Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:03:49 (1832256): wrapper (7.7.26015): starting
17:03:49 (1832256): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 17:03:49] Arguments: --nthreads 9
[2025-11-24 17:03:49] Threads: 9
[2025-11-24 17:03:49] Checking for CVMFS
[2025-11-24 17:03:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 17:03:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 17:03:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 17:03:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 17:03:50] 2.13.3.0 11160 27745 347108 153259 3 530 18609630 32935936 27761 16776704 0 96850905 99.354 159156312 41011 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 17:03:50] CVMFS is ok
[2025-11-24 17:03:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 17:03:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 17:03:50] Further information can be found at the LHC@home message board.
[2025-11-24 17:03:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 17:03:50] Checking for apptainer binary...
[2025-11-24 17:03:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 17:03:50] Running /usr/bin/apptainer --version
[2025-11-24 17:03:50] apptainer version 1.4.4-1.el9
[2025-11-24 17:03:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 17:03:50] c6-2-29-2.aglt2.org
[2025-11-24 17:03:50] apptainer works
[2025-11-24 17:03:50] Set ATHENA_PROC_NUMBER=9
[2025-11-24 17:03:50] Set ATHENA_CORE_NUMBER=9
[2025-11-24 17:03:50] Starting ATLAS job with PandaID=6895369433
[2025-11-24 17:03:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:47:29 (2406134): wrapper (7.7.26015): starting
13:47:29 (2406134): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:47:29] Arguments: --nthreads 8
[2025-11-25 13:47:29] Threads: 8
[2025-11-25 13:47:29] This job has been restarted, cleaning up previous attempt
[2025-11-25 13:47:29] Checking for CVMFS
[2025-11-25 13:47:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:47:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:47:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:47:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:47:30] 2.13.3.0 11160 28989 332400 153293 2 122 21344231 32935937 27110 16776704 0 102743346 99.365 168385471 41288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 13:47:30] CVMFS is ok
[2025-11-25 13:47:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:47:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:47:30] Further information can be found at the LHC@home message board.
[2025-11-25 13:47:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:47:30] Checking for apptainer binary...
[2025-11-25 13:47:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:47:30] Running /usr/bin/apptainer --version
[2025-11-25 13:47:30] apptainer version 1.4.4-1.el9
[2025-11-25 13:47:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:47:30] c6-2-29-2.aglt2.org
[2025-11-25 13:47:30] apptainer works
[2025-11-25 13:47:30] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:47:30] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:47:30] Starting ATLAS job with PandaID=6895369433
[2025-11-25 13:47:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:00:08 (2406134): BOINC client no longer exists - exiting
22:00:08 (2406134): timer handler: client dead, exiting
22:13:45 (347058): wrapper (7.7.26015): starting
22:13:45 (347058): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:13:45] Arguments: --nthreads 8
[2025-11-25 22:13:45] Threads: 8
[2025-11-25 22:13:45] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:13:45] Checking for CVMFS
[2025-11-25 22:13:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:13:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:13:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:13:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:13:46] 2.13.3.0 11160 29495 338960 153306 1 361 29228747 32935937 27384 16776704 0 105722318 99.371 170887739 41222 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:13:46] CVMFS is ok
[2025-11-25 22:13:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:13:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:13:46] Further information can be found at the LHC@home message board.
[2025-11-25 22:13:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:13:46] Checking for apptainer binary...
[2025-11-25 22:13:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:13:46] Running /usr/bin/apptainer --version
[2025-11-25 22:13:46] apptainer version 1.4.4-1.el9
[2025-11-25 22:13:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:13:46] c6-2-29-2.aglt2.org
[2025-11-25 22:13:46] apptainer works
[2025-11-25 22:13:46] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:13:46] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:13:46] Starting ATLAS job with PandaID=6895369433
[2025-11-25 22:13:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:18:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:18:25] 2025-11-27 01:17:19,424 | INFO     | time since job start (79403s) is within the limit (172800.0s)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,286 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:18:25] 2025-11-27 01:17:20,291 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3116.502142857142
[2025-11-26 20:18:25] 2025-11-27 01:17:20,297 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895369433/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,297 | INFO     | extracted standard info from prmon json
[2025-11-26 20:18:25] 2025-11-27 01:17:20,297 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:18:25] 2025-11-27 01:17:20,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:18:25] 2025-11-27 01:17:20,309 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:18:25] 2025-11-27 01:17:20,310 | INFO     | sum of square deviations: 684403001991.0205
[2025-11-26 20:18:25] 2025-11-27 01:17:20,326 | INFO     | sum of deviations: 3613337554410.7285
[2025-11-26 20:18:25] 2025-11-27 01:17:20,327 | INFO     | mean x: 1764166543.5192013
[2025-11-26 20:18:25] 2025-11-27 01:17:20,327 | INFO     | mean y: 2929495.510752688
[2025-11-26 20:18:25] 2025-11-27 01:17:20,327 | INFO     | intersect: -9311070012.657
[2025-11-26 20:18:25] 2025-11-27 01:17:20,328 | INFO     | chi2: 5.185289982431983
[2025-11-26 20:18:25] 2025-11-27 01:17:20,328 | INFO     | sum of square deviations: 676549228638.0553
[2025-11-26 20:18:25] 2025-11-27 01:17:20,345 | INFO     | sum of deviations: 4035065205203.164
[2025-11-26 20:18:25] 2025-11-27 01:17:20,345 | INFO     | mean x: 1764166391.0269854
[2025-11-26 20:18:25] 2025-11-27 01:17:20,345 | INFO     | mean y: 2937680.595219738
[2025-11-26 20:18:25] 2025-11-27 01:17:20,345 | INFO     | intersect: -10518878204.040344
[2025-11-26 20:18:25] 2025-11-27 01:17:20,346 | INFO     | chi2: 2.16699929798767
[2025-11-26 20:18:25] 2025-11-27 01:17:20,346 | INFO     | current chi2=2.16699929798767 (change=58.20871532104144 %)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,347 | INFO     | sum of square deviations: 668755545021.635
[2025-11-26 20:18:25] 2025-11-27 01:17:20,365 | INFO     | sum of deviations: 4066112137745.192
[2025-11-26 20:18:25] 2025-11-27 01:17:20,365 | INFO     | mean x: 1764166238.5325077
[2025-11-26 20:18:25] 2025-11-27 01:17:20,365 | INFO     | mean y: 2938285.0549535602
[2025-11-26 20:18:25] 2025-11-27 01:17:20,365 | INFO     | intersect: -10723399326.49374
[2025-11-26 20:18:25] 2025-11-27 01:17:20,366 | INFO     | chi2: 2.0202740825069414
[2025-11-26 20:18:25] 2025-11-27 01:17:20,366 | INFO     | current chi2=2.0202740825069414 (change=6.770893540066281 %)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,366 | INFO     | right removable region: 1291
[2025-11-26 20:18:25] 2025-11-27 01:17:20,367 | INFO     | sum of square deviations: 676547862611.21
[2025-11-26 20:18:25] 2025-11-27 01:17:20,383 | INFO     | sum of deviations: 3305151632893.6377
[2025-11-26 20:18:25] 2025-11-27 01:17:20,384 | INFO     | mean x: 1764166696.0246723
[2025-11-26 20:18:25] 2025-11-27 01:17:20,384 | INFO     | mean y: 2935471.792598304
[2025-11-26 20:18:25] 2025-11-27 01:17:20,384 | INFO     | intersect: -8615580317.404879
[2025-11-26 20:18:25] 2025-11-27 01:17:20,384 | INFO     | chi2: 3.4711098222089376
[2025-11-26 20:18:25] 2025-11-27 01:17:20,385 | INFO     | current chi2=3.4711098222089376 (change=33.05852066192579 %)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,385 | INFO     | sum of square deviations: 668753129553.8811
[2025-11-26 20:18:25] 2025-11-27 01:17:20,403 | INFO     | sum of deviations: 3193761841010.357
[2025-11-26 20:18:25] 2025-11-27 01:17:20,403 | INFO     | mean x: 1764166848.5294118
[2025-11-26 20:18:25] 2025-11-27 01:17:20,403 | INFO     | mean y: 2937650.740712074
[2025-11-26 20:18:25] 2025-11-27 01:17:20,403 | INFO     | intersect: -8422187426.08299
[2025-11-26 20:18:25] 2025-11-27 01:17:20,404 | INFO     | chi2: 3.3838687755204955
[2025-11-26 20:18:25] 2025-11-27 01:17:20,404 | INFO     | current chi2=3.3838687755204955 (change=2.5133473487428826 %)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,404 | INFO     | left removable region: 20
[2025-11-26 20:18:25] 2025-11-27 01:17:20,405 | INFO     | sum of square deviations: 636671512903.4666
[2025-11-26 20:18:25] 2025-11-27 01:17:20,421 | INFO     | sum of deviations: 3466923194621.5586
[2025-11-26 20:18:25] 2025-11-27 01:17:20,421 | INFO     | mean x: 1764166818.0527143
[2025-11-26 20:18:25] 2025-11-27 01:17:20,421 | INFO     | mean y: 2949886.678206137
[2025-11-26 20:18:25] 2025-11-27 01:17:20,421 | INFO     | intersect: -9603622320.072973
[2025-11-26 20:18:25] 2025-11-27 01:17:20,422 | INFO     | chi2: 0.1388775113907284
[2025-11-26 20:18:25] 2025-11-27 01:17:20,422 | INFO     | current memory leak: 5.45 B/s (using 1271 data points, chi2=0.14)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | could have reported an average CPU frequency of 3122 MHz (47 samples)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | ..............................
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . Timing measurements:
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . get job = 0 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . initial setup = 2 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . payload setup = 4 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . stage-in = 0 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . payload execution = 79368 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . stage-out = 3 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | . log creation = 0 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,423 | INFO     | ..............................
[2025-11-26 20:18:25] 2025-11-27 01:17:20,474 | INFO     | 
[2025-11-26 20:18:25] 2025-11-27 01:17:20,474 | INFO     | job summary report
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | --------------------------------------------------
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | PanDA job id: 6895369433
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | task id: 47556137
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | errors: (none)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | pilot state: finished 
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | transexitcode: 0
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | exeerrorcode: 0
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | exeerrordiag: 
[2025-11-26 20:18:25] 2025-11-27 01:17:20,475 | INFO     | exitcode: 0
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | exitmsg: OK
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | cpuconsumptiontime: 233509 s
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | nevents: 1000
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | neventsw: 0
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | pid: 403662
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | pgrp: 403662
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | corecount: 8
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | event service: False
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | sizes: {0: 2284137, 1: 2284336, 4: 2284598, 11: 2284626, 79377: 2345448, 79381: 2354442, 79384: 2354626, 79389: 2354872}
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | --------------------------------------------------
[2025-11-26 20:18:25] 2025-11-27 01:17:20,476 | INFO     | 
[2025-11-26 20:18:25] 2025-11-27 01:17:20,477 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 20:18:25] 2025-11-27 01:17:20,495 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,496 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,496 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,496 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,496 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,496 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,497 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,497 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,497 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,497 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,497 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,498 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:18:25] 2025-11-27 01:17:20,499 | INFO     | job 6895369433 has completed (purged errors)
[2025-11-26 20:18:25] 2025-11-27 01:17:20,499 | INFO     | overall cleanup function is called
[2025-11-26 20:18:25] 2025-11-27 01:17:20,821 | INFO     | PID=365622 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:18:25] 2025-11-27 01:17:20,822 | INFO     | .. there are 44 such processes running
[2025-11-26 20:18:25] 2025-11-27 01:17:21,523 | INFO     | --- collectZombieJob: --- 10, [403662]
[2025-11-26 20:18:25] 2025-11-27 01:17:21,523 | INFO     | zombie collector waiting for pid 403662
[2025-11-26 20:18:25] 2025-11-27 01:17:21,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:18:25] 2025-11-27 01:17:21,523 | INFO     | collected zombie processes
[2025-11-26 20:18:25] 2025-11-27 01:17:21,523 | INFO     | will attempt to kill all subprocesses of pid=403662
[2025-11-26 20:18:25] 2025-11-27 01:17:22,050 | INFO     | process IDs to be killed: [403662] (in reverse order)
[2025-11-26 20:18:25] 2025-11-27 01:17:22,180 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:18:25] 2025-11-27 01:17:22,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:18:25] 2025-11-27 01:17:22,195 | INFO     | did not find any defunct processes belonging to 403662
[2025-11-26 20:18:25] 2025-11-27 01:17:22,210 | INFO     | did not find any defunct processes belonging to 403662
[2025-11-26 20:18:25] 2025-11-27 01:17:22,212 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:18:25] 2025-11-27 01:17:22,212 | INFO     | ready for new job
[2025-11-26 20:18:25] 2025-11-27 01:17:22,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:18:25] 2025-11-27 01:17:22,218 | INFO     | ***************************************
[2025-11-26 20:18:25] 2025-11-27 01:17:22,218 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:18:25] 2025-11-27 01:17:22,218 | INFO     | ***************************************
[2025-11-26 20:18:25] 2025-11-27 01:17:22,218 | INFO     | 
[2025-11-26 20:18:25] 2025-11-27 01:17:22,221 | INFO     | architecture information:
[2025-11-26 20:18:25] 2025-11-27 01:17:22,221 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:18:25] 2025-11-27 01:17:22,235 | INFO     | cat /etc/os-release:
[2025-11-26 20:18:25] NAME="CentOS Linux"
[2025-11-26 20:18:25] VERSION="7 (Core)"
[2025-11-26 20:18:25] ID="centos"
[2025-11-26 20:18:25] ID_LIKE="rhel fedora"
[2025-11-26 20:18:25] VERSION_ID="7"
[2025-11-26 20:18:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:18:25] ANSI_COLOR="0;31"
[2025-11-26 20:18:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:18:25] HOME_URL="https://www.centos.org/"
[2025-11-26 20:18:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:18:25] 
[2025-11-26 20:18:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:18:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:18:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:18:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:18:25] 
[2025-11-26 20:18:25] 2025-11-27 01:17:22,236 | INFO     | ***************************************
[2025-11-26 20:18:25] 2025-11-27 01:17:22,738 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 20:18:25] 2025-11-27 01:17:22,751 | INFO     | sufficient remaining disk space (67742203904 B)
[2025-11-26 20:18:25] 2025-11-27 01:17:22,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:18:25] 2025-11-27 01:17:22,751 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:18:25] 2025-11-27 01:17:22,751 | INFO     | update_server=False
[2025-11-26 20:18:25] 2025-11-27 01:17:22,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:18:25] 2025-11-27 01:17:22,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:18:25] 2025-11-27 01:17:22,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:18:25] 2025-11-27 01:17:22,752 | INFO     | aborting loop
[2025-11-26 20:18:25] 2025-11-27 01:17:23,030 | INFO     | all data control threads have been joined
[2025-11-26 20:18:25] 2025-11-27 01:17:23,224 | INFO     | all job control threads have been joined
[2025-11-26 20:18:25] 2025-11-27 01:17:23,757 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:23,758 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:23,774 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:23,884 | INFO     | [job] validate thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:23,992 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:24,028 | INFO     | all payload control threads have been joined
[2025-11-26 20:18:25] 2025-11-27 01:17:24,035 | INFO     | [data] control thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:24,229 | INFO     | [job] control thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:24,721 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:24,757 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:24,883 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:24,896 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:25,033 | INFO     | [payload] control thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:25,087 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:25,197 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:25,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:18:25] 2025-11-27 01:17:25,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:18:25] 2025-11-27 01:17:26,489 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:29,697 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:18:25] 2025-11-27 01:17:53,387 | INFO     | PID=365622 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:18:25] 2025-11-27 01:17:53,387 | INFO     | .. there are 44 such processes running
[2025-11-26 20:18:25] 2025-11-27 01:17:53,388 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:18:25] 2025-11-27 01:17:53,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:18:25] 2025-11-27 01:17:53,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:18:25] 2025-11-27 01:18:19,534 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:18:25] 2025-11-27 01:18:20,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853063575360)>', '<ExcThread(monitor, started 139852540516096)>']
[2025-11-26 20:18:25] 2025-11-27 01:18:20,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:18:25] 2025-11-27 01:18:20,516 | INFO     | [monitor] control thread has ended
[2025-11-26 20:18:25] 2025-11-27 01:18:25,190 | INFO     | all workflow threads have been joined
[2025-11-26 20:18:25] 2025-11-27 01:18:25,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:18:25] 2025-11-27 01:18:25,190 | INFO     | traces error code: 0
[2025-11-26 20:18:25] 2025-11-27 01:18:25,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:18:25] 2025-11-27 01:18:25,352 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:18:25] 2025-11-27 01:18:25,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:18:25] 2025-11-27 01:18:25,357 [wrapper] pilotpid: 365622
[2025-11-26 20:18:25] 2025-11-27 01:18:25,359 [wrapper] Pilot exit status: 0
[2025-11-26 20:18:25] 2025-11-27 01:18:25,367 [wrapper] pandaids: 6895369433 6895369433 6895369433
[2025-11-26 20:18:25] 2025-11-27 01:18:25,431 [wrapper] cleanup supervisor_pilot 1584368 365625
[2025-11-26 20:18:25] 2025-11-27 01:18:25,434 [wrapper] Test setup, not cleaning
[2025-11-26 20:18:25] 2025-11-27 01:18:25,437 [wrapper] apfmon messages muted
[2025-11-26 20:18:25] 2025-11-27 01:18:25,440 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:18:25] 2025-11-27 01:18:25,443 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:18:25]  *** Error codes and diagnostics ***
[2025-11-26 20:18:25]     "exeErrorCode": 0,
[2025-11-26 20:18:25]     "exeErrorDiag": "",
[2025-11-26 20:18:25]     "pilotErrorCode": 0,
[2025-11-26 20:18:25]     "pilotErrorDiag": "",
[2025-11-26 20:18:25]  *** Listing of results directory ***
[2025-11-26 20:18:25] total 1718332
[2025-11-26 20:18:25] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 20:18:25] -rwx------. 1 boincer umatlas     36292 Nov 23 15:16 runpilot2-wrapper.sh
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 15:16 queuedata.json
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas       100 Nov 24 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:18:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 17:03 run_atlas
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas       105 Nov 24 17:03 job.xml
[2025-11-26 20:18:25] -rw-r--r--. 3 boincer umatlas 409701416 Nov 24 17:03 EVNT.47483658._000885.pool.root.1
[2025-11-26 20:18:25] -rw-r--r--. 3 boincer umatlas 409701416 Nov 24 17:03 ATLAS.root_0
[2025-11-26 20:18:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 17:03 start_atlas.sh
[2025-11-26 20:18:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 17:03 shared
[2025-11-26 20:18:25] -rw-r--r--. 2 boincer umatlas    590097 Nov 24 17:03 input.tar.gz
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas         0 Nov 24 17:03 boinc_lockfile
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 22:13 pandaJob.out
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas        57 Nov 25 22:13 setup.sh.local
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas    991877 Nov 25 22:13 agis_schedconf.cvmfs.json
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas       534 Nov 26 20:09 boinc_task_state.xml
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 20:09 init_data.xml
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas 911869406 Nov 26 20:16 HITS.47556137._008711.pool.root.1
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas      1068 Nov 26 20:17 memory_monitor_summary.json
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas        96 Nov 26 20:17 pilot_heartbeat.json
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas   2334604 Nov 26 20:17 log.47556137._008711.job.log.tgz.1
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas      8633 Nov 26 20:17 heartbeat.json
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:18 wrapper_checkpoint.txt
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:18 boinc_mmap_file
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas      4823 Nov 26 20:18 pilotlog.txt
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas   9848449 Nov 26 20:18 log.47556137._008711.job.log.1
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas       353 Nov 26 20:18 output.list
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:18 runtime_log
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas  12206080 Nov 26 20:18 result.tar.gz
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 20:18 runtime_log.err
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas       915 Nov 26 20:18 n8WMDmPgVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrjIKDm5cLwVn.diag
[2025-11-26 20:18:25] -rw-r--r--. 1 boincer umatlas     25835 Nov 26 20:18 stderr.txt
[2025-11-26 20:18:25] HITS file was successfully produced:
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas 911869406 Nov 26 20:16 shared/HITS.pool.root.1
[2025-11-26 20:18:25]  *** Contents of shared directory: ***
[2025-11-26 20:18:25] total 1303124
[2025-11-26 20:18:25] -rw-r--r--. 3 boincer umatlas 409701416 Nov 24 17:03 ATLAS.root_0
[2025-11-26 20:18:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 17:03 start_atlas.sh
[2025-11-26 20:18:25] -rw-r--r--. 2 boincer umatlas    590097 Nov 24 17:03 input.tar.gz
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas 911869406 Nov 26 20:16 HITS.pool.root.1
[2025-11-26 20:18:25] -rw-------. 1 boincer umatlas  12206080 Nov 26 20:18 result.tar.gz
20:18:27 (347058): run_atlas exited; CPU time 235843.182927
20:18:27 (347058): called boinc_finish(0)

</stderr_txt>
]]>

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