Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:52:37 (16272): wrapper (7.7.26015): starting
03:52:37 (16272): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:52:37] Arguments: --nthreads 8
[2025-11-27 03:52:37] Threads: 8
[2025-11-27 03:52:37] Checking for CVMFS
[2025-11-27 03:52:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:52:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:52:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:52:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:52:40] 2.11.2.0 7869 286085 140140 153343 3 85 23460127 25165825 1288 130560 11 137999194 99.883 76945035 2647 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 03:52:40] CVMFS is ok
[2025-11-27 03:52:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:52:40] Checking for apptainer binary...
[2025-11-27 03:52:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:52:40] Running /usr/bin/apptainer --version
[2025-11-27 03:52:40] apptainer version 1.3.2-1.el7
[2025-11-27 03:52:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:52:48] cg-vwn276.simple-grid.lan
[2025-11-27 03:52:48] apptainer works
[2025-11-27 03:52:48] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:52:48] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:52:48] Starting ATLAS job with PandaID=6895369027
[2025-11-27 03:52:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:09:53]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:09:53] 2025-11-28 02:08:26,187 | INFO     | monitor loop #5627: job 0:6895369027 is in state 'finished'
[2025-11-28 03:09:53] 2025-11-28 02:08:26,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:09:53] 2025-11-28 02:08:28,004 | INFO     | time since job start (83531s) is within the limit (172800.0s)
[2025-11-28 03:09:53] 2025-11-28 02:08:28,691 | INFO     | monitor loop #5628: job 0:6895369027 is in state 'finished'
[2025-11-28 03:09:53] 2025-11-28 02:08:28,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:09:53] 2025-11-28 02:08:30,011 | INFO     | time since job start (83533s) is within the limit (172800.0s)
[2025-11-28 03:09:53] 2025-11-28 02:08:31,199 | INFO     | monitor loop #5629: job 0:6895369027 is in state 'finished'
[2025-11-28 03:09:53] 2025-11-28 02:08:31,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:09:53] 2025-11-28 02:08:32,019 | INFO     | time since job start (83535s) is within the limit (172800.0s)
[2025-11-28 03:09:53] 2025-11-28 02:08:33,703 | INFO     | monitor loop #5630: job 0:6895369027 is in state 'finished'
[2025-11-28 03:09:53] 2025-11-28 02:08:33,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:09:53] 2025-11-28 02:08:34,029 | INFO     | time since job start (83537s) is within the limit (172800.0s)
[2025-11-28 03:09:53] 2025-11-28 02:08:36,036 | INFO     | time since job start (83539s) is within the limit (172800.0s)
[2025-11-28 03:09:53] 2025-11-28 02:08:36,208 | INFO     | monitor loop #5631: job 0:6895369027 is in state 'finished'
[2025-11-28 03:09:53] 2025-11-28 02:08:36,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,043 | INFO     | time since job start (83541s) is within the limit (172800.0s)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,431 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 03:09:53] 2025-11-28 02:08:38,432 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 03:09:53] 2025-11-28 02:08:38,434 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895369027/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,434 | INFO     | extracted standard info from prmon json
[2025-11-28 03:09:53] 2025-11-28 02:08:38,435 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:09:53] 2025-11-28 02:08:38,435 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:09:53] 2025-11-28 02:08:38,468 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:09:53] 2025-11-28 02:08:38,470 | INFO     | sum of square deviations: 779999765833.2346
[2025-11-28 03:09:53] 2025-11-28 02:08:38,531 | INFO     | sum of deviations: 3455069848624.9736
[2025-11-28 03:09:53] 2025-11-28 02:08:38,531 | INFO     | mean x: 1764254139.5889707
[2025-11-28 03:09:53] 2025-11-28 02:08:38,532 | INFO     | mean y: 2829330.0911764707
[2025-11-28 03:09:53] 2025-11-28 02:08:38,532 | INFO     | intersect: -7812072096.826564
[2025-11-28 03:09:53] 2025-11-28 02:08:38,533 | INFO     | chi2: 22.461545456092686
[2025-11-28 03:09:53] 2025-11-28 02:08:38,535 | INFO     | sum of square deviations: 771428856822.2825
[2025-11-28 03:09:53] 2025-11-28 02:08:38,587 | INFO     | sum of deviations: 3906719721544.2915
[2025-11-28 03:09:53] 2025-11-28 02:08:38,587 | INFO     | mean x: 1764253987.092989
[2025-11-28 03:09:53] 2025-11-28 02:08:38,588 | INFO     | mean y: 2837364.7357933577
[2025-11-28 03:09:53] 2025-11-28 02:08:38,588 | INFO     | intersect: -8931811351.389654
[2025-11-28 03:09:53] 2025-11-28 02:08:38,589 | INFO     | chi2: 19.25841700753614
[2025-11-28 03:09:53] 2025-11-28 02:08:38,589 | INFO     | current chi2=19.25841700753614 (change=14.260498926122203 %)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,590 | INFO     | right removable region: 1354
[2025-11-28 03:09:53] 2025-11-28 02:08:38,591 | INFO     | sum of square deviations: 771427953412.2823
[2025-11-28 03:09:53] 2025-11-28 02:08:38,637 | INFO     | sum of deviations: 2889425544522.1606
[2025-11-28 03:09:53] 2025-11-28 02:08:38,638 | INFO     | mean x: 1764254292.092989
[2025-11-28 03:09:53] 2025-11-28 02:08:38,638 | INFO     | mean y: 2839392.879704797
[2025-11-28 03:09:53] 2025-11-28 02:08:38,638 | INFO     | intersect: -6605271443.728696
[2025-11-28 03:09:53] 2025-11-28 02:08:38,640 | INFO     | chi2: 17.725118125408418
[2025-11-28 03:09:53] 2025-11-28 02:08:38,640 | INFO     | current chi2=17.725118125408418 (change=21.086827440003752 %)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,640 | INFO     | left removable region: 10
[2025-11-28 03:09:53] 2025-11-28 02:08:38,642 | INFO     | sum of square deviations: 752792568750.0356
[2025-11-28 03:09:53] 2025-11-28 02:08:38,707 | INFO     | sum of deviations: 2952321806262.2744
[2025-11-28 03:09:53] 2025-11-28 02:08:38,708 | INFO     | mean x: 1764254261.6019344
[2025-11-28 03:09:53] 2025-11-28 02:08:38,708 | INFO     | mean y: 2858235.4322916665
[2025-11-28 03:09:53] 2025-11-28 02:08:38,708 | INFO     | intersect: -6916240789.372331
[2025-11-28 03:09:53] 2025-11-28 02:08:38,710 | INFO     | chi2: 10.196451184319907
[2025-11-28 03:09:53] 2025-11-28 02:08:38,710 | INFO     | current memory leak: 3.92 B/s (using 1344 data points, chi2=10.20)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,711 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,711 | INFO     | ..............................
[2025-11-28 03:09:53] 2025-11-28 02:08:38,711 | INFO     | . Timing measurements:
[2025-11-28 03:09:53] 2025-11-28 02:08:38,711 | INFO     | . get job = 0 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | . initial setup = 11 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | . payload setup = 150 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | . stage-in = 0 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | . payload execution = 83079 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | . stage-out = 5 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | . log creation = 1 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,712 | INFO     | ..............................
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | 
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | job summary report
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | --------------------------------------------------
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | PanDA job id: 6895369027
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | task id: 47556137
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | errors: (none)
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:09:53] 2025-11-28 02:08:38,832 | INFO     | pilot state: finished 
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | transexitcode: 0
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | exeerrorcode: 0
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | exeerrordiag: 
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | exitcode: 0
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | exitmsg: OK
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | cpuconsumptiontime: 313273 s
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | nevents: 1000
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | neventsw: 0
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | pid: 26629
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | pgrp: 26629
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | corecount: 8
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | event service: False
[2025-11-28 03:09:53] 2025-11-28 02:08:38,833 | INFO     | sizes: {0: 2284143, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 45: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 88: 2284722, 92: 2285292, 98
[2025-11-28 03:09:53] 2025-11-28 02:08:38,834 | INFO     | --------------------------------------------------
[2025-11-28 03:09:53] 2025-11-28 02:08:38,834 | INFO     | 
[2025-11-28 03:09:53] 2025-11-28 02:08:38,834 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-28 03:09:53] 2025-11-28 02:08:39,275 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,275 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | job 6895369027 has completed (purged errors)
[2025-11-28 03:09:53] 2025-11-28 02:08:39,277 | INFO     | overall cleanup function is called
[2025-11-28 03:09:53] 2025-11-28 02:08:40,300 | INFO     | --- collectZombieJob: --- 10, [26629]
[2025-11-28 03:09:53] 2025-11-28 02:08:40,300 | INFO     | zombie collector waiting for pid 26629
[2025-11-28 03:09:53] 2025-11-28 02:08:40,300 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:09:53] 2025-11-28 02:08:40,300 | INFO     | collected zombie processes
[2025-11-28 03:09:53] 2025-11-28 02:08:40,300 | INFO     | will attempt to kill all subprocesses of pid=26629
[2025-11-28 03:09:53] 2025-11-28 02:08:40,412 | INFO     | process IDs to be killed: [26629] (in reverse order)
[2025-11-28 03:09:53] 2025-11-28 02:08:41,379 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:09:53] 2025-11-28 02:08:41,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:09:53] 2025-11-28 02:08:41,382 | INFO     | did not find any defunct processes belonging to 26629
[2025-11-28 03:09:53] 2025-11-28 02:08:41,385 | INFO     | did not find any defunct processes belonging to 26629
[2025-11-28 03:09:53] 2025-11-28 02:08:41,447 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:09:53] 2025-11-28 02:08:41,447 | INFO     | ready for new job
[2025-11-28 03:09:53] 2025-11-28 02:08:41,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:09:53] 2025-11-28 02:08:41,452 | INFO     | ***************************************
[2025-11-28 03:09:53] 2025-11-28 02:08:41,452 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:09:53] 2025-11-28 02:08:41,452 | INFO     | ***************************************
[2025-11-28 03:09:53] 2025-11-28 02:08:41,453 | INFO     | 
[2025-11-28 03:09:53] 2025-11-28 02:08:41,453 | INFO     | pilot is running in a VM
[2025-11-28 03:09:53] 2025-11-28 02:08:41,453 | INFO     | architecture information:
[2025-11-28 03:09:53] 2025-11-28 02:08:41,465 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:09:53] 2025-11-28 02:08:41,810 | INFO     | cat /etc/os-release:
[2025-11-28 03:09:53] NAME="CentOS Linux"
[2025-11-28 03:09:53] VERSION="7 (Core)"
[2025-11-28 03:09:53] ID="centos"
[2025-11-28 03:09:53] ID_LIKE="rhel fedora"
[2025-11-28 03:09:53] VERSION_ID="7"
[2025-11-28 03:09:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:09:53] ANSI_COLOR="0;31"
[2025-11-28 03:09:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:09:53] HOME_URL="https://www.centos.org/"
[2025-11-28 03:09:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:09:53] 
[2025-11-28 03:09:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:09:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:09:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:09:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:09:53] 
[2025-11-28 03:09:53] 2025-11-28 02:08:41,810 | INFO     | ***************************************
[2025-11-28 03:09:53] 2025-11-28 02:08:42,314 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-28 03:09:53] 2025-11-28 02:08:42,549 | INFO     | sufficient remaining disk space (495374565376 B)
[2025-11-28 03:09:53] 2025-11-28 02:08:42,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:09:53] 2025-11-28 02:08:42,549 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:09:53] 2025-11-28 02:08:42,549 | INFO     | update_server=False
[2025-11-28 03:09:53] 2025-11-28 02:08:42,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:09:53] 2025-11-28 02:08:42,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:09:53] 2025-11-28 02:08:42,551 | INFO     | aborting loop
[2025-11-28 03:09:53] 2025-11-28 02:08:42,562 | INFO     | all job control threads have been joined
[2025-11-28 03:09:53] 2025-11-28 02:08:43,050 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:09:53] 2025-11-28 02:08:43,287 | INFO     | all data control threads have been joined
[2025-11-28 03:09:53] 2025-11-28 02:08:43,556 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:43,559 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:43,569 | INFO     | [job] control thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:43,641 | INFO     | all payload control threads have been joined
[2025-11-28 03:09:53] 2025-11-28 02:08:43,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:43,690 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:43,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:09:53] 2025-11-28 02:08:43,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:09:53] 2025-11-28 02:08:44,097 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,293 | INFO     | [data] control thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,357 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,646 | INFO     | [job] validate thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,648 | INFO     | [payload] control thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,822 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,854 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:44,891 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:45,057 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:08:48,007 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:09:53] 2025-11-28 02:09:11,200 | INFO     | PID=20081 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 03:09:53] 2025-11-28 02:09:11,201 | INFO     | .. there are 9 such processes running
[2025-11-28 03:09:53] 2025-11-28 02:09:11,202 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:09:53] 2025-11-28 02:09:11,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:09:53] 2025-11-28 02:09:11,202 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:09:53] 2025-11-28 02:09:42,548 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:09:53] 2025-11-28 02:09:43,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592857298752)>', '<ExcThread(monitor, started 140592130553600)>']
[2025-11-28 03:09:53] 2025-11-28 02:09:44,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:09:53] 2025-11-28 02:09:44,402 | INFO     | [monitor] control thread has ended
[2025-11-28 03:09:53] 2025-11-28 02:09:48,546 | INFO     | all workflow threads have been joined
[2025-11-28 03:09:53] 2025-11-28 02:09:48,546 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:09:53] 2025-11-28 02:09:48,546 | INFO     | traces error code: 0
[2025-11-28 03:09:53] 2025-11-28 02:09:48,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:09:53] 2025-11-28 02:09:48,811 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:09:53] 2025-11-28 02:09:48,857 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:09:53] 2025-11-28 02:09:48,939 [wrapper] pilotpid: 20081
[2025-11-28 03:09:53] 2025-11-28 02:09:49,025 [wrapper] Pilot exit status: 0
[2025-11-28 03:09:53] 2025-11-28 02:09:49,386 [wrapper] pandaids: 6895369027
[2025-11-28 03:09:53] 2025-11-28 02:09:50,498 [wrapper] cleanup supervisor_pilot 29377 20082
[2025-11-28 03:09:53] 2025-11-28 02:09:50,591 [wrapper] Test setup, not cleaning
[2025-11-28 03:09:53] 2025-11-28 02:09:50,633 [wrapper] apfmon messages muted
[2025-11-28 03:09:53] 2025-11-28 02:09:50,682 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:09:53] 2025-11-28 02:09:50,764 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:09:53]  *** Error codes and diagnostics ***
[2025-11-28 03:09:53]     "exeErrorCode": 0,
[2025-11-28 03:09:53]     "exeErrorDiag": "",
[2025-11-28 03:09:53]     "pilotErrorCode": 0,
[2025-11-28 03:09:53]     "pilotErrorDiag": "",
[2025-11-28 03:09:53]  *** Listing of results directory ***
[2025-11-28 03:09:53] total 1317496
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc    576529 Nov 23 20:32 pilot3.tar.gz
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc      5112 Nov 23 20:51 queuedata.json
[2025-11-28 03:09:53] -rwx------. 1 boinc boinc     36292 Nov 23 20:54 runpilot2-wrapper.sh
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc       100 Nov 27 03:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:09:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 03:52 run_atlas
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc       105 Nov 27 03:52 job.xml
[2025-11-28 03:09:53] -rw-r--r--. 2 boinc boinc 410124806 Nov 27 03:52 EVNT.47483658._000879.pool.root.1
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc      6390 Nov 27 03:52 init_data.xml
[2025-11-28 03:09:53] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:52 start_atlas.sh
[2025-11-28 03:09:53] drwxrwx--x. 2 boinc boinc        68 Nov 27 03:52 shared
[2025-11-28 03:09:53] -rw-r--r--. 2 boinc boinc    590102 Nov 27 03:52 input.tar.gz
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc         0 Nov 27 03:52 boinc_lockfile
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc      2785 Nov 27 03:52 pandaJob.out
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc    991554 Nov 27 03:56 agis_schedconf.cvmfs.json
[2025-11-28 03:09:53] drwx------. 5 boinc boinc      4096 Nov 27 03:56 pilot3
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc       533 Nov 28 02:45 boinc_task_state.xml
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc 907887259 Nov 28 03:05 HITS.47556137._008654.pool.root.1
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc      1028 Nov 28 03:06 memory_monitor_summary.json
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc   1516240 Nov 28 03:06 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc   2448716 Nov 28 03:06 log.47556137._008654.job.log.tgz.1
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc      8629 Nov 28 03:08 heartbeat.json
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc        95 Nov 28 03:09 pilot_heartbeat.json
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc        29 Nov 28 03:09 wrapper_checkpoint.txt
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc      8192 Nov 28 03:09 boinc_mmap_file
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc      4884 Nov 28 03:09 pilotlog.txt
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc  11151144 Nov 28 03:09 log.47556137._008654.job.log.1
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc       353 Nov 28 03:09 output.list
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc       620 Nov 28 03:09 runtime_log
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc  13619200 Nov 28 03:09 result.tar.gz
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc      8817 Nov 28 03:09 runtime_log.err
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc       662 Nov 28 03:09 lhwKDmnLVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVjIKDmgfyHem.diag
[2025-11-28 03:09:53] -rw-r--r--. 1 boinc boinc     21445 Nov 28 03:09 stderr.txt
[2025-11-28 03:09:53] HITS file was successfully produced:
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc 907887259 Nov 28 03:05 shared/HITS.pool.root.1
[2025-11-28 03:09:53]  *** Contents of shared directory: ***
[2025-11-28 03:09:53] total 1301024
[2025-11-28 03:09:53] -rw-r--r--. 2 boinc boinc 410124806 Nov 27 03:52 ATLAS.root_0
[2025-11-28 03:09:53] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:52 start_atlas.sh
[2025-11-28 03:09:53] -rw-r--r--. 2 boinc boinc    590102 Nov 27 03:52 input.tar.gz
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc 907887259 Nov 28 03:05 HITS.pool.root.1
[2025-11-28 03:09:53] -rw-------. 1 boinc boinc  13619200 Nov 28 03:09 result.tar.gz
03:09:55 (16272): run_atlas exited; CPU time 313850.487184
03:09:55 (16272): called boinc_finish(0)

</stderr_txt>
]]>

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