[2025-11-27 23:38:18] 2025-11-27 22:37:40,030 | INFO     | sum of square deviations: 747764788251.7815
[2025-11-27 23:38:18] 2025-11-27 22:37:40,079 | INFO     | sum of deviations: 2990974211485.4785
[2025-11-27 23:38:18] 2025-11-27 22:37:40,080 | INFO     | mean x: 1764241701.095451
[2025-11-27 23:38:18] 2025-11-27 22:37:40,080 | INFO     | mean y: 2873681.3243847876
[2025-11-27 23:38:18] 2025-11-27 22:37:40,080 | INFO     | intersect: -7053892715.954813
[2025-11-27 23:38:18] 2025-11-27 22:37:40,082 | INFO     | chi2: 8.199461363129682
[2025-11-27 23:38:18] 2025-11-27 22:37:40,082 | INFO     | current memory leak: 4.00 B/s (using 1341 data points, chi2=8.20)
[2025-11-27 23:38:18] 2025-11-27 22:37:40,084 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 23:38:18] 2025-11-27 22:37:40,084 | INFO     | ..............................
[2025-11-27 23:38:18] 2025-11-27 22:37:40,084 | INFO     | . Timing measurements:
[2025-11-27 23:38:18] 2025-11-27 22:37:40,084 | INFO     | . get job = 0 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,084 | INFO     | . initial setup = 8 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,085 | INFO     | . payload setup = 145 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,085 | INFO     | . stage-in = 0 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,085 | INFO     | . payload execution = 82903 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,085 | INFO     | . stage-out = 5 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,085 | INFO     | . log creation = 2 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,085 | INFO     | ..............................
[2025-11-27 23:38:18] 2025-11-27 22:37:40,212 | INFO     | 
[2025-11-27 23:38:18] 2025-11-27 22:37:40,212 | INFO     | job summary report
[2025-11-27 23:38:18] 2025-11-27 22:37:40,212 | INFO     | --------------------------------------------------
[2025-11-27 23:38:18] 2025-11-27 22:37:40,212 | INFO     | PanDA job id: 6895350265
[2025-11-27 23:38:18] 2025-11-27 22:37:40,212 | INFO     | task id: 47556137
[2025-11-27 23:38:18] 2025-11-27 22:37:40,212 | INFO     | errors: (none)
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | pilot state: finished 
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | transexitcode: 0
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | exeerrorcode: 0
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | exeerrordiag: 
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | exitcode: 0
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | exitmsg: OK
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | cpuconsumptiontime: 313490 s
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | nevents: 1000
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | neventsw: 0
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | pid: 13163
[2025-11-27 23:38:18] 2025-11-27 22:37:40,213 | INFO     | pgrp: 13163
[2025-11-27 23:38:18] 2025-11-27 22:37:40,214 | INFO     | corecount: 8
[2025-11-27 23:38:18] 2025-11-27 22:37:40,214 | INFO     | event service: False
[2025-11-27 23:38:18] 2025-11-27 22:37:40,214 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 44: 2284376, 55: 2284532, 66: 2284560, 77: 2284588, 88: 2284644, 98: 2284672, 102: 2285242, 
[2025-11-27 23:38:18] 2025-11-27 22:37:40,214 | INFO     | --------------------------------------------------
[2025-11-27 23:38:18] 2025-11-27 22:37:40,214 | INFO     | 
[2025-11-27 23:38:18] 2025-11-27 22:37:40,214 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-27 23:38:18] 2025-11-27 22:37:40,683 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | job 6895350265 has completed (purged errors)
[2025-11-27 23:38:18] 2025-11-27 22:37:40,685 | INFO     | overall cleanup function is called
[2025-11-27 23:38:18] 2025-11-27 22:37:41,708 | INFO     | --- collectZombieJob: --- 10, [13163]
[2025-11-27 23:38:18] 2025-11-27 22:37:41,708 | INFO     | zombie collector waiting for pid 13163
[2025-11-27 23:38:18] 2025-11-27 22:37:41,708 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:38:18] 2025-11-27 22:37:41,708 | INFO     | collected zombie processes
[2025-11-27 23:38:18] 2025-11-27 22:37:41,708 | INFO     | will attempt to kill all subprocesses of pid=13163
[2025-11-27 23:38:18] 2025-11-27 22:37:41,813 | INFO     | process IDs to be killed: [13163] (in reverse order)
[2025-11-27 23:38:18] 2025-11-27 22:37:42,392 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:38:18] 2025-11-27 22:37:42,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:38:18] 2025-11-27 22:37:42,395 | INFO     | did not find any defunct processes belonging to 13163
[2025-11-27 23:38:18] 2025-11-27 22:37:42,397 | INFO     | did not find any defunct processes belonging to 13163
[2025-11-27 23:38:18] 2025-11-27 22:37:42,444 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:38:18] 2025-11-27 22:37:42,444 | INFO     | ready for new job
[2025-11-27 23:38:18] 2025-11-27 22:37:42,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:38:18] 2025-11-27 22:37:42,449 | INFO     | ***************************************
[2025-11-27 23:38:18] 2025-11-27 22:37:42,449 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:38:18] 2025-11-27 22:37:42,449 | INFO     | ***************************************
[2025-11-27 23:38:18] 2025-11-27 22:37:42,449 | INFO     | 
[2025-11-27 23:38:18] 2025-11-27 22:37:42,450 | INFO     | pilot is running in a VM
[2025-11-27 23:38:18] 2025-11-27 22:37:42,450 | INFO     | architecture information:
[2025-11-27 23:38:18] 2025-11-27 22:37:42,456 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:38:18] 2025-11-27 22:37:42,754 | INFO     | cat /etc/os-release:
[2025-11-27 23:38:18] NAME="CentOS Linux"
[2025-11-27 23:38:18] VERSION="7 (Core)"
[2025-11-27 23:38:18] ID="centos"
[2025-11-27 23:38:18] ID_LIKE="rhel fedora"
[2025-11-27 23:38:18] VERSION_ID="7"
[2025-11-27 23:38:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:38:18] ANSI_COLOR="0;31"
[2025-11-27 23:38:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:38:18] HOME_URL="https://www.centos.org/"
[2025-11-27 23:38:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:38:18] 
[2025-11-27 23:38:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:38:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:38:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:38:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:38:18] 
[2025-11-27 23:38:18] 2025-11-27 22:37:42,755 | INFO     | ***************************************
[2025-11-27 23:38:18] 2025-11-27 22:37:43,258 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-27 23:38:18] 2025-11-27 22:37:43,474 | INFO     | sufficient remaining disk space (495418605568 B)
[2025-11-27 23:38:18] 2025-11-27 22:37:43,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:38:18] 2025-11-27 22:37:43,475 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:38:18] 2025-11-27 22:37:43,475 | INFO     | update_server=False
[2025-11-27 23:38:18] 2025-11-27 22:37:43,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:38:18] 2025-11-27 22:37:43,477 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:38:18] 2025-11-27 22:37:43,752 | INFO     | all data control threads have been joined
[2025-11-27 23:38:18] 2025-11-27 22:37:44,119 | INFO     | all job control threads have been joined
[2025-11-27 23:38:18] 2025-11-27 22:37:44,144 | INFO     | all payload control threads have been joined
[2025-11-27 23:38:18] 2025-11-27 22:37:44,277 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:38:18] 2025-11-27 22:37:44,277 | INFO     | aborting loop
[2025-11-27 23:38:18] 2025-11-27 22:37:44,481 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:44,499 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:44,569 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:44,655 | INFO     | [job] validate thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:44,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:38:18] 2025-11-27 22:37:44,758 | INFO     | [data] control thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,120 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,125 | INFO     | [job] control thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,150 | INFO     | [payload] control thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:38:18] 2025-11-27 22:37:45,283 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,339 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,434 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,484 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,642 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:45,720 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:46,235 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:48,666 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:38:18] 2025-11-27 22:37:55,073 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:38:18] 2025-11-27 22:37:55,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715542902592)>', '<ExcThread(monitor, started 140714730055424)>']
[2025-11-27 23:38:18] 2025-11-27 22:38:00,105 | INFO     | all workflow threads have been joined
[2025-11-27 23:38:18] 2025-11-27 22:38:00,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:38:18] 2025-11-27 22:38:00,105 | INFO     | traces error code: 0
[2025-11-27 23:38:18] 2025-11-27 22:38:00,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:38:18] 2025-11-27 22:38:13,081 | INFO     | PID=6651 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:38:18] 2025-11-27 22:38:13,081 | INFO     | .. there are 9 such processes running
[2025-11-27 23:38:18] 2025-11-27 22:38:13,082 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:38:18] 2025-11-27 22:38:13,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:38:18] 2025-11-27 22:38:13,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:38:18] 2025-11-27 22:38:13,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:38:18] 2025-11-27 22:38:13,082 | INFO     | [monitor] control thread has ended
[2025-11-27 23:38:18] 2025-11-27 22:38:13,402 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:38:18] 2025-11-27 22:38:13,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:38:18] 2025-11-27 22:38:13,530 [wrapper] pilotpid: 6651
[2025-11-27 23:38:18] 2025-11-27 22:38:13,599 [wrapper] Pilot exit status: 0
[2025-11-27 23:38:18] 2025-11-27 22:38:14,092 [wrapper] pandaids: 6895350265
[2025-11-27 23:38:18] 2025-11-27 22:38:14,999 [wrapper] cleanup supervisor_pilot 16033 6652
[2025-11-27 23:38:18] 2025-11-27 22:38:15,082 [wrapper] Test setup, not cleaning
[2025-11-27 23:38:18] 2025-11-27 22:38:15,185 [wrapper] apfmon messages muted
[2025-11-27 23:38:18] 2025-11-27 22:38:15,277 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:38:18] 2025-11-27 22:38:15,355 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:38:18]  *** Error codes and diagnostics ***
[2025-11-27 23:38:18]     "exeErrorCode": 0,
[2025-11-27 23:38:18]     "exeErrorDiag": "",
[2025-11-27 23:38:18]     "pilotErrorCode": 0,
[2025-11-27 23:38:18]     "pilotErrorDiag": "",
[2025-11-27 23:38:18]  *** Listing of results directory ***
[2025-11-27 23:38:18] total 1317912
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc    576529 Nov 22 21:41 pilot3.tar.gz
[2025-11-27 23:38:18] -rwx------. 1 boinc boinc     36292 Nov 22 21:50 runpilot2-wrapper.sh
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc      5112 Nov 22 21:50 queuedata.json
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:38:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:24 run_atlas
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:24 job.xml
[2025-11-27 23:38:18] -rw-r--r--. 2 boinc boinc 408834607 Nov 27 00:24 EVNT.47483658._000502.pool.root.1
[2025-11-27 23:38:18] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:24 shared
[2025-11-27 23:38:18] -rw-r--r--. 2 boinc boinc    590101 Nov 27 00:24 input.tar.gz
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc      6391 Nov 27 00:24 init_data.xml
[2025-11-27 23:38:18] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:24 start_atlas.sh
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:24 boinc_lockfile
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc      2785 Nov 27 00:24 pandaJob.out
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc    991538 Nov 27 00:28 agis_schedconf.cvmfs.json
[2025-11-27 23:38:18] drwx------. 5 boinc boinc      4096 Nov 27 00:28 pilot3
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:17 boinc_task_state.xml
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc 909709805 Nov 27 23:34 HITS.47556137._004978.pool.root.1
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc      1027 Nov 27 23:35 memory_monitor_summary.json
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc   1516240 Nov 27 23:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc   2453318 Nov 27 23:36 log.47556137._004978.job.log.tgz.1
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc        95 Nov 27 23:37 pilot_heartbeat.json
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc      7956 Nov 27 23:37 heartbeat.json
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:38 wrapper_checkpoint.txt
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:38 boinc_mmap_file
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc       819 Nov 27 23:38 pilotlog.txt
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc  11097439 Nov 27 23:38 log.47556137._004978.job.log.1
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc       353 Nov 27 23:38 output.list
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:38 runtime_log
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc  13568000 Nov 27 23:38 result.tar.gz
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc      8817 Nov 27 23:38 runtime_log.err
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc       662 Nov 27 23:38 ORuNDmoj9g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtHIKDm8do6Um.diag
[2025-11-27 23:38:18] -rw-r--r--. 1 boinc boinc     21499 Nov 27 23:38 stderr.txt
[2025-11-27 23:38:18] HITS file was successfully produced:
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc 909709805 Nov 27 23:34 shared/HITS.pool.root.1
[2025-11-27 23:38:18]  *** Contents of shared directory: ***
[2025-11-27 23:38:18] total 1301496
[2025-11-27 23:38:18] -rw-r--r--. 2 boinc boinc 408834607 Nov 27 00:24 ATLAS.root_0
[2025-11-27 23:38:18] -rw-r--r--. 2 boinc boinc    590101 Nov 27 00:24 input.tar.gz
[2025-11-27 23:38:18] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:24 start_atlas.sh
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc 909709805 Nov 27 23:34 HITS.pool.root.1
[2025-11-27 23:38:18] -rw-------. 1 boinc boinc  13568000 Nov 27 23:38 result.tar.gz
23:38:19 (2818): run_atlas exited; CPU time 314044.893991
23:38:19 (2818): called boinc_finish(0)

</stderr_txt>
]]>

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