Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:55:39 (2272040): wrapper (7.7.26015): starting
12:55:39 (2272040): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 12:55:39] Arguments: --nthreads 8
[2025-11-24 12:55:39] Threads: 8
[2025-11-24 12:55:39] Checking for CVMFS
[2025-11-24 12:55:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:55:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:55:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:55:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:55:40] 2.13.2.0 6902 32559 266532 153254 1 525 25337186 40960000 25593 16776704 0 108750767 99.598 112860990 39556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 12:55:40] CVMFS is ok
[2025-11-24 12:55:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:55:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:55:40] Further information can be found at the LHC@home message board.
[2025-11-24 12:55:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:55:40] Checking for apptainer binary...
[2025-11-24 12:55:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:55:40] Running /usr/bin/apptainer --version
[2025-11-24 12:55:40] apptainer version 1.4.4-1.el9
[2025-11-24 12:55:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:55:41] c-212-6.aglt2.org
[2025-11-24 12:55:41] apptainer works
[2025-11-24 12:55:41] Set ATHENA_PROC_NUMBER=8
[2025-11-24 12:55:41] Set ATHENA_CORE_NUMBER=8
[2025-11-24 12:55:41] Starting ATLAS job with PandaID=6895348809
[2025-11-24 12:55:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:28:42 (3739492): wrapper (7.7.26015): starting
19:28:42 (3739492): wrapper: running run_atlas (--nthreads 11)
[2025-11-25 19:28:42] Arguments: --nthreads 11
[2025-11-25 19:28:42] Threads: 11
[2025-11-25 19:28:42] This job has been restarted, cleaning up previous attempt
[2025-11-25 19:28:42] Checking for CVMFS
[2025-11-25 19:28:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:28:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:28:42] 2.13.2.0 6902 34392 216088 153303 0 160 35058876 40960001 21467 16776704 0 117282471 99.606 122086529 39922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 19:28:42] CVMFS is ok
[2025-11-25 19:28:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:28:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:28:42] Further information can be found at the LHC@home message board.
[2025-11-25 19:28:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:28:42] Checking for apptainer binary...
[2025-11-25 19:28:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:28:42] Running /usr/bin/apptainer --version
[2025-11-25 19:28:42] apptainer version 1.4.4-1.el9
[2025-11-25 19:28:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:28:43] c-212-6.aglt2.org
[2025-11-25 19:28:43] apptainer works
[2025-11-25 19:28:43] Set ATHENA_PROC_NUMBER=11
[2025-11-25 19:28:43] Set ATHENA_CORE_NUMBER=11
[2025-11-25 19:28:43] Starting ATLAS job with PandaID=6895348809
[2025-11-25 19:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:42:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:42:40] 2025-11-27 00:41:44,647 | INFO     | monitor loop #4994: job 0:6895348809 is in state 'finished'
[2025-11-26 19:42:40] 2025-11-27 00:41:44,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:42:40] 2025-11-27 00:41:44,982 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 19:42:40] 2025-11-27 00:41:44,988 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3094.8016249999987
[2025-11-26 19:42:40] 2025-11-27 00:41:45,003 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895348809/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:42:40] 2025-11-27 00:41:45,003 | INFO     | extracted standard info from prmon json
[2025-11-26 19:42:40] 2025-11-27 00:41:45,004 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:42:40] 2025-11-27 00:41:45,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:42:40] 2025-11-27 00:41:45,040 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:42:40] 2025-11-27 00:41:45,041 | INFO     | sum of square deviations: 904817964998.5128
[2025-11-26 19:42:40] 2025-11-27 00:41:45,171 | INFO     | sum of deviations: 4556926845896.077
[2025-11-26 19:42:40] 2025-11-27 00:41:45,172 | INFO     | mean x: 1764160526.4772568
[2025-11-26 19:42:40] 2025-11-27 00:41:45,172 | INFO     | mean y: 3361570.6948915324
[2025-11-26 19:42:40] 2025-11-27 00:41:45,172 | INFO     | intersect: -8881464741.951963
[2025-11-26 19:42:40] 2025-11-27 00:41:45,173 | INFO     | chi2: 15.514104669545693
[2025-11-26 19:42:40] 2025-11-27 00:41:45,194 | INFO     | sum of square deviations: 895355504852.9825
[2025-11-26 19:42:40] 2025-11-27 00:41:45,322 | INFO     | time since job start (87170s) is within the limit (172800.0s)
[2025-11-26 19:42:40] 2025-11-27 00:41:45,382 | INFO     | sum of deviations: 5213930231012.457
[2025-11-26 19:42:40] 2025-11-27 00:41:45,383 | INFO     | mean x: 1764160373.9964888
[2025-11-26 19:42:40] 2025-11-27 00:41:45,383 | INFO     | mean y: 3372156.4901685393
[2025-11-26 19:42:40] 2025-11-27 00:41:45,383 | INFO     | intersect: -10269875795.277195
[2025-11-26 19:42:40] 2025-11-27 00:41:45,384 | INFO     | chi2: 11.131571595128543
[2025-11-26 19:42:40] 2025-11-27 00:41:45,384 | INFO     | current chi2=11.131571595128543 (change=28.248701215869044 %)
[2025-11-26 19:42:40] 2025-11-27 00:41:45,385 | INFO     | sum of square deviations: 885959278506.394
[2025-11-26 19:42:40] 2025-11-27 00:41:45,553 | INFO     | sum of deviations: 5812211749618.724
[2025-11-26 19:42:40] 2025-11-27 00:41:45,553 | INFO     | mean x: 1764160221.5158563
[2025-11-26 19:42:40] 2025-11-27 00:41:45,553 | INFO     | mean y: 3381866.123326286
[2025-11-26 19:42:40] 2025-11-27 00:41:45,553 | INFO     | intersect: -11570144159.80274
[2025-11-26 19:42:40] 2025-11-27 00:41:45,574 | INFO     | chi2: 7.502021581915468
[2025-11-26 19:42:40] 2025-11-27 00:41:45,575 | INFO     | current chi2=7.502021581915468 (change=32.605908179231925 %)
[2025-11-26 19:42:40] 2025-11-27 00:41:45,576 | INFO     | sum of square deviations: 876629053396.2325
[2025-11-26 19:42:40] 2025-11-27 00:41:45,863 | INFO     | sum of deviations: 6157257497249.313
[2025-11-26 19:42:40] 2025-11-27 00:41:45,864 | INFO     | mean x: 1764160069.0353606
[2025-11-26 19:42:40] 2025-11-27 00:41:45,864 | INFO     | mean y: 3387504.1336633665
[2025-11-26 19:42:40] 2025-11-27 00:41:45,864 | INFO     | intersect: -12387700572.781908
[2025-11-26 19:42:40] 2025-11-27 00:41:45,865 | INFO     | chi2: 6.108590410625653
[2025-11-26 19:42:40] 2025-11-27 00:41:45,865 | INFO     | current chi2=6.108590410625653 (change=18.57407574844692 %)
[2025-11-26 19:42:40] 2025-11-27 00:41:45,865 | INFO     | right removable region: 1413
[2025-11-26 19:42:40] 2025-11-27 00:41:45,895 | INFO     | sum of square deviations: 895350904374.9647
[2025-11-26 19:42:40] 2025-11-27 00:41:46,246 | INFO     | sum of deviations: 4124780237049.5215
[2025-11-26 19:42:40] 2025-11-27 00:41:46,247 | INFO     | mean x: 1764160678.9950843
[2025-11-26 19:42:40] 2025-11-27 00:41:46,247 | INFO     | mean y: 3368526.0758426967
[2025-11-26 19:42:40] 2025-11-27 00:41:46,247 | INFO     | intersect: -8123919968.459862
[2025-11-26 19:42:40] 2025-11-27 00:41:46,248 | INFO     | chi2: 13.528855717739457
[2025-11-26 19:42:40] 2025-11-27 00:41:46,248 | INFO     | current chi2=13.528855717739457 (change=12.79641329030927 %)
[2025-11-26 19:42:40] 2025-11-27 00:41:46,248 | INFO     | left removable region: 10
[2025-11-26 19:42:40] 2025-11-27 00:41:46,249 | INFO     | sum of square deviations: 856325046837.5518
[2025-11-26 19:42:40] 2025-11-27 00:41:46,290 | INFO     | sum of deviations: 5603942123875.775
[2025-11-26 19:42:40] 2025-11-27 00:41:46,290 | INFO     | mean x: 1764160343.5716321
[2025-11-26 19:42:40] 2025-11-27 00:41:46,290 | INFO     | mean y: 3398684.8282252317
[2025-11-26 19:42:40] 2025-11-27 00:41:46,290 | INFO     | intersect: -11541577722.346386
[2025-11-26 19:42:40] 2025-11-27 00:41:46,291 | INFO     | chi2: 3.7011787837586554
[2025-11-26 19:42:40] 2025-11-27 00:41:46,292 | INFO     | current memory leak: 6.54 B/s (using 1403 data points, chi2=3.70)
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | could have reported an average CPU frequency of 3092 MHz (51 samples)
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | ..............................
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . Timing measurements:
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . get job = 0 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . initial setup = 2 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . payload setup = 7 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . stage-in = 0 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . payload execution = 87122 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . stage-out = 7 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | . log creation = 2 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,293 | INFO     | ..............................
[2025-11-26 19:42:40] 2025-11-27 00:41:46,379 | INFO     | 
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | job summary report
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | --------------------------------------------------
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | PanDA job id: 6895348809
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | task id: 47556149
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | errors: (none)
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | pilot state: finished 
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | transexitcode: 0
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | exeerrorcode: 0
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | exeerrordiag: 
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | exitcode: 0
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | exitmsg: OK
[2025-11-26 19:42:40] 2025-11-27 00:41:46,380 | INFO     | cpuconsumptiontime: 211138 s
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | nevents: 1000
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | neventsw: 0
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | pid: 3789239
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | pgrp: 3789239
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | corecount: 11
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | event service: False
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | sizes: {0: 2284147, 1: 2284289, 5: 2284551, 11: 2284607, 87134: 2349572, 87135: 2349571, 87143: 2358749, 87144: 2358805, 87155: 2359051}
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | --------------------------------------------------
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | 
[2025-11-26 19:42:40] 2025-11-27 00:41:46,381 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 19:42:40] 2025-11-27 00:41:46,454 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,454 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | job 6895348809 has completed (purged errors)
[2025-11-26 19:42:40] 2025-11-27 00:41:46,456 | INFO     | overall cleanup function is called
[2025-11-26 19:42:40] 2025-11-27 00:41:47,493 | INFO     | --- collectZombieJob: --- 10, [3789239]
[2025-11-26 19:42:40] 2025-11-27 00:41:47,493 | INFO     | zombie collector waiting for pid 3789239
[2025-11-26 19:42:40] 2025-11-27 00:41:47,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:42:40] 2025-11-27 00:41:47,493 | INFO     | collected zombie processes
[2025-11-26 19:42:40] 2025-11-27 00:41:47,493 | INFO     | will attempt to kill all subprocesses of pid=3789239
[2025-11-26 19:42:40] 2025-11-27 00:41:48,905 | INFO     | process IDs to be killed: [3789239] (in reverse order)
[2025-11-26 19:42:40] 2025-11-27 00:41:49,083 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:42:40] 2025-11-27 00:41:49,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:42:40] 2025-11-27 00:41:49,130 | INFO     | did not find any defunct processes belonging to 3789239
[2025-11-26 19:42:40] 2025-11-27 00:41:49,164 | INFO     | did not find any defunct processes belonging to 3789239
[2025-11-26 19:42:40] 2025-11-27 00:41:49,172 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:42:40] 2025-11-27 00:41:49,173 | INFO     | ready for new job
[2025-11-26 19:42:40] 2025-11-27 00:41:49,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:42:40] 2025-11-27 00:41:49,182 | INFO     | ***************************************
[2025-11-26 19:42:40] 2025-11-27 00:41:49,182 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:42:40] 2025-11-27 00:41:49,182 | INFO     | ***************************************
[2025-11-26 19:42:40] 2025-11-27 00:41:49,182 | INFO     | 
[2025-11-26 19:42:40] 2025-11-27 00:41:49,191 | INFO     | architecture information:
[2025-11-26 19:42:40] 2025-11-27 00:41:49,195 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:42:40] 2025-11-27 00:41:49,275 | INFO     | cat /etc/os-release:
[2025-11-26 19:42:40] NAME="CentOS Linux"
[2025-11-26 19:42:40] VERSION="7 (Core)"
[2025-11-26 19:42:40] ID="centos"
[2025-11-26 19:42:40] ID_LIKE="rhel fedora"
[2025-11-26 19:42:40] VERSION_ID="7"
[2025-11-26 19:42:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:42:40] ANSI_COLOR="0;31"
[2025-11-26 19:42:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:42:40] HOME_URL="https://www.centos.org/"
[2025-11-26 19:42:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:42:40] 
[2025-11-26 19:42:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:42:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:42:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:42:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:42:40] 
[2025-11-26 19:42:40] 2025-11-27 00:41:49,275 | INFO     | ***************************************
[2025-11-26 19:42:40] 2025-11-27 00:41:49,779 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 19:42:40] 2025-11-27 00:41:49,859 | INFO     | sufficient remaining disk space (117397520384 B)
[2025-11-26 19:42:40] 2025-11-27 00:41:49,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:42:40] 2025-11-27 00:41:49,859 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:42:40] 2025-11-27 00:41:49,859 | INFO     | update_server=False
[2025-11-26 19:42:40] 2025-11-27 00:41:49,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:42:40] 2025-11-27 00:41:49,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:42:40] 2025-11-27 00:41:49,951 | INFO     | all payload control threads have been joined
[2025-11-26 19:42:40] 2025-11-27 00:41:49,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:42:40] 2025-11-27 00:41:50,673 | INFO     | all data control threads have been joined
[2025-11-26 19:42:40] 2025-11-27 00:41:50,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:42:40] 2025-11-27 00:41:50,686 | INFO     | aborting loop
[2025-11-26 19:42:40] 2025-11-27 00:41:50,865 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:50,957 | INFO     | [payload] control thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:50,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,082 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,382 | INFO     | all job control threads have been joined
[2025-11-26 19:42:40] 2025-11-27 00:41:51,411 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:42:40] 2025-11-27 00:41:51,495 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,495 | INFO     | [job] validate thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,638 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,679 | INFO     | [data] control thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,692 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:51,866 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:52,127 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:52,127 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:52,128 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:52,388 | INFO     | [job] control thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:52,418 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:41:53,969 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:42:40] 2025-11-27 00:42:21,371 | INFO     | PID=3756070 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:42:40] 2025-11-27 00:42:21,372 | INFO     | .. there are 28 such processes running
[2025-11-26 19:42:40] 2025-11-27 00:42:21,384 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:42:40] 2025-11-27 00:42:21,384 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:42:40] 2025-11-27 00:42:21,384 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:42:40] 2025-11-27 00:42:33,032 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:42:40] 2025-11-27 00:42:34,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253908985664)>', '<ExcThread(monitor, started 140253281113856)>']
[2025-11-26 19:42:40] 2025-11-27 00:42:35,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:42:40] 2025-11-27 00:42:35,475 | INFO     | [monitor] control thread has ended
[2025-11-26 19:42:40] 2025-11-27 00:42:39,666 | INFO     | all workflow threads have been joined
[2025-11-26 19:42:40] 2025-11-27 00:42:39,666 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:42:40] 2025-11-27 00:42:39,666 | INFO     | traces error code: 0
[2025-11-26 19:42:40] 2025-11-27 00:42:39,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:42:40] 2025-11-27 00:42:40,034 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:42:40] 2025-11-27 00:42:40,043 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:42:40] 2025-11-27 00:42:40,057 [wrapper] pilotpid: 3756070
[2025-11-26 19:42:40] 2025-11-27 00:42:40,064 [wrapper] Pilot exit status: 0
[2025-11-26 19:42:40] 2025-11-27 00:42:40,080 [wrapper] pandaids: 6895348809 6895348809
[2025-11-26 19:42:40] 2025-11-27 00:42:40,187 [wrapper] cleanup supervisor_pilot  273567 3756073
[2025-11-26 19:42:40] 2025-11-27 00:42:40,203 [wrapper] Test setup, not cleaning
[2025-11-26 19:42:40] 2025-11-27 00:42:40,210 [wrapper] apfmon messages muted
[2025-11-26 19:42:40] 2025-11-27 00:42:40,230 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:42:40] 2025-11-27 00:42:40,246 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:42:40]  *** Error codes and diagnostics ***
[2025-11-26 19:42:40]     "exeErrorCode": 0,
[2025-11-26 19:42:40]     "exeErrorDiag": "",
[2025-11-26 19:42:40]     "pilotErrorCode": 0,
[2025-11-26 19:42:40]     "pilotErrorDiag": "",
[2025-11-26 19:42:40]  *** Listing of results directory ***
[2025-11-26 19:42:40] total 1722080
[2025-11-26 19:42:40] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:25 pilot3.tar.gz
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:56 queuedata.json
[2025-11-26 19:42:40] -rwx------. 1 boincer umatlas     36292 Nov 22 14:56 runpilot2-wrapper.sh
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas       100 Nov 24 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:42:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 12:55 run_atlas
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas       105 Nov 24 12:55 job.xml
[2025-11-26 19:42:40] -rw-r--r--. 3 boincer umatlas 411501534 Nov 24 12:55 EVNT.47483658._001111.pool.root.1
[2025-11-26 19:42:40] -rw-r--r--. 3 boincer umatlas 411501534 Nov 24 12:55 ATLAS.root_0
[2025-11-26 19:42:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:55 start_atlas.sh
[2025-11-26 19:42:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 12:55 shared
[2025-11-26 19:42:40] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 12:55 input.tar.gz
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas         0 Nov 24 12:55 boinc_lockfile
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 19:28 pandaJob.out
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas        57 Nov 25 19:28 setup.sh.local
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas    991877 Nov 25 19:28 agis_schedconf.cvmfs.json
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas       534 Nov 26 18:56 boinc_task_state.xml
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas 909542405 Nov 26 19:37 HITS.47556149._000972.pool.root.1
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 19:37 init_data.xml
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas      1065 Nov 26 19:41 memory_monitor_summary.json
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:41 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas   2745909 Nov 26 19:41 log.47556149._000972.job.log.tgz.1
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas      8616 Nov 26 19:41 heartbeat.json
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas        96 Nov 26 19:42 pilot_heartbeat.json
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:42 boinc_mmap_file
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas        30 Nov 26 19:42 wrapper_checkpoint.txt
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas      4825 Nov 26 19:42 pilotlog.txt
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas  10716589 Nov 26 19:42 log.47556149._000972.job.log.1
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas       353 Nov 26 19:42 output.list
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:42 runtime_log
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas  13486080 Nov 26 19:42 result.tar.gz
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas      9425 Nov 26 19:42 runtime_log.err
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas       790 Nov 26 19:42 13bLDmvt8g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgMKKDmnlfLKo.diag
[2025-11-26 19:42:40] -rw-r--r--. 1 boincer umatlas     23531 Nov 26 19:42 stderr.txt
[2025-11-26 19:42:40] HITS file was successfully produced:
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas 909542405 Nov 26 19:37 shared/HITS.pool.root.1
[2025-11-26 19:42:40]  *** Contents of shared directory: ***
[2025-11-26 19:42:40] total 1303864
[2025-11-26 19:42:40] -rw-r--r--. 3 boincer umatlas 411501534 Nov 24 12:55 ATLAS.root_0
[2025-11-26 19:42:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:55 start_atlas.sh
[2025-11-26 19:42:40] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 12:55 input.tar.gz
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas 909542405 Nov 26 19:37 HITS.pool.root.1
[2025-11-26 19:42:40] -rw-------. 1 boincer umatlas  13486080 Nov 26 19:42 result.tar.gz
19:42:41 (3739492): run_atlas exited; CPU time 211847.968315
19:42:41 (3739492): called boinc_finish(0)

</stderr_txt>
]]>

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