Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
18:45:01 (255089): wrapper (7.7.26015): starting
18:45:01 (255089): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 18:45:01] Arguments: --nthreads 8
[2025-11-24 18:45:01] Threads: 8
[2025-11-24 18:45:01] Checking for CVMFS
[2025-11-24 18:45:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 18:45:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 18:45:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 18:45:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 18:45:01] 2.13.3.0 3914 3185 43592 153254 2 53 3499574 6144000 1325 130560 0 594494 99.983 64344 281 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 18:45:01] CVMFS is ok
[2025-11-24 18:45:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 18:45:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 18:45:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 18:45:01] Further information can be found at the LHC@home message board.
[2025-11-24 18:45:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 18:45:01] Checking for apptainer binary...
[2025-11-24 18:45:01] apptainer is not installed, using version from CVMFS
[2025-11-24 18:45:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:45:01] apptainer isnt working: ERROR  : Could not write info to setgroups: Permission denied
[2025-11-24 18:45:01] ERROR  : Error while waiting event for user namespace mappings: no event received
[2025-11-24 18:45:01] 
[2025-11-24 18:45:01] Falling back to singularity found in PATH at /usr/bin/singularity
[2025-11-24 18:45:01] WARNING: singularity support will be removed in a future version of native ATLAS
[2025-11-24 18:45:01] Please install apptainer instead following the instructions at https://apptainer.org/docs/admin/main/installation.html
[2025-11-24 18:45:01] Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:45:01] singularity works
[2025-11-24 18:45:01] Set ATHENA_PROC_NUMBER=8
[2025-11-24 18:45:01] Set ATHENA_CORE_NUMBER=8
[2025-11-24 18:45:01] Starting ATLAS job with PandaID=6895369417
[2025-11-24 18:45:01] Running command: /usr/bin/singularity exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:06:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:06:09] 2025-11-25 09:05:40,115 | INFO     | monitor loop #1570: job 0:6895369417 is in state 'finished'
[2025-11-25 10:06:09] 2025-11-25 09:05:40,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:06:09] 2025-11-25 09:05:40,314 | INFO     | time since job start (55226s) is within the limit (172800.0s)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,319 | INFO     | time since job start (55228s) is within the limit (172800.0s)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,531 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 10:06:09] 2025-11-25 09:05:42,533 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4337.6509375000005
[2025-11-25 10:06:09] 2025-11-25 09:05:42,534 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6895369417/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,534 | INFO     | extracted standard info from prmon json
[2025-11-25 10:06:09] 2025-11-25 09:05:42,534 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:06:09] 2025-11-25 09:05:42,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:06:09] 2025-11-25 09:05:42,536 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:06:09] 2025-11-25 09:05:42,536 | INFO     | sum of square deviations: 102551946628.85924
[2025-11-25 10:06:09] 2025-11-25 09:05:42,538 | INFO     | sum of deviations: 318332974427.06604
[2025-11-25 10:06:09] 2025-11-25 09:05:42,538 | INFO     | mean x: 1764022481.8132184
[2025-11-25 10:06:09] 2025-11-25 09:05:42,538 | INFO     | mean y: 2892071.985632184
[2025-11-25 10:06:09] 2025-11-25 09:05:42,538 | INFO     | intersect: -5472835518.287057
[2025-11-25 10:06:09] 2025-11-25 09:05:42,538 | INFO     | chi2: 2.5845948550477074
[2025-11-25 10:06:09] 2025-11-25 09:05:42,538 | INFO     | sum of square deviations: 94879834210.54799
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | sum of deviations: 475095186460.7904
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | mean x: 1764021914.915452
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | mean y: 2903631.0962099126
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | intersect: -8830146379.59306
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | chi2: 1.753948153329142
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | current chi2=1.753948153329142 (change=32.13837171022431 %)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,539 | INFO     | sum of square deviations: 87102386564.10645
[2025-11-25 10:06:09] 2025-11-25 09:05:42,540 | INFO     | sum of deviations: 449630726225.7872
[2025-11-25 10:06:09] 2025-11-25 09:05:42,540 | INFO     | mean x: 1764021335.7573965
[2025-11-25 10:06:09] 2025-11-25 09:05:42,540 | INFO     | mean y: 2901734.9852071004
[2025-11-25 10:06:09] 2025-11-25 09:05:42,540 | INFO     | intersect: -9103142606.183622
[2025-11-25 10:06:09] 2025-11-25 09:05:42,541 | INFO     | chi2: 1.7516907634861498
[2025-11-25 10:06:09] 2025-11-25 09:05:42,541 | INFO     | current chi2=1.7516907634861498 (change=0.12870333930380706 %)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,541 | INFO     | right removable region: 337
[2025-11-25 10:06:09] 2025-11-25 09:05:42,541 | INFO     | sum of square deviations: 101248406367.66183
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | sum of deviations: 217315202518.09912
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | mean x: 1764022715.483965
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | mean y: 2910109.9271137025
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | intersect: -3783311988.916355
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | chi2: 1.074614508410646
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | current chi2=1.074614508410646 (change=58.42232269742678 %)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,542 | INFO     | sum of square deviations: 99956166329.43185
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | sum of deviations: 194848348736.04156
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | mean x: 1764022951.556213
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | mean y: 2914211.8136094674
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | intersect: -3435762678.91864
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | chi2: 1.0388199631509656
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | current chi2=1.0388199631509656 (change=3.3309195976351096 %)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | left removable region: 20
[2025-11-25 10:06:09] 2025-11-25 09:05:42,543 | INFO     | sum of square deviations: 81178037610.10727
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | sum of deviations: 297830803265.899
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | mean x: 1764022121.1766562
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | mean y: 2931163.716088328
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | intersect: -6469017910.148254
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | chi2: 0.1767955018416865
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | current memory leak: 3.67 B/s (using 317 data points, chi2=0.18)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,544 | INFO     | could have reported an average CPU frequency of 4288 MHz (15 samples)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | ..............................
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . Timing measurements:
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . get job = 0 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . initial setup = 3 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . payload setup = 2 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . stage-in = 0 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . payload execution = 55204 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . stage-out = 1 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | . log creation = 0 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,545 | INFO     | ..............................
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | 
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | job summary report
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | --------------------------------------------------
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | PanDA job id: 6895369417
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | task id: 47556149
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | errors: (none)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | pilot state: finished 
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | transexitcode: 0
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | exeerrorcode: 0
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | exeerrordiag: 
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | exitcode: 0
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | exitmsg: OK
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | cpuconsumptiontime: 146947 s
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | nevents: 1000
[2025-11-25 10:06:09] 2025-11-25 09:05:42,572 | INFO     | neventsw: 0
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | pid: 274255
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | pgrp: 274255
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | corecount: 8
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | event service: False
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | sizes: {0: 2284309, 2: 2284571, 11: 2284599, 21179: 2319458, 21181: 2328457, 21182: 2328513, 21186: 2328887}
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | --------------------------------------------------
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | 
[2025-11-25 10:06:09] 2025-11-25 09:05:42,573 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:06:09] 2025-11-25 09:05:42,583 | INFO     | job 6895369417 has completed (purged errors)
[2025-11-25 10:06:09] 2025-11-25 09:05:42,584 | INFO     | overall cleanup function is called
[2025-11-25 10:06:09] 2025-11-25 09:05:43,594 | INFO     | --- collectZombieJob: --- 10, [274255]
[2025-11-25 10:06:09] 2025-11-25 09:05:43,594 | INFO     | zombie collector waiting for pid 274255
[2025-11-25 10:06:09] 2025-11-25 09:05:43,594 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:06:09] 2025-11-25 09:05:43,594 | INFO     | collected zombie processes
[2025-11-25 10:06:09] 2025-11-25 09:05:43,594 | INFO     | will attempt to kill all subprocesses of pid=274255
[2025-11-25 10:06:09] 2025-11-25 09:05:43,648 | INFO     | process IDs to be killed: [274255] (in reverse order)
[2025-11-25 10:06:09] 2025-11-25 09:05:43,674 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:06:09] 2025-11-25 09:05:43,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:06:09] 2025-11-25 09:05:43,676 | INFO     | did not find any defunct processes belonging to 274255
[2025-11-25 10:06:09] 2025-11-25 09:05:43,677 | INFO     | did not find any defunct processes belonging to 274255
[2025-11-25 10:06:09] 2025-11-25 09:05:43,677 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:06:09] 2025-11-25 09:05:43,678 | INFO     | ready for new job
[2025-11-25 10:06:09] 2025-11-25 09:05:43,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:06:09] 2025-11-25 09:05:43,679 | INFO     | ***************************************
[2025-11-25 10:06:09] 2025-11-25 09:05:43,679 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:06:09] 2025-11-25 09:05:43,679 | INFO     | ***************************************
[2025-11-25 10:06:09] 2025-11-25 09:05:43,679 | INFO     | 
[2025-11-25 10:06:09] 2025-11-25 09:05:43,679 | INFO     | architecture information:
[2025-11-25 10:06:09] 2025-11-25 09:05:43,679 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:06:09] 2025-11-25 09:05:43,684 | INFO     | cat /etc/os-release:
[2025-11-25 10:06:09] NAME="CentOS Linux"
[2025-11-25 10:06:09] VERSION="7 (Core)"
[2025-11-25 10:06:09] ID="centos"
[2025-11-25 10:06:09] ID_LIKE="rhel fedora"
[2025-11-25 10:06:09] VERSION_ID="7"
[2025-11-25 10:06:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:06:09] ANSI_COLOR="0;31"
[2025-11-25 10:06:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:06:09] HOME_URL="https://www.centos.org/"
[2025-11-25 10:06:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:06:09] 
[2025-11-25 10:06:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:06:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:06:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:06:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:06:09] 
[2025-11-25 10:06:09] 2025-11-25 09:05:43,685 | INFO     | ***************************************
[2025-11-25 10:06:09] 2025-11-25 09:05:44,187 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-25 10:06:09] 2025-11-25 09:05:44,194 | INFO     | sufficient remaining disk space (316676243456 B)
[2025-11-25 10:06:09] 2025-11-25 09:05:44,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:06:09] 2025-11-25 09:05:44,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:06:09] 2025-11-25 09:05:44,194 | INFO     | update_server=False
[2025-11-25 10:06:09] 2025-11-25 09:05:44,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | INFO     | aborting loop
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:06:09] 2025-11-25 09:05:44,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:06:09] 2025-11-25 09:05:44,980 | INFO     | all data control threads have been joined
[2025-11-25 10:06:09] 2025-11-25 09:05:45,200 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,200 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,200 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,255 | INFO     | all payload control threads have been joined
[2025-11-25 10:06:09] 2025-11-25 09:05:45,455 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:06:09] 2025-11-25 09:05:45,471 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,535 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,558 | INFO     | [job] validate thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:45,807 | INFO     | all job control threads have been joined
[2025-11-25 10:06:09] 2025-11-25 09:05:45,986 | INFO     | [data] control thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:46,200 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:46,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:46,260 | INFO     | [payload] control thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:46,415 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:46,470 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:46,812 | INFO     | [job] control thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:05:49,460 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:06:09] 2025-11-25 09:06:02,861 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:06:09] 2025-11-25 09:06:04,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124200422565696)>', '<ExcThread(monitor, started 124200069076736)>']
[2025-11-25 10:06:09] 2025-11-25 09:06:05,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:06:09] 2025-11-25 09:06:05,297 | INFO     | [monitor] control thread has ended
[2025-11-25 10:06:09] 2025-11-25 09:06:09,825 | INFO     | all workflow threads have been joined
[2025-11-25 10:06:09] 2025-11-25 09:06:09,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:06:09] 2025-11-25 09:06:09,825 | INFO     | traces error code: 0
[2025-11-25 10:06:09] 2025-11-25 09:06:09,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:06:09] 2025-11-25 09:06:09,863 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:06:09] 2025-11-25 09:06:09,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:06:09] 2025-11-25 09:06:09,865 [wrapper] pilotpid: 260803
[2025-11-25 10:06:09] 2025-11-25 09:06:09,866 [wrapper] Pilot exit status: 0
[2025-11-25 10:06:09] 2025-11-25 09:06:09,870 [wrapper] pandaids: 6895369417
[2025-11-25 10:06:09] 2025-11-25 09:06:09,887 [wrapper] cleanup supervisor_pilot  359567 260804
[2025-11-25 10:06:09] 2025-11-25 09:06:09,888 [wrapper] Test setup, not cleaning
[2025-11-25 10:06:09] 2025-11-25 09:06:09,889 [wrapper] apfmon messages muted
[2025-11-25 10:06:09] 2025-11-25 09:06:09,890 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:06:09] 2025-11-25 09:06:09,891 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:06:09]  *** Error codes and diagnostics ***
[2025-11-25 10:06:09]     "exeErrorCode": 0,
[2025-11-25 10:06:09]     "exeErrorDiag": "",
[2025-11-25 10:06:09]     "pilotErrorCode": 0,
[2025-11-25 10:06:09]     "pilotErrorDiag": "",
[2025-11-25 10:06:09]  *** Listing of results directory ***
[2025-11-25 10:06:09] total 1310956
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc      5112 Nov 23 21:16 queuedata.json
[2025-11-25 10:06:09] -rwx------ 1 boinc boinc     36292 Nov 23 21:16 runpilot2-wrapper.sh
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc    576529 Nov 23 21:16 pilot3.tar.gz
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc       100 Nov 24 18:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:06:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 18:45 run_atlas
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc       105 Nov 24 18:45 job.xml
[2025-11-25 10:06:09] -rw-r--r-- 2 boinc boinc 410614062 Nov 24 18:45 EVNT.47483658._001191.pool.root.1
[2025-11-25 10:06:09] -rw-r--r-- 2 boinc boinc    590096 Nov 24 18:45 input.tar.gz
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc         0 Nov 24 18:45 boinc_setup_complete
[2025-11-25 10:06:09] -rw-r--r-- 2 boinc boinc     15847 Nov 24 18:45 start_atlas.sh
[2025-11-25 10:06:09] drwxrwx--x 2 boinc boinc      4096 Nov 24 18:45 shared
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc      6524 Nov 24 18:45 init_data.xml
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc         0 Nov 24 18:45 boinc_lockfile
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc      2785 Nov 24 18:45 pandaJob.out
[2025-11-25 10:06:09] -rw------- 1 boinc boinc    991801 Nov 24 18:45 agis_schedconf.cvmfs.json
[2025-11-25 10:06:09] drwx------ 5 boinc boinc      4096 Nov 24 18:45 pilot3
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc       532 Nov 25 10:01 boinc_task_state.xml
[2025-11-25 10:06:09] -rw------- 1 boinc boinc 918567652 Nov 25 10:05 HITS.47556149._001772.pool.root.1
[2025-11-25 10:06:09] -rw------- 1 boinc boinc      1036 Nov 25 10:05 memory_monitor_summary.json
[2025-11-25 10:06:09] -rw------- 1 boinc boinc   1516240 Nov 25 10:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:06:09] -rw------- 1 boinc boinc   1629789 Nov 25 10:05 log.47556149._001772.job.log.tgz.1
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc      8192 Nov 25 10:05 boinc_mmap_file
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc        29 Nov 25 10:05 wrapper_checkpoint.txt
[2025-11-25 10:06:09] -rw------- 1 boinc boinc      8571 Nov 25 10:05 heartbeat.json
[2025-11-25 10:06:09] -rw------- 1 boinc boinc        98 Nov 25 10:05 pilot_heartbeat.json
[2025-11-25 10:06:09] -rw------- 1 boinc boinc      4553 Nov 25 10:06 pilotlog.txt
[2025-11-25 10:06:09] -rw------- 1 boinc boinc   3028013 Nov 25 10:06 log.47556149._001772.job.log.1
[2025-11-25 10:06:09] -rw------- 1 boinc boinc       353 Nov 25 10:06 output.list
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc       620 Nov 25 10:06 runtime_log
[2025-11-25 10:06:09] -rw------- 1 boinc boinc   4679680 Nov 25 10:06 result.tar.gz
[2025-11-25 10:06:09] -rw------- 1 boinc boinc       656 Nov 25 10:06 980LDmtgVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsjIKDmasmY9m.diag
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc      8785 Nov 25 10:06 runtime_log.err
[2025-11-25 10:06:09] -rw-r--r-- 1 boinc boinc     21977 Nov 25 10:06 stderr.txt
[2025-11-25 10:06:09] HITS file was successfully produced:
[2025-11-25 10:06:09] -rw------- 1 boinc boinc 918567652 Nov 25 10:05 shared/HITS.pool.root.1
[2025-11-25 10:06:09]  *** Contents of shared directory: ***
[2025-11-25 10:06:09] total 1303208
[2025-11-25 10:06:09] -rw-r--r-- 2 boinc boinc 410614062 Nov 24 18:45 ATLAS.root_0
[2025-11-25 10:06:09] -rw-r--r-- 2 boinc boinc    590096 Nov 24 18:45 input.tar.gz
[2025-11-25 10:06:09] -rw-r--r-- 2 boinc boinc     15847 Nov 24 18:45 start_atlas.sh
[2025-11-25 10:06:09] -rw------- 1 boinc boinc 918567652 Nov 25 10:05 HITS.pool.root.1
[2025-11-25 10:06:09] -rw------- 1 boinc boinc   4679680 Nov 25 10:06 result.tar.gz
10:06:11 (255089): run_atlas exited; CPU time 146929.350582
10:06:11 (255089): called boinc_finish(0)

</stderr_txt>
]]>

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