Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:14:09 (6286): wrapper (7.7.26015): starting
12:14:09 (6286): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 12:14:09] Arguments: --nthreads 12
[2025-11-24 12:14:09] Threads: 12
[2025-11-24 12:14:09] Checking for CVMFS
[2025-11-24 12:14:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:14:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:14:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:14:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:14:10] 2.11.2.0 6893 115001 89984 153253 3 80 18445627 20275201 1 130560 0 49220576 99.932 5925082 31044 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 12:14:10] CVMFS is ok
[2025-11-24 12:14:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:14:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:14:10] Further information can be found at the LHC@home message board.
[2025-11-24 12:14:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:14:10] Checking for apptainer binary...
[2025-11-24 12:14:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:14:10] Running /usr/bin/apptainer --version
[2025-11-24 12:14:10] apptainer version 1.3.2-1.el7
[2025-11-24 12:14:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:14:11] c-205-3.aglt2.org
[2025-11-24 12:14:11] apptainer works
[2025-11-24 12:14:11] Set ATHENA_PROC_NUMBER=12
[2025-11-24 12:14:11] Set ATHENA_CORE_NUMBER=12
[2025-11-24 12:14:11] Starting ATLAS job with PandaID=6895386582
[2025-11-24 12:14:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:20:34]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:20:34] 2025-11-25 00:19:59,054 | INFO     | time since job start (25532s) is within the limit (172800.0s)
[2025-11-24 19:20:34] 2025-11-25 00:19:59,472 | INFO     | monitor loop #1913: job 0:6895386582 is in state 'finished'
[2025-11-24 19:20:34] 2025-11-25 00:19:59,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,059 | INFO     | time since job start (25534s) is within the limit (172800.0s)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,812 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 19:20:34] 2025-11-25 00:20:01,815 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1817.6666666666667
[2025-11-24 19:20:34] 2025-11-25 00:20:01,817 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895386582/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,818 | INFO     | extracted standard info from prmon json
[2025-11-24 19:20:34] 2025-11-25 00:20:01,818 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:20:34] 2025-11-25 00:20:01,818 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:20:34] 2025-11-25 00:20:01,826 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:20:34] 2025-11-25 00:20:01,826 | INFO     | sum of square deviations: 22646629774.59587
[2025-11-24 19:20:34] 2025-11-25 00:20:01,830 | INFO     | sum of deviations: 361896837477.96594
[2025-11-24 19:20:34] 2025-11-25 00:20:01,830 | INFO     | mean x: 1764017215.7583733
[2025-11-24 19:20:34] 2025-11-25 00:20:01,830 | INFO     | mean y: 3413309.009569378
[2025-11-24 19:20:34] 2025-11-25 00:20:01,830 | INFO     | intersect: -28185869511.154964
[2025-11-24 19:20:34] 2025-11-25 00:20:01,831 | INFO     | chi2: 5.774916946614819
[2025-11-24 19:20:34] 2025-11-25 00:20:01,831 | INFO     | sum of square deviations: 21843661611.75766
[2025-11-24 19:20:34] 2025-11-25 00:20:01,835 | INFO     | sum of deviations: 510985334726.88855
[2025-11-24 19:20:34] 2025-11-25 00:20:01,835 | INFO     | mean x: 1764017063.2615013
[2025-11-24 19:20:34] 2025-11-25 00:20:01,835 | INFO     | mean y: 3441590.760290557
[2025-11-24 19:20:34] 2025-11-25 00:20:01,836 | INFO     | intersect: -41261931658.26665
[2025-11-24 19:20:34] 2025-11-25 00:20:01,836 | INFO     | chi2: 3.0664965093441365
[2025-11-24 19:20:34] 2025-11-25 00:20:01,836 | INFO     | current chi2=3.0664965093441365 (change=46.899729681105164 %)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,837 | INFO     | sum of square deviations: 21059903111.4118
[2025-11-24 19:20:34] 2025-11-25 00:20:01,840 | INFO     | sum of deviations: 569257830484.4121
[2025-11-24 19:20:34] 2025-11-25 00:20:01,840 | INFO     | mean x: 1764016910.764706
[2025-11-24 19:20:34] 2025-11-25 00:20:01,840 | INFO     | mean y: 3452883.556372549
[2025-11-24 19:20:34] 2025-11-25 00:20:01,841 | INFO     | intersect: -47678648702.92209
[2025-11-24 19:20:34] 2025-11-25 00:20:01,841 | INFO     | chi2: 2.422308860503789
[2025-11-24 19:20:34] 2025-11-25 00:20:01,841 | INFO     | current chi2=2.422308860503789 (change=21.007284595870185 %)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,841 | INFO     | right removable region: 407
[2025-11-24 19:20:34] 2025-11-25 00:20:01,842 | INFO     | sum of square deviations: 21843620985.278187
[2025-11-24 19:20:34] 2025-11-25 00:20:01,845 | INFO     | sum of deviations: 230145393215.86893
[2025-11-24 19:20:34] 2025-11-25 00:20:01,846 | INFO     | mean x: 1764017368.25908
[2025-11-24 19:20:34] 2025-11-25 00:20:01,846 | INFO     | mean y: 3438245.234866828
[2025-11-24 19:20:34] 2025-11-25 00:20:01,846 | INFO     | intersect: -18582329706.48085
[2025-11-24 19:20:34] 2025-11-25 00:20:01,846 | INFO     | chi2: 3.551828159103202
[2025-11-24 19:20:34] 2025-11-25 00:20:01,846 | INFO     | current chi2=3.551828159103202 (change=38.49559756551585 %)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,847 | INFO     | sum of square deviations: 21059872243.49043
[2025-11-24 19:20:34] 2025-11-25 00:20:01,851 | INFO     | sum of deviations: 191659006729.61786
[2025-11-24 19:20:34] 2025-11-25 00:20:01,851 | INFO     | mean x: 1764017520.754902
[2025-11-24 19:20:34] 2025-11-25 00:20:01,851 | INFO     | mean y: 3445726.8161764704
[2025-11-24 19:20:34] 2025-11-25 00:20:01,851 | INFO     | intersect: -16050300562.45823
[2025-11-24 19:20:34] 2025-11-25 00:20:01,852 | INFO     | chi2: 3.4611682313470444
[2025-11-24 19:20:34] 2025-11-25 00:20:01,852 | INFO     | current chi2=3.4611682313470444 (change=2.5524863167661906 %)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,852 | INFO     | left removable region: 20
[2025-11-24 19:20:34] 2025-11-25 00:20:01,852 | INFO     | sum of square deviations: 17972573058.160183
[2025-11-24 19:20:34] 2025-11-25 00:20:01,855 | INFO     | sum of deviations: 343781785910.0466
[2025-11-24 19:20:34] 2025-11-25 00:20:01,856 | INFO     | mean x: 1764017490.2583978
[2025-11-24 19:20:34] 2025-11-25 00:20:01,856 | INFO     | mean y: 3497724.1395348837
[2025-11-24 19:20:34] 2025-11-25 00:20:01,856 | INFO     | intersect: -33738865220.50552
[2025-11-24 19:20:34] 2025-11-25 00:20:01,856 | INFO     | chi2: 0.039873721593088225
[2025-11-24 19:20:34] 2025-11-25 00:20:01,856 | INFO     | current memory leak: 19.13 B/s (using 387 data points, chi2=0.04)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,857 | INFO     | could have reported an average CPU frequency of 2384 MHz (18 samples)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,857 | INFO     | ..............................
[2025-11-24 19:20:34] 2025-11-25 00:20:01,857 | INFO     | . Timing measurements:
[2025-11-24 19:20:34] 2025-11-25 00:20:01,857 | INFO     | . get job = 0 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,857 | INFO     | . initial setup = 2 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,858 | INFO     | . payload setup = 7 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,858 | INFO     | . stage-in = 0 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,858 | INFO     | . payload execution = 25493 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,858 | INFO     | . stage-out = 3 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,858 | INFO     | . log creation = 0 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,858 | INFO     | ..............................
[2025-11-24 19:20:34] 2025-11-25 00:20:01,938 | INFO     | 
[2025-11-24 19:20:34] 2025-11-25 00:20:01,938 | INFO     | job summary report
[2025-11-24 19:20:34] 2025-11-25 00:20:01,938 | INFO     | --------------------------------------------------
[2025-11-24 19:20:34] 2025-11-25 00:20:01,938 | INFO     | PanDA job id: 6895386582
[2025-11-24 19:20:34] 2025-11-25 00:20:01,938 | INFO     | task id: 47556149
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | errors: (none)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | pilot state: finished 
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | transexitcode: 0
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | exeerrorcode: 0
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | exeerrordiag: 
[2025-11-24 19:20:34] 2025-11-25 00:20:01,939 | INFO     | exitcode: 0
[2025-11-24 19:20:34] 2025-11-25 00:20:01,940 | INFO     | exitmsg: OK
[2025-11-24 19:20:34] 2025-11-25 00:20:01,940 | INFO     | cpuconsumptiontime: 291985 s
[2025-11-24 19:20:34] 2025-11-25 00:20:01,940 | INFO     | nevents: 1000
[2025-11-24 19:20:34] 2025-11-25 00:20:01,940 | INFO     | neventsw: 0
[2025-11-24 19:20:34] 2025-11-25 00:20:01,940 | INFO     | pid: 16431
[2025-11-24 19:20:34] 2025-11-25 00:20:01,940 | INFO     | pgrp: 16431
[2025-11-24 19:20:34] 2025-11-25 00:20:01,941 | INFO     | corecount: 12
[2025-11-24 19:20:34] 2025-11-25 00:20:01,941 | INFO     | event service: False
[2025-11-24 19:20:34] 2025-11-25 00:20:01,941 | INFO     | sizes: {0: 2284309, 5: 2284571, 11: 2284627, 25504: 2321779, 25508: 2330773, 25510: 2330829, 25518: 2331203}
[2025-11-24 19:20:34] 2025-11-25 00:20:01,941 | INFO     | --------------------------------------------------
[2025-11-24 19:20:34] 2025-11-25 00:20:01,941 | INFO     | 
[2025-11-24 19:20:34] 2025-11-25 00:20:01,941 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 19:20:34] 2025-11-25 00:20:01,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,966 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,966 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,966 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,968 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:20:34] 2025-11-25 00:20:01,969 | INFO     | job 6895386582 has completed (purged errors)
[2025-11-24 19:20:34] 2025-11-25 00:20:01,970 | INFO     | overall cleanup function is called
[2025-11-24 19:20:34] 2025-11-25 00:20:02,985 | INFO     | --- collectZombieJob: --- 10, [16431]
[2025-11-24 19:20:34] 2025-11-25 00:20:02,985 | INFO     | zombie collector waiting for pid 16431
[2025-11-24 19:20:34] 2025-11-25 00:20:03,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:20:34] 2025-11-25 00:20:03,008 | INFO     | collected zombie processes
[2025-11-24 19:20:34] 2025-11-25 00:20:03,008 | INFO     | will attempt to kill all subprocesses of pid=16431
[2025-11-24 19:20:34] 2025-11-25 00:20:03,102 | INFO     | process IDs to be killed: [16431] (in reverse order)
[2025-11-24 19:20:34] 2025-11-25 00:20:03,156 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:20:34] 2025-11-25 00:20:03,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:20:34] 2025-11-25 00:20:03,160 | INFO     | did not find any defunct processes belonging to 16431
[2025-11-24 19:20:34] 2025-11-25 00:20:03,163 | INFO     | did not find any defunct processes belonging to 16431
[2025-11-24 19:20:34] 2025-11-25 00:20:03,165 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:20:34] 2025-11-25 00:20:03,165 | INFO     | ready for new job
[2025-11-24 19:20:34] 2025-11-25 00:20:03,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:20:34] 2025-11-25 00:20:03,167 | INFO     | ***************************************
[2025-11-24 19:20:34] 2025-11-25 00:20:03,168 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:20:34] 2025-11-25 00:20:03,168 | INFO     | ***************************************
[2025-11-24 19:20:34] 2025-11-25 00:20:03,168 | INFO     | 
[2025-11-24 19:20:34] 2025-11-25 00:20:03,168 | INFO     | architecture information:
[2025-11-24 19:20:34] 2025-11-25 00:20:03,169 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:20:34] 2025-11-25 00:20:03,185 | INFO     | cat /etc/os-release:
[2025-11-24 19:20:34] NAME="CentOS Linux"
[2025-11-24 19:20:34] VERSION="7 (Core)"
[2025-11-24 19:20:34] ID="centos"
[2025-11-24 19:20:34] ID_LIKE="rhel fedora"
[2025-11-24 19:20:34] VERSION_ID="7"
[2025-11-24 19:20:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:20:34] ANSI_COLOR="0;31"
[2025-11-24 19:20:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:20:34] HOME_URL="https://www.centos.org/"
[2025-11-24 19:20:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:20:34] 
[2025-11-24 19:20:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:20:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:20:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:20:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:20:34] 
[2025-11-24 19:20:34] 2025-11-25 00:20:03,185 | INFO     | ***************************************
[2025-11-24 19:20:34] 2025-11-25 00:20:03,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 19:20:34] 2025-11-25 00:20:03,706 | INFO     | sufficient remaining disk space (28379709440 B)
[2025-11-24 19:20:34] 2025-11-25 00:20:03,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:20:34] 2025-11-25 00:20:03,707 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:20:34] 2025-11-25 00:20:03,707 | INFO     | update_server=False
[2025-11-24 19:20:34] 2025-11-25 00:20:03,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:20:34] 2025-11-25 00:20:03,708 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:20:34] 2025-11-25 00:20:03,708 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:20:34] 2025-11-25 00:20:03,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:20:34] 2025-11-25 00:20:03,709 | INFO     | aborting loop
[2025-11-24 19:20:34] 2025-11-25 00:20:04,020 | INFO     | all payload control threads have been joined
[2025-11-24 19:20:34] 2025-11-25 00:20:04,076 | INFO     | all data control threads have been joined
[2025-11-24 19:20:34] 2025-11-25 00:20:04,459 | INFO     | all job control threads have been joined
[2025-11-24 19:20:34] 2025-11-25 00:20:04,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:20:34] 2025-11-25 00:20:04,708 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:04,714 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:04,714 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:04,725 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,026 | INFO     | [payload] control thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,081 | INFO     | [data] control thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,140 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,164 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,465 | INFO     | [job] control thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,472 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,474 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,663 | INFO     | [job] validate thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,714 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:05,970 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:08,500 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:20:34] 2025-11-25 00:20:08,891 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:20:34] 2025-11-25 00:20:10,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110774523712)>', '<ExcThread(monitor, started 140109735253760)>']
[2025-11-24 19:20:34] 2025-11-25 00:20:15,055 | INFO     | all workflow threads have been joined
[2025-11-24 19:20:34] 2025-11-25 00:20:15,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:20:34] 2025-11-25 00:20:15,056 | INFO     | traces error code: 0
[2025-11-24 19:20:34] 2025-11-25 00:20:15,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:20:34] 2025-11-25 00:20:34,246 | INFO     | PID=9987 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 19:20:34] 2025-11-25 00:20:34,247 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:20:34] 2025-11-25 00:20:34,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:20:34] 2025-11-25 00:20:34,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:20:34] 2025-11-25 00:20:34,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:20:34] 2025-11-25 00:20:34,247 | INFO     | [monitor] control thread has ended
[2025-11-24 19:20:34] 2025-11-25 00:20:34,334 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:20:34] 2025-11-25 00:20:34,338 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:20:34] 2025-11-25 00:20:34,341 [wrapper] pilotpid: 9987
[2025-11-24 19:20:34] 2025-11-25 00:20:34,345 [wrapper] Pilot exit status: 0
[2025-11-24 19:20:34] 2025-11-25 00:20:34,358 [wrapper] pandaids: 6895386582
[2025-11-24 19:20:34] 2025-11-25 00:20:34,398 [wrapper] cleanup supervisor_pilot 32109 9988
[2025-11-24 19:20:34] 2025-11-25 00:20:34,402 [wrapper] Test setup, not cleaning
[2025-11-24 19:20:34] 2025-11-25 00:20:34,406 [wrapper] apfmon messages muted
[2025-11-24 19:20:34] 2025-11-25 00:20:34,410 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:20:34] 2025-11-25 00:20:34,414 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:20:34]  *** Error codes and diagnostics ***
[2025-11-24 19:20:34]     "exeErrorCode": 0,
[2025-11-24 19:20:34]     "exeErrorDiag": "",
[2025-11-24 19:20:34]     "pilotErrorCode": 0,
[2025-11-24 19:20:34]     "pilotErrorDiag": "",
[2025-11-24 19:20:34]  *** Listing of results directory ***
[2025-11-24 19:20:34] total 1306908
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 00:37 pilot3.tar.gz
[2025-11-24 19:20:34] -rwx------ 1 boincer umatlas     36292 Nov 24 00:41 runpilot2-wrapper.sh
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 00:41 queuedata.json
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas       100 Nov 24 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:20:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 12:14 run_atlas
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas       105 Nov 24 12:14 job.xml
[2025-11-24 19:20:34] -rw-r--r-- 2 boincer umatlas 408376747 Nov 24 12:14 EVNT.47483658._001249.pool.root.1
[2025-11-24 19:20:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 12:14 start_atlas.sh
[2025-11-24 19:20:34] drwxrwx--x 2 boincer umatlas      4096 Nov 24 12:14 shared
[2025-11-24 19:20:34] -rw-r--r-- 2 boincer umatlas    590107 Nov 24 12:14 input.tar.gz
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas         0 Nov 24 12:14 boinc_lockfile
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 12:14 pandaJob.out
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas        57 Nov 24 12:14 setup.sh.local
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas    991965 Nov 24 12:14 agis_schedconf.cvmfs.json
[2025-11-24 19:20:34] drwx------ 5 boincer umatlas      4096 Nov 24 12:14 pilot3
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas       533 Nov 24 19:09 boinc_task_state.xml
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas 914433941 Nov 24 19:19 HITS.47556149._002353.pool.root.1
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 19:19 init_data.xml
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas      1065 Nov 24 19:19 memory_monitor_summary.json
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas   1516227 Nov 24 19:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas   2182432 Nov 24 19:19 log.47556149._002353.job.log.tgz.1
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas      8661 Nov 24 19:20 heartbeat.json
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 19:20 boinc_mmap_file
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas        29 Nov 24 19:20 wrapper_checkpoint.txt
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas        95 Nov 24 19:20 pilot_heartbeat.json
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas       744 Nov 24 19:20 pilotlog.txt
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas   3591582 Nov 24 19:20 log.47556149._002353.job.log.1
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas       353 Nov 24 19:20 output.list
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas       620 Nov 24 19:20 runtime_log
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas   5795840 Nov 24 19:20 result.tar.gz
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas       669 Nov 24 19:20 DXQMDmtVeh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKULKDmMo3VMo.diag
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas      9340 Nov 24 19:20 runtime_log.err
[2025-11-24 19:20:34] -rw-r--r-- 1 boincer umatlas     21314 Nov 24 19:20 stderr.txt
[2025-11-24 19:20:34] HITS file was successfully produced:
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas 914433941 Nov 24 19:19 shared/HITS.pool.root.1
[2025-11-24 19:20:34]  *** Contents of shared directory: ***
[2025-11-24 19:20:34] total 1298072
[2025-11-24 19:20:34] -rw-r--r-- 2 boincer umatlas 408376747 Nov 24 12:14 ATLAS.root_0
[2025-11-24 19:20:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 12:14 start_atlas.sh
[2025-11-24 19:20:34] -rw-r--r-- 2 boincer umatlas    590107 Nov 24 12:14 input.tar.gz
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas 914433941 Nov 24 19:19 HITS.pool.root.1
[2025-11-24 19:20:34] -rw------- 1 boincer umatlas   5795840 Nov 24 19:20 result.tar.gz
19:20:36 (6286): run_atlas exited; CPU time 285397.814394
19:20:36 (6286): called boinc_finish(0)

</stderr_txt>
]]>

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